prot_H-paniculata_contig40302.10439.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig40302.10439.1
Unique Nameprot_H-paniculata_contig40302.10439.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length133
Homology
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BLAST of mRNA_H-paniculata_contig40302.10439.1 vs. uniprot
Match: A0A6H5JR49_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JR49_9PHAE)

HSP 1 Score: 55.5 bits (132), Expect = 2.490e-6
Identity = 41/121 (33.88%), Postives = 61/121 (50.41%), Query Frame = 0 
Query:    2 DPERVRNAQKAWITLITTCKGMA-LKIVQSTESPSEVWRKLQKHYRASGLTGKSRLLREFNSLRMESGEESTKFILRVDRVTNDLERLGRTVDEDDGNLAIVNGLSPEYDIERRMIESSDD 121
            D  RV  A  AW  LI++   M  L  V S  SPS  W    K+Y       K RLL+E++S  M+SGE   ++  R   + + L   G    +++ N  +V+ LS +Y +ERRM+ +  D
Sbjct:  197 DALRVAKAIAAWNLLISSISYMPILSEVVSDGSPSGRWMIFLKYYEPQARAEKKRLLKEYHSFYMKSGEIPQEYFGRFYILRSRLASHGTIYPDNEANDHLVSALSSDYTLERRMLHNMAD 317
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig40302.10439.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JR49_9PHAE2.490e-633.88Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePFAMPF14223Retrotran_gag_2coord: 8..124
e-value: 8.4E-20
score: 70.9

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig40302contigH-paniculata_contig40302:226..624 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig40302.10439.1mRNA_H-paniculata_contig40302.10439.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig40302 226..624 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig40302.10439.1 ID=prot_H-paniculata_contig40302.10439.1|Name=mRNA_H-paniculata_contig40302.10439.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=133bp
TDPERVRNAQKAWITLITTCKGMALKIVQSTESPSEVWRKLQKHYRASGL
TGKSRLLREFNSLRMESGEESTKFILRVDRVTNDLERLGRTVDEDDGNLA
IVNGLSPEYDIERRMIESSDDTPNRARIDTIIA
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