prot_H-paniculata_contig40667.10506.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig40667.10506.1
Unique Nameprot_H-paniculata_contig40667.10506.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length117
Homology
BLAST of mRNA_H-paniculata_contig40667.10506.1 vs. uniprot
Match: A0A6H5J897_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J897_9PHAE)

HSP 1 Score: 103 bits (256), Expect = 3.090e-23
Identity = 55/124 (44.35%), Postives = 82/124 (66.13%), Query Frame = 0
Query:    1 MVGSLIFLTKCTRFDICFSVIQAARYMSAPTQQHLVAVKRIFQYLQGHPDVPITYSRCEPKLLGYSDASYC-------TRSTTGTMFFFANGLVHFSSQLQKITATSTTEAELIALATCAKQGI 117
            +VGSL+FLT  TR++I ++V+   R M+ PT QH+V  KR+ +YL+G PD+P+ + R +  L  Y DAS+         RS+TG +F  A G+V  +S LQK+TA S+  AE+IA+AT A++ I
Sbjct:  488 IVGSLLFLTNTTRWEIGYAVMVLCRGMNKPTNQHMVGAKRVLRYLRGCPDMPLKFRRGQWDLKCYCDASFAGSSERLQKRSSTGYIFILAGGVVSAASTLQKLTAQSSVHAEIIAMATAAREAI 611          
BLAST of mRNA_H-paniculata_contig40667.10506.1 vs. uniprot
Match: A0A392RPS1_9FABA (Uncharacterized protein (Fragment) n=1 Tax=Trifolium medium TaxID=97028 RepID=A0A392RPS1_9FABA)

HSP 1 Score: 92.8 bits (229), Expect = 5.930e-22
Identity = 57/125 (45.60%), Postives = 76/125 (60.80%), Query Frame = 0
Query:    1 MVGSLIFLTKCTRFDICFSVIQAARYMSAPTQQHLVAVKRIFQYLQGHPDVPITYSR---CEPKLLGYSDASYC-----TRSTTGTMFFFANGLVHFSSQLQKITATSTTEAELIALATCAKQGI 117
            ++GSL++L   TR D+ FSV   ARYM  PT+ HL A KR+ +YLQG     I Y+R   CE  L G+SD+ Y       +ST+G +F +  G V  SS+ Q I   STTEAE +A A+CA QG+
Sbjct:    5 LIGSLMYLLA-TRPDLAFSVCLIARYMERPTEIHLAAAKRVLRYLQGTISFGILYTRGGDCE--LEGWSDSDYAGDIDDRKSTSGYVFMYGTGAVSRSSKKQAIVTLSTTEAEFVAAASCACQGV 126          
BLAST of mRNA_H-paniculata_contig40667.10506.1 vs. uniprot
Match: A0A2P6VNK8_9CHLO (Retrovirus-related Pol poly from transposon TNT 1-94 isoform B n=1 Tax=Micractinium conductrix TaxID=554055 RepID=A0A2P6VNK8_9CHLO)

HSP 1 Score: 98.6 bits (244), Expect = 1.340e-21
Identity = 53/122 (43.44%), Postives = 75/122 (61.48%), Query Frame = 0
Query:    1 MVGSLIFLTKCTRFDICFSVIQAARYMSAPTQQHLVAVKRIFQYLQGHPDVPITYSRCEPKLLGYSDASYC-----TRSTTGTMFFFANGLVHFSSQLQKITATSTTEAELIALATCAKQGI 117
            +VGSL++L+ CTR DI  +V   ARYM+ PT  H  A K + +YL G P++ IT+  C P LL + DA Y       RST+G +F    G + ++S+LQ   A STTE++ IA AT  K+G+
Sbjct:  954 LVGSLMYLSICTRPDIAQAVGALARYMAHPTIDHWTAAKTVLRYLAGTPNIGITFGACTPGLLTFCDADYAGDIDTRRSTSGYVFILNGGAISWASRLQPTVAASTTESDYIAAATAIKEGL 1075          
BLAST of mRNA_H-paniculata_contig40667.10506.1 vs. uniprot
Match: A0A392P0Y1_9FABA (Copia-type polyprotein (Fragment) n=1 Tax=Trifolium medium TaxID=97028 RepID=A0A392P0Y1_9FABA)

HSP 1 Score: 93.2 bits (230), Expect = 6.870e-21
Identity = 57/125 (45.60%), Postives = 77/125 (61.60%), Query Frame = 0
Query:    1 MVGSLIFLTKCTRFDICFSVIQAARYMSAPTQQHLVAVKRIFQYLQGHPDVPITYSR---CEPKLLGYSDASYC-----TRSTTGTMFFFANGLVHFSSQLQKITATSTTEAELIALATCAKQGI 117
            ++GSL++L    R D+ FSV   ARYM  PT+ HLVA KR+ +YLQG     I Y+R   CE K  G+SD+ Y       +ST+G +F +  G + +SS+ Q I   STTEAE +A A+CA QGI
Sbjct:   39 LIGSLMYLLA--RPDLAFSVCLIARYMEMPTEIHLVAAKRVLRYLQGTISFGILYTRGGVCELK--GWSDSDYAGVVDDRKSTSGYVFMYGTGAMSWSSKKQAIVTLSTTEAEFVAAASCACQGI 159          
BLAST of mRNA_H-paniculata_contig40667.10506.1 vs. uniprot
Match: A0A2P6UYX8_9CHLO (Retrotransposon Ty1-copia subclass n=1 Tax=Micractinium conductrix TaxID=554055 RepID=A0A2P6UYX8_9CHLO)

HSP 1 Score: 95.5 bits (236), Expect = 1.010e-20
Identity = 54/122 (44.26%), Postives = 73/122 (59.84%), Query Frame = 0
Query:    1 MVGSLIFLTKCTRFDICFSVIQAARYMSAPTQQHLVAVKRIFQYLQGHPDVPITYSRCEPKLLGYSDASYC-----TRSTTGTMFFFANGLVHFSSQLQKITATSTTEAELIALATCAKQGI 117
            +VGSL++L+ CTR DI  +V   AR+M+ PT  H  A K + +YL G PD+ IT+    P L  + DA +       RSTTG  F F  G + ++S+LQ   A STTEAE IA AT  K+G+
Sbjct:  187 LVGSLMYLSICTRPDIAQAVGALARHMANPTTDHWTAAKTVLRYLTGTPDIGITFGAGSPGLQVFCDADHAGDIDTRRSTTGYAFIFNGGAISWASRLQPTVAASTTEAEYIAAATTIKEGL 308          
BLAST of mRNA_H-paniculata_contig40667.10506.1 vs. uniprot
Match: A0A2P6UYV9_9CHLO (Retrovirus-related Pol poly from transposon TNT 1-94 n=3 Tax=Micractinium conductrix TaxID=554055 RepID=A0A2P6UYV9_9CHLO)

HSP 1 Score: 95.5 bits (236), Expect = 1.590e-20
Identity = 54/122 (44.26%), Postives = 73/122 (59.84%), Query Frame = 0
Query:    1 MVGSLIFLTKCTRFDICFSVIQAARYMSAPTQQHLVAVKRIFQYLQGHPDVPITYSRCEPKLLGYSDASYC-----TRSTTGTMFFFANGLVHFSSQLQKITATSTTEAELIALATCAKQGI 117
            +VGSL++L+ CTR DI  +V   AR+M+ PT  H  A K + +YL G PD+ IT+    P L  + DA +       RSTTG  F F  G + ++S+LQ   A STTEAE IA AT  K+G+
Sbjct:  739 LVGSLMYLSICTRPDIAQAVGALARHMANPTTDHWTAAKTVLRYLTGTPDIGITFGAGSPGLQVFCDADHAGDIDTRRSTTGYAFIFNGGAISWASRLQPTVAASTTEAEYIAAATTIKEGL 860          
BLAST of mRNA_H-paniculata_contig40667.10506.1 vs. uniprot
Match: A0A2P6UYV5_9CHLO (Gag-Pol poly (Fragment) n=1 Tax=Micractinium conductrix TaxID=554055 RepID=A0A2P6UYV5_9CHLO)

HSP 1 Score: 95.5 bits (236), Expect = 1.630e-20
Identity = 54/122 (44.26%), Postives = 73/122 (59.84%), Query Frame = 0
Query:    1 MVGSLIFLTKCTRFDICFSVIQAARYMSAPTQQHLVAVKRIFQYLQGHPDVPITYSRCEPKLLGYSDASYC-----TRSTTGTMFFFANGLVHFSSQLQKITATSTTEAELIALATCAKQGI 117
            +VGSL++L+ CTR DI  +V   AR+M+ PT  H  A K + +YL G PD+ IT+    P L  + DA +       RSTTG  F F  G + ++S+LQ   A STTEAE IA AT  K+G+
Sbjct:  843 LVGSLMYLSICTRPDIAQAVGALARHMANPTTDHWTAAKTVLRYLTGTPDIGITFGAGSPGLQVFCDADHAGDIDTRRSTTGYAFIFNGGAISWASRLQPTVAASTTEAEYIAAATTIKEGL 964          
BLAST of mRNA_H-paniculata_contig40667.10506.1 vs. uniprot
Match: A0A2P6UZ08_9CHLO (Gag-Pol poly (Fragment) n=1 Tax=Micractinium conductrix TaxID=554055 RepID=A0A2P6UZ08_9CHLO)

HSP 1 Score: 95.5 bits (236), Expect = 1.650e-20
Identity = 54/122 (44.26%), Postives = 73/122 (59.84%), Query Frame = 0
Query:    1 MVGSLIFLTKCTRFDICFSVIQAARYMSAPTQQHLVAVKRIFQYLQGHPDVPITYSRCEPKLLGYSDASYC-----TRSTTGTMFFFANGLVHFSSQLQKITATSTTEAELIALATCAKQGI 117
            +VGSL++L+ CTR DI  +V   AR+M+ PT  H  A K + +YL G PD+ IT+    P L  + DA +       RSTTG  F F  G + ++S+LQ   A STTEAE IA AT  K+G+
Sbjct: 1005 LVGSLMYLSICTRPDIAQAVGALARHMANPTTDHWTAAKTVLRYLTGTPDIGITFGAGSPGLQVFCDADHAGDIDTRRSTTGYAFIFNGGAISWASRLQPTVAASTTEAEYIAAATTIKEGL 1126          
BLAST of mRNA_H-paniculata_contig40667.10506.1 vs. uniprot
Match: A0A2P6VRK9_9CHLO (Gag-Pol poly n=2 Tax=Micractinium conductrix TaxID=554055 RepID=A0A2P6VRK9_9CHLO)

HSP 1 Score: 95.1 bits (235), Expect = 2.070e-20
Identity = 54/122 (44.26%), Postives = 73/122 (59.84%), Query Frame = 0
Query:    1 MVGSLIFLTKCTRFDICFSVIQAARYMSAPTQQHLVAVKRIFQYLQGHPDVPITYSRCEPKLLGYSDASYC-----TRSTTGTMFFFANGLVHFSSQLQKITATSTTEAELIALATCAKQGI 117
            +VGSL++L+ CTR DI  +V   AR+M+ PT  H  A K + +YL G PD+ IT+    P L  + DA +       RSTTG  F F  G + ++S+LQ   A STTEAE IA AT  K+G+
Sbjct:  417 LVGSLMYLSICTRPDIAQAVGALARHMANPTTDHWTAAKTVLRYLTGTPDIGITFGAGPPGLQVFCDADHAGDIDTRRSTTGYAFIFNGGAISWASRLQPTVAASTTEAEYIAAATTIKEGL 538          
BLAST of mRNA_H-paniculata_contig40667.10506.1 vs. uniprot
Match: A0A2P6V0U4_9CHLO (Gag-Pol poly n=1 Tax=Micractinium conductrix TaxID=554055 RepID=A0A2P6V0U4_9CHLO)

HSP 1 Score: 95.1 bits (235), Expect = 2.160e-20
Identity = 54/122 (44.26%), Postives = 73/122 (59.84%), Query Frame = 0
Query:    1 MVGSLIFLTKCTRFDICFSVIQAARYMSAPTQQHLVAVKRIFQYLQGHPDVPITYSRCEPKLLGYSDASYC-----TRSTTGTMFFFANGLVHFSSQLQKITATSTTEAELIALATCAKQGI 117
            +VGSL++L+ CTR DI  +V   AR+M+ PT  H  A K + +YL G PD+ IT+    P L  + DA +       RSTTG  F F  G + ++S+LQ   A STTEAE IA AT  K+G+
Sbjct:  711 LVGSLMYLSICTRPDIAQAVGALARHMANPTTDHWTAAKTVLRYLTGTPDIGITFGAGPPGLQVFCDADHAGDIDTRRSTTGYAFIFNGGAISWASRLQPTVAASTTEAEYIAAATTIKEGL 832          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig40667.10506.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5J897_9PHAE3.090e-2344.35Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A392RPS1_9FABA5.930e-2245.60Uncharacterized protein (Fragment) n=1 Tax=Trifoli... [more]
A0A2P6VNK8_9CHLO1.340e-2143.44Retrovirus-related Pol poly from transposon TNT 1-... [more]
A0A392P0Y1_9FABA6.870e-2145.60Copia-type polyprotein (Fragment) n=1 Tax=Trifoliu... [more]
A0A2P6UYX8_9CHLO1.010e-2044.26Retrotransposon Ty1-copia subclass n=1 Tax=Micract... [more]
A0A2P6UYV9_9CHLO1.590e-2044.26Retrovirus-related Pol poly from transposon TNT 1-... [more]
A0A2P6UYV5_9CHLO1.630e-2044.26Gag-Pol poly (Fragment) n=1 Tax=Micractinium condu... [more]
A0A2P6UZ08_9CHLO1.650e-2044.26Gag-Pol poly (Fragment) n=1 Tax=Micractinium condu... [more]
A0A2P6VRK9_9CHLO2.070e-2044.26Gag-Pol poly n=2 Tax=Micractinium conductrix TaxID... [more]
A0A2P6V0U4_9CHLO2.160e-2044.26Gag-Pol poly n=1 Tax=Micractinium conductrix TaxID... [more]

Pages

back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR11439:SF275coord: 1..115
IPR039537Retrotransposon Ty1/copia-likePANTHERPTHR11439GAG-POL-RELATED RETROTRANSPOSONcoord: 1..115

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig40667contigH-paniculata_contig40667:159..509 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig40667.10506.1mRNA_H-paniculata_contig40667.10506.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig40667 159..518 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig40667.10506.1 ID=prot_H-paniculata_contig40667.10506.1|Name=mRNA_H-paniculata_contig40667.10506.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=117bp
MVGSLIFLTKCTRFDICFSVIQAARYMSAPTQQHLVAVKRIFQYLQGHPD
VPITYSRCEPKLLGYSDASYCTRSTTGTMFFFANGLVHFSSQLQKITATS
TTEAELIALATCAKQGI
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR039537Retrotran_Ty1/copia-like