mRNA_H-paniculata_contig40302.10439.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig40302.10439.1
Unique NamemRNA_H-paniculata_contig40302.10439.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig40302.10439.1 vs. uniprot
Match: A0A6H5JR49_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JR49_9PHAE)

HSP 1 Score: 55.5 bits (132), Expect = 2.490e-6
Identity = 41/121 (33.88%), Postives = 61/121 (50.41%), Query Frame = 1 
Query:    4 DPERVRNAQKAWITLITTCKGMA-LKIVQSTESPSEVWRKLQKHYRASGLTGKSRLLREFNSLRMESGEESTKFILRVDRVTNDLERLGRTVDEDDGNLAIVNGLSPEYDIERRMIESSDD 363
            D  RV  A  AW  LI++   M  L  V S  SPS  W    K+Y       K RLL+E++S  M+SGE   ++  R   + + L   G    +++ N  +V+ LS +Y +ERRM+ +  D
Sbjct:  197 DALRVAKAIAAWNLLISSISYMPILSEVVSDGSPSGRWMIFLKYYEPQARAEKKRLLKEYHSFYMKSGEIPQEYFGRFYILRSRLASHGTIYPDNEANDHLVSALSSDYTLERRMLHNMAD 317
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig40302.10439.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JR49_9PHAE2.490e-633.88Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig40302contigH-paniculata_contig40302:226..624 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size399
Cds size399
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930234.6612554-CDS-H-paniculata_contig40302:225..6241622930234.6612554-CDS-H-paniculata_contig40302:225..624Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig40302 226..624 -
1691481203.1421416-CDS-H-paniculata_contig40302:225..6241691481203.1421416-CDS-H-paniculata_contig40302:225..624Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig40302 226..624 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig40302.10439.1prot_H-paniculata_contig40302.10439.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig40302 226..624 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig40302.10439.1

>prot_H-paniculata_contig40302.10439.1 ID=prot_H-paniculata_contig40302.10439.1|Name=mRNA_H-paniculata_contig40302.10439.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=133bp
TDPERVRNAQKAWITLITTCKGMALKIVQSTESPSEVWRKLQKHYRASGL
TGKSRLLREFNSLRMESGEESTKFILRVDRVTNDLERLGRTVDEDDGNLA
IVNGLSPEYDIERRMIESSDDTPNRARIDTIIA
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mRNA from alignment at H-paniculata_contig40302:226..624-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig40302.10439.1 ID=mRNA_H-paniculata_contig40302.10439.1|Name=mRNA_H-paniculata_contig40302.10439.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=399bp|location=Sequence derived from alignment at H-paniculata_contig40302:226..624- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ACAGACCCCGAGAGGGTGCGGAACGCGCAAAAGGCGTGGATCACACTAAT
CACGACCTGCAAAGGCATGGCGCTGAAGATCGTCCAGAGCACCGAGTCGC
CCAGTGAGGTGTGGAGGAAGCTCCAAAAGCACTACCGCGCTAGCGGTCTC
ACAGGGAAGTCACGTTTGCTGCGCGAATTTAACTCCCTCAGGATGGAGTC
CGGAGAAGAATCCACAAAATTCATTTTGCGGGTGGACCGGGTCACCAATG
ACTTGGAACGACTTGGGAGGACCGTCGACGAAGATGACGGGAATCTGGCG
ATAGTGAACGGGCTATCACCAGAGTATGACATTGAGAGGAGAATGATCGA
GAGCAGCGATGACACGCCAAATAGAGCGCGCATCGACACGATCATCGCA
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Coding sequence (CDS) from alignment at H-paniculata_contig40302:226..624-

>mRNA_H-paniculata_contig40302.10439.1 ID=mRNA_H-paniculata_contig40302.10439.1|Name=mRNA_H-paniculata_contig40302.10439.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=798bp|location=Sequence derived from alignment at H-paniculata_contig40302:226..624- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ACAGACCCCGAGAGGGTGCGGAACGCGCAAAAGGCGTGGATCACACTAAT
CACGACCTGCAAAGGCATGGCGCTGAAGATCGTCCAGAGCACCGAGTCGC
CCAGTGAGGTGTGGAGGAAGCTCCAAAAGCACTACCGCGCTAGCGGTCTC
ACAGGGAAGTCACGTTTGCTGCGCGAATTTAACTCCCTCAGGATGGAGTC
CGGAGAAGAATCCACAAAATTCATTTTGCGGGTGGACCGGGTCACCAATG
ACTTGGAACGACTTGGGAGGACCGTCGACGAAGATGACGGGAATCTGGCG
ATAGTGAACGGGCTATCACCAGAGTATGACATTGAGAGGAGAATGATCGA
GAGCAGCGATGACACGCCAAATAGAGCGCGCATCGACACGATCATCGCAA
CAGACCCCGAGAGGGTGCGGAACGCGCAAAAGGCGTGGATCACACTAATC
ACGACCTGCAAAGGCATGGCGCTGAAGATCGTCCAGAGCACCGAGTCGCC
CAGTGAGGTGTGGAGGAAGCTCCAAAAGCACTACCGCGCTAGCGGTCTCA
CAGGGAAGTCACGTTTGCTGCGCGAATTTAACTCCCTCAGGATGGAGTCC
GGAGAAGAATCCACAAAATTCATTTTGCGGGTGGACCGGGTCACCAATGA
CTTGGAACGACTTGGGAGGACCGTCGACGAAGATGACGGGAATCTGGCGA
TAGTGAACGGGCTATCACCAGAGTATGACATTGAGAGGAGAATGATCGAG
AGCAGCGATGACACGCCAAATAGAGCGCGCATCGACACGATCATCGCA
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