mRNA_H-paniculata_contig4046.10468.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig4046.10468.1 vs. uniprot
Match: A0A6H5JBN2_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBN2_9PHAE) HSP 1 Score: 93.6 bits (231), Expect = 1.780e-19 Identity = 50/131 (38.17%), Postives = 79/131 (60.31%), Query Frame = 2
Query: 32 SEAE*GHVWAQAGGRMWSKRLVEVLVDKVDMAQSKSDPCMFRLGKRGVVDMILCVHVDDVIVSGKSVECESLFAALRAEFQTTR-GELKWYLGCAFWHDMVRGVVRITQ--FIDTVIKRFGVETESDLPAS 415
++AE + GR W + LV+ Q K+DPC+FR VV MI+ ++VDD++V+G +CE L A+L +F T GE +W+ GCA D+ G ++I+Q +ID+++KRF V++ S +PAS
Sbjct: 609 AKAERAIYGLKQSGRQWGYHAADTLVEN-GFEQCKADPCVFRKMVDEVVVMIIVIYVDDILVAGSDEDCEELLASLNKKFPTRNVGECEWFDGCAIERDVEAGNLKISQTAYIDSMVKRFDVQSTSRIPAS 738
BLAST of mRNA_H-paniculata_contig4046.10468.1 vs. uniprot
Match: A0A6H5JC10_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JC10_9PHAE) HSP 1 Score: 92.4 bits (228), Expect = 4.450e-19 Identity = 50/131 (38.17%), Postives = 78/131 (59.54%), Query Frame = 2
Query: 32 SEAE*GHVWAQAGGRMWSKRLVEVLVDKVDMAQSKSDPCMFRLGKRGVVDMILCVHVDDVIVSGKSVECESLFAALRAEFQTTR-GELKWYLGCAFWHDMVRGVVRITQ--FIDTVIKRFGVETESDLPAS 415
++AE + GR W + LV+ Q K+DPC+FR VV MI+ ++VDD++V+G +CE L A+L +F T E +W+ GCA D+ G +RI+Q +ID+++KRF V++ S +PAS
Sbjct: 433 AKAERAIYGLKQSGRQWGYHAADTLVEN-GFEQCKADPCVFRKMVDEVVVMIIVIYVDDILVAGSDEDCEELLASLSKKFPTKNLEECQWFDGCAIERDVETGTLRISQTAYIDSMVKRFDVQSTSRIPAS 562
BLAST of mRNA_H-paniculata_contig4046.10468.1 vs. uniprot
Match: A0A6H5JSU5_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JSU5_9PHAE) HSP 1 Score: 90.5 bits (223), Expect = 2.070e-18 Identity = 49/122 (40.16%), Postives = 74/122 (60.66%), Query Frame = 2
Query: 59 AQAGGRMWSKRLVEVLVDKVDMAQSKSDPCMFRLGKRGVVDMILCVHVDDVIVSGKSVECESLFAALRAEFQTTR-GELKWYLGCAFWHDMVRGVVRITQ--FIDTVIKRFGVETESDLPAS 415
A G R W E LV+ Q ++DPC+FR VV MIL ++VDD++V+G +CE L +L+ E + GE +W+ GCA D+ G +RI+Q +ID+++KRF V++ S +PAS
Sbjct: 373 APEGHRPWGYHAAETLVEN-GFEQCEADPCIFRKMVDEVVVMILVIYVDDILVAGSDEDCEELLPSLQQEISHQKLGECEWFDGCATERDVEAGTLRISQTAYIDSMVKRFDVQSTSRIPAS 493
BLAST of mRNA_H-paniculata_contig4046.10468.1 vs. uniprot
Match: A0A6H5JJY0_9PHAE (CCHC-type domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJY0_9PHAE) HSP 1 Score: 85.1 bits (209), Expect = 1.650e-16 Identity = 45/120 (37.50%), Postives = 72/120 (60.00%), Query Frame = 2
Query: 74 RMWSKRLVEVLVDKVDMAQSKSDPCMFRLGKRGVVDMILCVHVDDVIVSGKSVECESLFAALRAEFQTTR-GELKWYLGCAFWHDMVRGVVRITQ--FIDTVIKRFGVETESDLPASQQA 424
R W + LV+ + K+D C+FR VV MI+ ++ DD++V+G +CE L A+L +F T GE +W+ GCA D+ G +RI+Q +ID+++KRF V++ S +PA+ A
Sbjct: 779 RQWGYLAADTLVEN-GFEECKADRCVFRKMVDEVVVMIIVIYADDILVAGSDEDCEELLASLNKKFPTKNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMLKRFDVQSTSRIPATPGA 897
BLAST of mRNA_H-paniculata_contig4046.10468.1 vs. uniprot
Match: A0A6H5K123_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K123_9PHAE) HSP 1 Score: 63.9 bits (154), Expect = 2.410e-9 Identity = 33/84 (39.29%), Postives = 53/84 (63.10%), Query Frame = 2
Query: 173 VVDMILCVHVDDVIVSGKSVECESLFAALRAEFQTTR-GELKWYLGCAFWHDMVRGVVRI--TQFIDTVIKRFGVETESDLPAS 415
VV MI+ ++VD ++V G +C+ L A+L +F T GE +W+ CA D+ G + I T +ID+++KRF V++ S +PAS
Sbjct: 5 VVVMIIVIYVDIILVDGSDEDCKELLASLNKKFPTKNLGECEWFDRCAIDRDVEAGTLNISETAYIDSMVKRFDVQSTSRIPAS 88
BLAST of mRNA_H-paniculata_contig4046.10468.1 vs. uniprot
Match: A0A6H5KV13_9PHAE (CCHC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KV13_9PHAE) HSP 1 Score: 62.8 bits (151), Expect = 1.050e-8 Identity = 31/78 (39.74%), Postives = 50/78 (64.10%), Query Frame = 2
Query: 200 VDDVIVSGKSVECESLFAALRAEFQTTR-GELKWYLGCAFWHDMVRGVVRI--TQFIDTVIKRFGVETESDLPASQQA 424
VDD++V+G +CE L A+L +F GE +W+ GCA D+ G ++I T +ID+++KRF V++ S +PA+ A
Sbjct: 1089 VDDILVAGSDEDCEELLASLNEKFLNNNLGECQWFDGCAIERDVEAGTLKISRTAYIDSMVKRFDVQSTSRIPATPGA 1166
BLAST of mRNA_H-paniculata_contig4046.10468.1 vs. uniprot
Match: A0A6H5JQU4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQU4_9PHAE) HSP 1 Score: 60.1 bits (144), Expect = 8.770e-8 Identity = 40/118 (33.90%), Postives = 60/118 (50.85%), Query Frame = 2
Query: 71 GRMWSKRLVEVLVDKVDMAQSKSDPCMFRLGKRGVVDMILCVHVDDVIVSGKSVECESLFAALRAEFQTTR-GELKWYLGCAFWHDMVRGVVRITQ--FIDTVIKRFGVETESDLPAS 415
GR W + LV+ Q K+DP +FR VD+V+ L A+L +F T GE +W+ GCA D+ G +RI+Q +ID+++KRF V++ S +PAS
Sbjct: 587 GRRWGSHAADTLVEN-GFEQCKADPWVFRK------------MVDEVV---------ELLASLHKKFPTKNLGEFEWFDGCAIERDVEAGTLRISQTAYIDSMVKRFDVQSTSRIPAS 682
BLAST of mRNA_H-paniculata_contig4046.10468.1 vs. uniprot
Match: A0A251TG75_HELAN (Putative reverse transcriptase, RNA-dependent DNA polymerase, Gag-polypeptide of LTR copia-type n=2 Tax=Helianthus annuus TaxID=4232 RepID=A0A251TG75_HELAN) HSP 1 Score: 52.8 bits (125), Expect = 3.130e-5 Identity = 35/80 (43.75%), Postives = 49/80 (61.25%), Query Frame = 2
Query: 74 RMWSKRLVEVLVDKVDMAQSKSDPCMFRLGKRGVVDMILCVHVDDVIVSGKSV-ECESLFAALRAEFQTTR-GELKWYLG 307
R W++RL VLVD QSK D M+ L K+ V +IL V+VDD++V+G SV E + L + FQ G+LK++LG
Sbjct: 674 RKWNERLNSVLVD-YGFVQSKCDHSMYVLAKQKVF-VILLVYVDDIVVTGNSVDEVSKIKGILNSNFQIKDLGKLKYFLG 751 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig4046.10468.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 8
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig4046.10468.1 >prot_H-paniculata_contig4046.10468.1 ID=prot_H-paniculata_contig4046.10468.1|Name=mRNA_H-paniculata_contig4046.10468.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=116bp MWSKRLVEVLVDKVDMAQSKSDPCMFRLGKRGVVDMILCVHVDDVIVSGKback to top mRNA from alignment at H-paniculata_contig4046:843..1266+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig4046.10468.1 ID=mRNA_H-paniculata_contig4046.10468.1|Name=mRNA_H-paniculata_contig4046.10468.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=424bp|location=Sequence derived from alignment at H-paniculata_contig4046:843..1266+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig4046:843..1266+ >mRNA_H-paniculata_contig4046.10468.1 ID=mRNA_H-paniculata_contig4046.10468.1|Name=mRNA_H-paniculata_contig4046.10468.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=696bp|location=Sequence derived from alignment at H-paniculata_contig4046:843..1266+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |