mRNA_H-paniculata_contig40667.10506.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig40667.10506.1
Unique NamemRNA_H-paniculata_contig40667.10506.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig40667.10506.1 vs. uniprot
Match: A0A6H5J897_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J897_9PHAE)

HSP 1 Score: 108 bits (271), Expect = 3.260e-25
Identity = 57/127 (44.88%), Postives = 84/127 (66.14%), Query Frame = 1
Query:    1 YQAMVGSLIFLTKCTRFDICFSVIQAARYMSAPTQQHLVAVKRIFQYLQGHPDVPITYSRCEPKLLGYSDASYC-------TRSTTGTMFFFANGLVHFSSQLQKITATSTTEAELIALATCAKQGI 360
            YQ +VGSL+FLT  TR++I ++V+   R M+ PT QH+V  KR+ +YL+G PD+P+ + R +  L  Y DAS+         RS+TG +F  A G+V  +S LQK+TA S+  AE+IA+AT A++ I
Sbjct:  485 YQGIVGSLLFLTNTTRWEIGYAVMVLCRGMNKPTNQHMVGAKRVLRYLRGCPDMPLKFRRGQWDLKCYCDASFAGSSERLQKRSSTGYIFILAGGVVSAASTLQKLTAQSSVHAEIIAMATAAREAI 611          
BLAST of mRNA_H-paniculata_contig40667.10506.1 vs. uniprot
Match: A0A6H5JN95_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JN95_9PHAE)

HSP 1 Score: 104 bits (260), Expect = 8.450e-24
Identity = 50/125 (40.00%), Postives = 83/125 (66.40%), Query Frame = 1
Query:    1 YQAMVGSLIFLTKCTRFDICFSVIQAARYMSAPTQQHLVAVKRIFQYLQGHPDVPITYSRCEPKLLGYSDASYCT-----RSTTGTMFFFANGLVHFSSQLQKITATSTTEAELIALATCAKQGI 360
            +QA+ GSL++LT+CTR+D+ ++V Q  R  + P Q H+ A K + +YL+G PD+PI Y + + +L  ++ +S+ T     RSTTG +FF   GL+++ ++ Q + A ST EAEL AL+  A++ +
Sbjct:  410 FQAITGSLLYLTQCTRYDLSYAVHQLTRARANPAQVHMAAPKHLLRYLRGTPDLPIVYKKVQFRLSCFTSSSFGTNPDNGRSTTGYLFFLGGGLINYGAKAQTLAAQSTAEAELQALSFSAREAV 534          
BLAST of mRNA_H-paniculata_contig40667.10506.1 vs. uniprot
Match: A0A2P6VNK8_9CHLO (Retrovirus-related Pol poly from transposon TNT 1-94 isoform B n=1 Tax=Micractinium conductrix TaxID=554055 RepID=A0A2P6VNK8_9CHLO)

HSP 1 Score: 103 bits (258), Expect = 1.940e-23
Identity = 55/125 (44.00%), Postives = 77/125 (61.60%), Query Frame = 1
Query:    1 YQAMVGSLIFLTKCTRFDICFSVIQAARYMSAPTQQHLVAVKRIFQYLQGHPDVPITYSRCEPKLLGYSDASYC-----TRSTTGTMFFFANGLVHFSSQLQKITATSTTEAELIALATCAKQGI 360
            Y A+VGSL++L+ CTR DI  +V   ARYM+ PT  H  A K + +YL G P++ IT+  C P LL + DA Y       RST+G +F    G + ++S+LQ   A STTE++ IA AT  K+G+
Sbjct:  951 YSALVGSLMYLSICTRPDIAQAVGALARYMAHPTIDHWTAAKTVLRYLAGTPNIGITFGACTPGLLTFCDADYAGDIDTRRSTSGYVFILNGGAISWASRLQPTVAASTTESDYIAAATAIKEGL 1075          
BLAST of mRNA_H-paniculata_contig40667.10506.1 vs. uniprot
Match: A0A392RPS1_9FABA (Uncharacterized protein (Fragment) n=1 Tax=Trifolium medium TaxID=97028 RepID=A0A392RPS1_9FABA)

HSP 1 Score: 96.3 bits (238), Expect = 2.880e-23
Identity = 58/128 (45.31%), Postives = 78/128 (60.94%), Query Frame = 1
Query:    1 YQAMVGSLIFLTKCTRFDICFSVIQAARYMSAPTQQHLVAVKRIFQYLQGHPDVPITYSR---CEPKLLGYSDASYC-----TRSTTGTMFFFANGLVHFSSQLQKITATSTTEAELIALATCAKQGI 360
            Y+ ++GSL++L   TR D+ FSV   ARYM  PT+ HL A KR+ +YLQG     I Y+R   CE  L G+SD+ Y       +ST+G +F +  G V  SS+ Q I   STTEAE +A A+CA QG+
Sbjct:    2 YRQLIGSLMYLLA-TRPDLAFSVCLIARYMERPTEIHLAAAKRVLRYLQGTISFGILYTRGGDCE--LEGWSDSDYAGDIDDRKSTSGYVFMYGTGAVSRSSKKQAIVTLSTTEAEFVAAASCACQGV 126          
BLAST of mRNA_H-paniculata_contig40667.10506.1 vs. uniprot
Match: A0A2P6UYX8_9CHLO (Retrotransposon Ty1-copia subclass n=1 Tax=Micractinium conductrix TaxID=554055 RepID=A0A2P6UYX8_9CHLO)

HSP 1 Score: 100 bits (250), Expect = 1.240e-22
Identity = 56/125 (44.80%), Postives = 75/125 (60.00%), Query Frame = 1
Query:    1 YQAMVGSLIFLTKCTRFDICFSVIQAARYMSAPTQQHLVAVKRIFQYLQGHPDVPITYSRCEPKLLGYSDASYC-----TRSTTGTMFFFANGLVHFSSQLQKITATSTTEAELIALATCAKQGI 360
            Y A+VGSL++L+ CTR DI  +V   AR+M+ PT  H  A K + +YL G PD+ IT+    P L  + DA +       RSTTG  F F  G + ++S+LQ   A STTEAE IA AT  K+G+
Sbjct:  184 YSALVGSLMYLSICTRPDIAQAVGALARHMANPTTDHWTAAKTVLRYLTGTPDIGITFGAGSPGLQVFCDADHAGDIDTRRSTTGYAFIFNGGAISWASRLQPTVAASTTEAEYIAAATTIKEGL 308          
BLAST of mRNA_H-paniculata_contig40667.10506.1 vs. uniprot
Match: A0A2P6UYV9_9CHLO (Retrovirus-related Pol poly from transposon TNT 1-94 n=3 Tax=Micractinium conductrix TaxID=554055 RepID=A0A2P6UYV9_9CHLO)

HSP 1 Score: 100 bits (250), Expect = 2.300e-22
Identity = 56/125 (44.80%), Postives = 75/125 (60.00%), Query Frame = 1
Query:    1 YQAMVGSLIFLTKCTRFDICFSVIQAARYMSAPTQQHLVAVKRIFQYLQGHPDVPITYSRCEPKLLGYSDASYC-----TRSTTGTMFFFANGLVHFSSQLQKITATSTTEAELIALATCAKQGI 360
            Y A+VGSL++L+ CTR DI  +V   AR+M+ PT  H  A K + +YL G PD+ IT+    P L  + DA +       RSTTG  F F  G + ++S+LQ   A STTEAE IA AT  K+G+
Sbjct:  736 YSALVGSLMYLSICTRPDIAQAVGALARHMANPTTDHWTAAKTVLRYLTGTPDIGITFGAGSPGLQVFCDADHAGDIDTRRSTTGYAFIFNGGAISWASRLQPTVAASTTEAEYIAAATTIKEGL 860          
BLAST of mRNA_H-paniculata_contig40667.10506.1 vs. uniprot
Match: A0A2P6UYV5_9CHLO (Gag-Pol poly (Fragment) n=1 Tax=Micractinium conductrix TaxID=554055 RepID=A0A2P6UYV5_9CHLO)

HSP 1 Score: 100 bits (250), Expect = 2.360e-22
Identity = 56/125 (44.80%), Postives = 75/125 (60.00%), Query Frame = 1
Query:    1 YQAMVGSLIFLTKCTRFDICFSVIQAARYMSAPTQQHLVAVKRIFQYLQGHPDVPITYSRCEPKLLGYSDASYC-----TRSTTGTMFFFANGLVHFSSQLQKITATSTTEAELIALATCAKQGI 360
            Y A+VGSL++L+ CTR DI  +V   AR+M+ PT  H  A K + +YL G PD+ IT+    P L  + DA +       RSTTG  F F  G + ++S+LQ   A STTEAE IA AT  K+G+
Sbjct:  840 YSALVGSLMYLSICTRPDIAQAVGALARHMANPTTDHWTAAKTVLRYLTGTPDIGITFGAGSPGLQVFCDADHAGDIDTRRSTTGYAFIFNGGAISWASRLQPTVAASTTEAEYIAAATTIKEGL 964          
BLAST of mRNA_H-paniculata_contig40667.10506.1 vs. uniprot
Match: A0A2P6UZ08_9CHLO (Gag-Pol poly (Fragment) n=1 Tax=Micractinium conductrix TaxID=554055 RepID=A0A2P6UZ08_9CHLO)

HSP 1 Score: 100 bits (250), Expect = 2.390e-22
Identity = 56/125 (44.80%), Postives = 75/125 (60.00%), Query Frame = 1
Query:    1 YQAMVGSLIFLTKCTRFDICFSVIQAARYMSAPTQQHLVAVKRIFQYLQGHPDVPITYSRCEPKLLGYSDASYC-----TRSTTGTMFFFANGLVHFSSQLQKITATSTTEAELIALATCAKQGI 360
            Y A+VGSL++L+ CTR DI  +V   AR+M+ PT  H  A K + +YL G PD+ IT+    P L  + DA +       RSTTG  F F  G + ++S+LQ   A STTEAE IA AT  K+G+
Sbjct: 1002 YSALVGSLMYLSICTRPDIAQAVGALARHMANPTTDHWTAAKTVLRYLTGTPDIGITFGAGSPGLQVFCDADHAGDIDTRRSTTGYAFIFNGGAISWASRLQPTVAASTTEAEYIAAATTIKEGL 1126          
BLAST of mRNA_H-paniculata_contig40667.10506.1 vs. uniprot
Match: A0A2P6VRK9_9CHLO (Gag-Pol poly n=2 Tax=Micractinium conductrix TaxID=554055 RepID=A0A2P6VRK9_9CHLO)

HSP 1 Score: 100 bits (249), Expect = 2.960e-22
Identity = 56/125 (44.80%), Postives = 75/125 (60.00%), Query Frame = 1
Query:    1 YQAMVGSLIFLTKCTRFDICFSVIQAARYMSAPTQQHLVAVKRIFQYLQGHPDVPITYSRCEPKLLGYSDASYC-----TRSTTGTMFFFANGLVHFSSQLQKITATSTTEAELIALATCAKQGI 360
            Y A+VGSL++L+ CTR DI  +V   AR+M+ PT  H  A K + +YL G PD+ IT+    P L  + DA +       RSTTG  F F  G + ++S+LQ   A STTEAE IA AT  K+G+
Sbjct:  414 YSALVGSLMYLSICTRPDIAQAVGALARHMANPTTDHWTAAKTVLRYLTGTPDIGITFGAGPPGLQVFCDADHAGDIDTRRSTTGYAFIFNGGAISWASRLQPTVAASTTEAEYIAAATTIKEGL 538          
BLAST of mRNA_H-paniculata_contig40667.10506.1 vs. uniprot
Match: A0A2P6V0U2_9CHLO (Retrovirus-related Pol poly from transposon TNT 1-94 n=1 Tax=Micractinium conductrix TaxID=554055 RepID=A0A2P6V0U2_9CHLO)

HSP 1 Score: 99.4 bits (246), Expect = 3.100e-22
Identity = 55/125 (44.00%), Postives = 75/125 (60.00%), Query Frame = 1
Query:    1 YQAMVGSLIFLTKCTRFDICFSVIQAARYMSAPTQQHLVAVKRIFQYLQGHPDVPITYSRCEPKLLGYSDASYC-----TRSTTGTMFFFANGLVHFSSQLQKITATSTTEAELIALATCAKQGI 360
            Y A+VGSL++L+ CTR DI  +V   AR+M+ PT  H  A K + +YL G PD+ IT+    P L  + DA +       RSTTG  F F  G + ++S+LQ   A STTEAE I+ AT  K+G+
Sbjct:  182 YSALVGSLMYLSICTRPDIAQAVGALARHMANPTTDHWTAAKTVLRYLTGTPDIGITFGAGPPGLQVFCDADHAGDIDTRRSTTGYAFIFNGGAISWASRLQPTVAASTTEAEYISAATTIKEGL 306          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig40667.10506.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5J897_9PHAE3.260e-2544.88Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JN95_9PHAE8.450e-2440.00Integrase catalytic domain-containing protein n=1 ... [more]
A0A2P6VNK8_9CHLO1.940e-2344.00Retrovirus-related Pol poly from transposon TNT 1-... [more]
A0A392RPS1_9FABA2.880e-2345.31Uncharacterized protein (Fragment) n=1 Tax=Trifoli... [more]
A0A2P6UYX8_9CHLO1.240e-2244.80Retrotransposon Ty1-copia subclass n=1 Tax=Micract... [more]
A0A2P6UYV9_9CHLO2.300e-2244.80Retrovirus-related Pol poly from transposon TNT 1-... [more]
A0A2P6UYV5_9CHLO2.360e-2244.80Gag-Pol poly (Fragment) n=1 Tax=Micractinium condu... [more]
A0A2P6UZ08_9CHLO2.390e-2244.80Gag-Pol poly (Fragment) n=1 Tax=Micractinium condu... [more]
A0A2P6VRK9_9CHLO2.960e-2244.80Gag-Pol poly n=2 Tax=Micractinium conductrix TaxID... [more]
A0A2P6V0U2_9CHLO3.100e-2244.00Retrovirus-related Pol poly from transposon TNT 1-... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig40667contigH-paniculata_contig40667:159..518 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeArthropoda
Seed ortholog score95.9
Seed ortholog evalue1.3e-17
Seed eggNOG ortholog7425.NV18849-PA
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Reverse transcriptase (RNA-dependent DNA polymerase)
EggNOG OGs38DPC@33154,3BGB6@33208,3D5G4@33213,3SKEY@50557,41ZUZ@6656,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelInsecta
Best eggNOG OGNA|NA|NA
Exons1
Model size360
Cds size351
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930244.0326235-CDS-H-paniculata_contig40667:158..5091622930244.0326235-CDS-H-paniculata_contig40667:158..509Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig40667 159..509 -
1691481207.4734793-CDS-H-paniculata_contig40667:158..5091691481207.4734793-CDS-H-paniculata_contig40667:158..509Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig40667 159..509 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930244.0531502-UTR-H-paniculata_contig40667:509..5181622930244.0531502-UTR-H-paniculata_contig40667:509..518Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig40667 510..518 -
1691481207.483494-UTR-H-paniculata_contig40667:509..5181691481207.483494-UTR-H-paniculata_contig40667:509..518Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig40667 510..518 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig40667.10506.1prot_H-paniculata_contig40667.10506.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig40667 159..509 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig40667.10506.1

>prot_H-paniculata_contig40667.10506.1 ID=prot_H-paniculata_contig40667.10506.1|Name=mRNA_H-paniculata_contig40667.10506.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=117bp
MVGSLIFLTKCTRFDICFSVIQAARYMSAPTQQHLVAVKRIFQYLQGHPD
VPITYSRCEPKLLGYSDASYCTRSTTGTMFFFANGLVHFSSQLQKITATS
TTEAELIALATCAKQGI
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mRNA from alignment at H-paniculata_contig40667:159..518-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig40667.10506.1 ID=mRNA_H-paniculata_contig40667.10506.1|Name=mRNA_H-paniculata_contig40667.10506.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=360bp|location=Sequence derived from alignment at H-paniculata_contig40667:159..518- (Halopteris paniculata Hal_grac_a_UBK monoicous)
TATCAAGCCATGGTAGGGAGCCTCATTTTCTTGACCAAGTGTACAAGATT CGACATCTGCTTCAGCGTCATCCAAGCCGCACGCTACATGAGCGCACCAA CTCAACAGCATCTAGTCGCAGTAAAGCGGATTTTTCAGTATTTACAGGGT CACCCAGATGTTCCCATCACGTACAGCAGATGTGAGCCGAAACTACTCGG CTATTCTGATGCATCATACTGCACACGGTCTACAACAGGCACTATGTTCT TCTTTGCCAACGGATTAGTACACTTCTCATCTCAACTACAGAAGATAACG GCTACAAGCACAACTGAGGCAGAACTCATCGCATTGGCTACATGCGCAAA GCAAGGCATT
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Coding sequence (CDS) from alignment at H-paniculata_contig40667:159..518-

>mRNA_H-paniculata_contig40667.10506.1 ID=mRNA_H-paniculata_contig40667.10506.1|Name=mRNA_H-paniculata_contig40667.10506.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=702bp|location=Sequence derived from alignment at H-paniculata_contig40667:159..518- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGTAGGGAGCCTCATTTTCTTGACCAAGTGTACAAGATTCGACATCTG
CTTCAGCGTCATCCAAGCCGCACGCTACATGAGCGCACCAACTCAACAGC
ATCTAGTCGCAGTAAAGCGGATTTTTCAGTATTTACAGGGTCACCCAGAT
GTTCCCATCACGTACAGCAGATGTGAGCCGAAACTACTCGGCTATTCTGA
TGCATCATACTGCACACGGTCTACAACAGGCACTATGTTCTTCTTTGCCA
ACGGATTAGTACACTTCTCATCTCAACTACAGAAGATAACGGCTACAAGC
ACAACTGAGGCAGAACTCATCGCATTGGCTACATGCGCAAAGCAAGGCAT
TATGGTAGGGAGCCTCATTTTCTTGACCAAGTGTACAAGATTCGACATCT
GCTTCAGCGTCATCCAAGCCGCACGCTACATGAGCGCACCAACTCAACAG
CATCTAGTCGCAGTAAAGCGGATTTTTCAGTATTTACAGGGTCACCCAGA
TGTTCCCATCACGTACAGCAGATGTGAGCCGAAACTACTCGGCTATTCTG
ATGCATCATACTGCACACGGTCTACAACAGGCACTATGTTCTTCTTTGCC
AACGGATTAGTACACTTCTCATCTCAACTACAGAAGATAACGGCTACAAG
CACAACTGAGGCAGAACTCATCGCATTGGCTACATGCGCAAAGCAAGGCA
TT
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