mRNA_H-paniculata_contig40667.10506.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig40667.10506.1 vs. uniprot
Match: A0A6H5J897_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J897_9PHAE) HSP 1 Score: 108 bits (271), Expect = 3.260e-25 Identity = 57/127 (44.88%), Postives = 84/127 (66.14%), Query Frame = 1
Query: 1 YQAMVGSLIFLTKCTRFDICFSVIQAARYMSAPTQQHLVAVKRIFQYLQGHPDVPITYSRCEPKLLGYSDASYC-------TRSTTGTMFFFANGLVHFSSQLQKITATSTTEAELIALATCAKQGI 360
YQ +VGSL+FLT TR++I ++V+ R M+ PT QH+V KR+ +YL+G PD+P+ + R + L Y DAS+ RS+TG +F A G+V +S LQK+TA S+ AE+IA+AT A++ I
Sbjct: 485 YQGIVGSLLFLTNTTRWEIGYAVMVLCRGMNKPTNQHMVGAKRVLRYLRGCPDMPLKFRRGQWDLKCYCDASFAGSSERLQKRSSTGYIFILAGGVVSAASTLQKLTAQSSVHAEIIAMATAAREAI 611
BLAST of mRNA_H-paniculata_contig40667.10506.1 vs. uniprot
Match: A0A6H5JN95_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JN95_9PHAE) HSP 1 Score: 104 bits (260), Expect = 8.450e-24 Identity = 50/125 (40.00%), Postives = 83/125 (66.40%), Query Frame = 1
Query: 1 YQAMVGSLIFLTKCTRFDICFSVIQAARYMSAPTQQHLVAVKRIFQYLQGHPDVPITYSRCEPKLLGYSDASYCT-----RSTTGTMFFFANGLVHFSSQLQKITATSTTEAELIALATCAKQGI 360
+QA+ GSL++LT+CTR+D+ ++V Q R + P Q H+ A K + +YL+G PD+PI Y + + +L ++ +S+ T RSTTG +FF GL+++ ++ Q + A ST EAEL AL+ A++ +
Sbjct: 410 FQAITGSLLYLTQCTRYDLSYAVHQLTRARANPAQVHMAAPKHLLRYLRGTPDLPIVYKKVQFRLSCFTSSSFGTNPDNGRSTTGYLFFLGGGLINYGAKAQTLAAQSTAEAELQALSFSAREAV 534
BLAST of mRNA_H-paniculata_contig40667.10506.1 vs. uniprot
Match: A0A2P6VNK8_9CHLO (Retrovirus-related Pol poly from transposon TNT 1-94 isoform B n=1 Tax=Micractinium conductrix TaxID=554055 RepID=A0A2P6VNK8_9CHLO) HSP 1 Score: 103 bits (258), Expect = 1.940e-23 Identity = 55/125 (44.00%), Postives = 77/125 (61.60%), Query Frame = 1
Query: 1 YQAMVGSLIFLTKCTRFDICFSVIQAARYMSAPTQQHLVAVKRIFQYLQGHPDVPITYSRCEPKLLGYSDASYC-----TRSTTGTMFFFANGLVHFSSQLQKITATSTTEAELIALATCAKQGI 360
Y A+VGSL++L+ CTR DI +V ARYM+ PT H A K + +YL G P++ IT+ C P LL + DA Y RST+G +F G + ++S+LQ A STTE++ IA AT K+G+
Sbjct: 951 YSALVGSLMYLSICTRPDIAQAVGALARYMAHPTIDHWTAAKTVLRYLAGTPNIGITFGACTPGLLTFCDADYAGDIDTRRSTSGYVFILNGGAISWASRLQPTVAASTTESDYIAAATAIKEGL 1075
BLAST of mRNA_H-paniculata_contig40667.10506.1 vs. uniprot
Match: A0A392RPS1_9FABA (Uncharacterized protein (Fragment) n=1 Tax=Trifolium medium TaxID=97028 RepID=A0A392RPS1_9FABA) HSP 1 Score: 96.3 bits (238), Expect = 2.880e-23 Identity = 58/128 (45.31%), Postives = 78/128 (60.94%), Query Frame = 1
Query: 1 YQAMVGSLIFLTKCTRFDICFSVIQAARYMSAPTQQHLVAVKRIFQYLQGHPDVPITYSR---CEPKLLGYSDASYC-----TRSTTGTMFFFANGLVHFSSQLQKITATSTTEAELIALATCAKQGI 360
Y+ ++GSL++L TR D+ FSV ARYM PT+ HL A KR+ +YLQG I Y+R CE L G+SD+ Y +ST+G +F + G V SS+ Q I STTEAE +A A+CA QG+
Sbjct: 2 YRQLIGSLMYLLA-TRPDLAFSVCLIARYMERPTEIHLAAAKRVLRYLQGTISFGILYTRGGDCE--LEGWSDSDYAGDIDDRKSTSGYVFMYGTGAVSRSSKKQAIVTLSTTEAEFVAAASCACQGV 126
BLAST of mRNA_H-paniculata_contig40667.10506.1 vs. uniprot
Match: A0A2P6UYX8_9CHLO (Retrotransposon Ty1-copia subclass n=1 Tax=Micractinium conductrix TaxID=554055 RepID=A0A2P6UYX8_9CHLO) HSP 1 Score: 100 bits (250), Expect = 1.240e-22 Identity = 56/125 (44.80%), Postives = 75/125 (60.00%), Query Frame = 1
Query: 1 YQAMVGSLIFLTKCTRFDICFSVIQAARYMSAPTQQHLVAVKRIFQYLQGHPDVPITYSRCEPKLLGYSDASYC-----TRSTTGTMFFFANGLVHFSSQLQKITATSTTEAELIALATCAKQGI 360
Y A+VGSL++L+ CTR DI +V AR+M+ PT H A K + +YL G PD+ IT+ P L + DA + RSTTG F F G + ++S+LQ A STTEAE IA AT K+G+
Sbjct: 184 YSALVGSLMYLSICTRPDIAQAVGALARHMANPTTDHWTAAKTVLRYLTGTPDIGITFGAGSPGLQVFCDADHAGDIDTRRSTTGYAFIFNGGAISWASRLQPTVAASTTEAEYIAAATTIKEGL 308
BLAST of mRNA_H-paniculata_contig40667.10506.1 vs. uniprot
Match: A0A2P6UYV9_9CHLO (Retrovirus-related Pol poly from transposon TNT 1-94 n=3 Tax=Micractinium conductrix TaxID=554055 RepID=A0A2P6UYV9_9CHLO) HSP 1 Score: 100 bits (250), Expect = 2.300e-22 Identity = 56/125 (44.80%), Postives = 75/125 (60.00%), Query Frame = 1
Query: 1 YQAMVGSLIFLTKCTRFDICFSVIQAARYMSAPTQQHLVAVKRIFQYLQGHPDVPITYSRCEPKLLGYSDASYC-----TRSTTGTMFFFANGLVHFSSQLQKITATSTTEAELIALATCAKQGI 360
Y A+VGSL++L+ CTR DI +V AR+M+ PT H A K + +YL G PD+ IT+ P L + DA + RSTTG F F G + ++S+LQ A STTEAE IA AT K+G+
Sbjct: 736 YSALVGSLMYLSICTRPDIAQAVGALARHMANPTTDHWTAAKTVLRYLTGTPDIGITFGAGSPGLQVFCDADHAGDIDTRRSTTGYAFIFNGGAISWASRLQPTVAASTTEAEYIAAATTIKEGL 860
BLAST of mRNA_H-paniculata_contig40667.10506.1 vs. uniprot
Match: A0A2P6UYV5_9CHLO (Gag-Pol poly (Fragment) n=1 Tax=Micractinium conductrix TaxID=554055 RepID=A0A2P6UYV5_9CHLO) HSP 1 Score: 100 bits (250), Expect = 2.360e-22 Identity = 56/125 (44.80%), Postives = 75/125 (60.00%), Query Frame = 1
Query: 1 YQAMVGSLIFLTKCTRFDICFSVIQAARYMSAPTQQHLVAVKRIFQYLQGHPDVPITYSRCEPKLLGYSDASYC-----TRSTTGTMFFFANGLVHFSSQLQKITATSTTEAELIALATCAKQGI 360
Y A+VGSL++L+ CTR DI +V AR+M+ PT H A K + +YL G PD+ IT+ P L + DA + RSTTG F F G + ++S+LQ A STTEAE IA AT K+G+
Sbjct: 840 YSALVGSLMYLSICTRPDIAQAVGALARHMANPTTDHWTAAKTVLRYLTGTPDIGITFGAGSPGLQVFCDADHAGDIDTRRSTTGYAFIFNGGAISWASRLQPTVAASTTEAEYIAAATTIKEGL 964
BLAST of mRNA_H-paniculata_contig40667.10506.1 vs. uniprot
Match: A0A2P6UZ08_9CHLO (Gag-Pol poly (Fragment) n=1 Tax=Micractinium conductrix TaxID=554055 RepID=A0A2P6UZ08_9CHLO) HSP 1 Score: 100 bits (250), Expect = 2.390e-22 Identity = 56/125 (44.80%), Postives = 75/125 (60.00%), Query Frame = 1
Query: 1 YQAMVGSLIFLTKCTRFDICFSVIQAARYMSAPTQQHLVAVKRIFQYLQGHPDVPITYSRCEPKLLGYSDASYC-----TRSTTGTMFFFANGLVHFSSQLQKITATSTTEAELIALATCAKQGI 360
Y A+VGSL++L+ CTR DI +V AR+M+ PT H A K + +YL G PD+ IT+ P L + DA + RSTTG F F G + ++S+LQ A STTEAE IA AT K+G+
Sbjct: 1002 YSALVGSLMYLSICTRPDIAQAVGALARHMANPTTDHWTAAKTVLRYLTGTPDIGITFGAGSPGLQVFCDADHAGDIDTRRSTTGYAFIFNGGAISWASRLQPTVAASTTEAEYIAAATTIKEGL 1126
BLAST of mRNA_H-paniculata_contig40667.10506.1 vs. uniprot
Match: A0A2P6VRK9_9CHLO (Gag-Pol poly n=2 Tax=Micractinium conductrix TaxID=554055 RepID=A0A2P6VRK9_9CHLO) HSP 1 Score: 100 bits (249), Expect = 2.960e-22 Identity = 56/125 (44.80%), Postives = 75/125 (60.00%), Query Frame = 1
Query: 1 YQAMVGSLIFLTKCTRFDICFSVIQAARYMSAPTQQHLVAVKRIFQYLQGHPDVPITYSRCEPKLLGYSDASYC-----TRSTTGTMFFFANGLVHFSSQLQKITATSTTEAELIALATCAKQGI 360
Y A+VGSL++L+ CTR DI +V AR+M+ PT H A K + +YL G PD+ IT+ P L + DA + RSTTG F F G + ++S+LQ A STTEAE IA AT K+G+
Sbjct: 414 YSALVGSLMYLSICTRPDIAQAVGALARHMANPTTDHWTAAKTVLRYLTGTPDIGITFGAGPPGLQVFCDADHAGDIDTRRSTTGYAFIFNGGAISWASRLQPTVAASTTEAEYIAAATTIKEGL 538
BLAST of mRNA_H-paniculata_contig40667.10506.1 vs. uniprot
Match: A0A2P6V0U2_9CHLO (Retrovirus-related Pol poly from transposon TNT 1-94 n=1 Tax=Micractinium conductrix TaxID=554055 RepID=A0A2P6V0U2_9CHLO) HSP 1 Score: 99.4 bits (246), Expect = 3.100e-22 Identity = 55/125 (44.00%), Postives = 75/125 (60.00%), Query Frame = 1
Query: 1 YQAMVGSLIFLTKCTRFDICFSVIQAARYMSAPTQQHLVAVKRIFQYLQGHPDVPITYSRCEPKLLGYSDASYC-----TRSTTGTMFFFANGLVHFSSQLQKITATSTTEAELIALATCAKQGI 360
Y A+VGSL++L+ CTR DI +V AR+M+ PT H A K + +YL G PD+ IT+ P L + DA + RSTTG F F G + ++S+LQ A STTEAE I+ AT K+G+
Sbjct: 182 YSALVGSLMYLSICTRPDIAQAVGALARHMANPTTDHWTAAKTVLRYLTGTPDIGITFGAGPPGLQVFCDADHAGDIDTRRSTTGYAFIFNGGAISWASRLQPTVAASTTEAEYISAATTIKEGL 306 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig40667.10506.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig40667.10506.1 >prot_H-paniculata_contig40667.10506.1 ID=prot_H-paniculata_contig40667.10506.1|Name=mRNA_H-paniculata_contig40667.10506.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=117bp MVGSLIFLTKCTRFDICFSVIQAARYMSAPTQQHLVAVKRIFQYLQGHPDback to top mRNA from alignment at H-paniculata_contig40667:159..518- Legend: UTRCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig40667.10506.1 ID=mRNA_H-paniculata_contig40667.10506.1|Name=mRNA_H-paniculata_contig40667.10506.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=360bp|location=Sequence derived from alignment at H-paniculata_contig40667:159..518- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig40667:159..518- >mRNA_H-paniculata_contig40667.10506.1 ID=mRNA_H-paniculata_contig40667.10506.1|Name=mRNA_H-paniculata_contig40667.10506.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=702bp|location=Sequence derived from alignment at H-paniculata_contig40667:159..518- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |