prot_H-paniculata_contig4006.10388.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig4006.10388.1
Unique Nameprot_H-paniculata_contig4006.10388.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length198
Homology
BLAST of mRNA_H-paniculata_contig4006.10388.1 vs. uniprot
Match: D7FUI0_ECTSI (Rab32C, RAB family GTPase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUI0_ECTSI)

HSP 1 Score: 276 bits (706), Expect = 1.960e-91
Identity = 133/198 (67.17%), Postives = 168/198 (84.85%), Query Frame = 0
Query:    3 MASTVDSSPPVIKILVLGDAAVGKTSVIRRYVDNVFSSAHQPTVGVDFFLKEIPIDACRGATVH--TVRVQLWDIAGQDRSKKVNRVYYKGALGALIVYDISRPETFDSAEKWKKELDNNVTLPNGEALPVVLLGNKVDLEMAAVDVAYVDRYVKKHGFIAWCDVSAKDASNAEFKVSVAWLIQNILCCEELFGPGMR 198
            M+S  ++SP VIKILV+GDA VGKTSVI+R+V++ FS  H+PT+GVDFF+KE+ ++  +  +    TVRVQLWDIAGQDR++K+NR Y+KGALGAL+VYDISRP+TFDSA KWK+ELD N+TLPNG +LPVVLLGNKVDLE+A VDV+Y+D +V+ H F+AW DVSAKDA N +F++SVA LIQ +LC EELFGPGMR
Sbjct:    1 MSSAAETSP-VIKILVVGDAGVGKTSVIQRFVNDEFSPTHRPTIGVDFFIKEVALNGDQSESFPGTTVRVQLWDIAGQDRARKMNRAYFKGALGALVVYDISRPQTFDSAAKWKQELDANITLPNGSSLPVVLLGNKVDLEVAKVDVSYIDSFVETHRFVAWSDVSAKDAINGDFEMSVACLIQKLLCDEELFGPGMR 197          
BLAST of mRNA_H-paniculata_contig4006.10388.1 vs. uniprot
Match: A0A7S2V4T6_9STRA (Ras-related protein Rab n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V4T6_9STRA)

HSP 1 Score: 197 bits (501), Expect = 7.640e-61
Identity = 97/175 (55.43%), Postives = 126/175 (72.00%), Query Frame = 0
Query:   13 VIKILVLGDAAVGKTSVIRRYVDNVFSSAHQPTVGVDFFLKEIPIDACRGATVHTVRVQLWDIAGQDRSKKVNRVYYKGALGALIVYDISRPETFDSAEKWKKELDNNVTLPNGEALPVVLLGNKVDLEMAAVDVAYVDRYVKKHGFIAWCDVSAKDASNAEFKVSVAWLIQNIL 187
            V+K+LVLGD A GKTS+I+RYV N FS+ H+ TVGVDF LK++ +   RG  V   R+QLWDIAGQDR   + RVYYK A GA++VYD++RP TF+   KWK+E+D  V+LPNGE +PVVLLGNK DLE A VD  Y+D + K+HGF+ W D SAK  +N     +  +L++ IL
Sbjct:    9 VLKVLVLGDPATGKTSIIKRYVHNFFSTHHKTTVGVDFALKQLHV---RGTDV---RLQLWDIAGQDRFGAIARVYYKDAFGAMLVYDVTRPPTFEMVSKWKEEIDTKVSLPNGEPIPVVLLGNKSDLEKAKVDTEYLDEFCKQHGFVGWFDTSAK--TNQNIVEAATFLVEKIL 175          
BLAST of mRNA_H-paniculata_contig4006.10388.1 vs. uniprot
Match: A0A6V1S8I5_HETAK (Ras-related protein Rab n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1S8I5_HETAK)

HSP 1 Score: 189 bits (480), Expect = 1.240e-57
Identity = 92/184 (50.00%), Postives = 125/184 (67.93%), Query Frame = 0
Query:   15 KILVLGDAAVGKTSVIRRYVDNVFSSAHQPTVGVDFFLKEIPIDACRGATVHTVRVQLWDIAGQDRSKKVNRVYYKGALGALIVYDISRPETFDSAEKWKKELDNNVTLPNGEALPVVLLGNKVDLEMAAVDVAYVDRYVKKHGFIAWCDVSAKDASNAEFKVSVAWLIQNILCCEELFGPGMR 198
            K+LVLGD A GKTS+I+RYV N FS  H+ TVGVDF LK + ++         V++QLWDIAGQDR   + R YYK + GALIVYD SRP TFD+ EKWK+E+D+ V LP+G  +P+VLL NK DL+ A VD +Y+D++ ++HGFI W D SA+   N   + +  +L+ N+L   +L  P  +
Sbjct:   11 KVLVLGDPATGKTSIIKRYVHNFFSDHHKTTVGVDFALKALNVNGTE------VKMQLWDIAGQDRFGVIARTYYKDSYGALIVYDASRPPTFDTVEKWKREIDDKVKLPDGSNIPIVLLANKCDLDKAEVDKSYLDQFCQEHGFIGWFDTSAR--LNINIEQACRFLVDNLLEKRDLLNPPAK 186          
BLAST of mRNA_H-paniculata_contig4006.10388.1 vs. uniprot
Match: A0A1V9YUT9_9STRA (Ras-related protein Rab n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9YUT9_9STRA)

HSP 1 Score: 189 bits (479), Expect = 2.400e-57
Identity = 92/162 (56.79%), Postives = 119/162 (73.46%), Query Frame = 0
Query:   13 VIKILVLGDAAVGKTSVIRRYVDNVFSSAHQPTVGVDFFLKEIPIDACRGATVHTVRVQLWDIAGQDRSKKVNRVYYKGALGALIVYDISRPETFDSAEKWKKELDNNVTLPNGEALPVVLLGNKVDLEMAAVDVAYVDRYVKKHGFIAWCDVSAKDASNAE 174
            V+K+LVLGDAA GKTS+I+RYV NVFS  H+ T+GVDF LK + ++        T+RVQLWDIAGQ+  + +NRVYYK ALGAL+VYD+SRP+TF+SA KWKKE+D  V LPN + LPV+L GNK DL    VD A++D + + +GF  W D SAK+  N +
Sbjct:   14 VVKVLVLGDAATGKTSIIKRYVHNVFSDHHKTTIGVDFALKPVTVNGT------TLRVQLWDIAGQEHFRALNRVYYKDALGALVVYDMSRPDTFESAIKWKKEIDTKVELPNKKPLPVILCGNKCDLA-GEVDRAFLDEFCETNGFAGWFDTSAKENKNID 168          
BLAST of mRNA_H-paniculata_contig4006.10388.1 vs. uniprot
Match: A0A7S2S186_9STRA (Ras-related protein Rab n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2S186_9STRA)

HSP 1 Score: 189 bits (479), Expect = 2.710e-57
Identity = 94/186 (50.54%), Postives = 129/186 (69.35%), Query Frame = 0
Query:   13 VIKILVLGDAAVGKTSVIRRYVDNVFSSAHQPTVGVDFFLKEIPIDACRGATVHTVRVQLWDIAGQDRSKKVNRVYYKGALGALIVYDISRPETFDSAEKWKKELDNNVTLPNGEALPVVLLGNKVDLEMAAVDVAYVDRYVKKHGFIAWCDVSAKDASNAEFKVSVAWLIQNILCCEELFGPGMR 198
            V+K+LVLGD A GKTS+I+RYV N FS+ H+ TVGVDF LK++ +          VR+QLWDIAGQDR   ++RVYYK ALGA +VYD++RP TFD+  KWK E+D  V LPN E LPVVLL NK D+E   +D   +D++ ++HGFIAW + SAK  ++ +   +  +L++NIL  E++F    +
Sbjct:    8 VLKVLVLGDPATGKTSIIKRYVHNFFSNHHRTTVGVDFALKQLTVRN------QLVRLQLWDIAGQDRFGAISRVYYKDALGAFLVYDLARPATFDTVVKWKGEIDAKVVLPNHEPLPVVLLANKCDIEGVKIDSDALDKFCEEHGFIAWFETSAK--TDHKIDAAARFLLENILEHEDIFAEKAK 185          
BLAST of mRNA_H-paniculata_contig4006.10388.1 vs. uniprot
Match: H3HAQ4_PHYRM (Ras-related protein Rab n=17 Tax=Peronosporaceae TaxID=4777 RepID=H3HAQ4_PHYRM)

HSP 1 Score: 187 bits (474), Expect = 1.410e-56
Identity = 96/181 (53.04%), Postives = 126/181 (69.61%), Query Frame = 0
Query:   13 VIKILVLGDAAVGKTSVIRRYVDNVFSSAHQPTVGVDFFLKEIPIDACRGATVHTVRVQLWDIAGQDRSKKVNRVYYKGALGALIVYDISRPETFDSAEKWKKELDNNVTLPNGEALPVVLLGNKVDLEMAAVDVAYVDRYVKKHGFIAWCDVSAKDASNAEFKVSVAWLIQNILCCEELF 193
            VIK+LVLGDAA GKTS+I+RYV + FS  H+ T+GVDF LK + ++        TVR+QLWDIAGQ+  + +NRVYYK ALGAL+VYD+SRPETFDS  KWKKE+D+ V LPNG+ LPV+L GNK DL+   VD  ++D + K + F  W D SAK+  N     +   L+  IL  +++F
Sbjct:   13 VIKVLVLGDAATGKTSIIKRYVHDAFSEHHRTTIGVDFALKAVTVNGT------TVRLQLWDIAGQEHFRALNRVYYKDALGALLVYDMSRPETFDSVLKWKKEIDSKVELPNGKPLPVILCGNKCDLK-EDVDREFLDEFCKTNNFTGWFDTSAKE--NIHIDDAAKALVTGILEHQDIF 184          
BLAST of mRNA_H-paniculata_contig4006.10388.1 vs. uniprot
Match: A0A1V9YVF5_9STRA (Ras-related protein Rab n=3 Tax=Saprolegniaceae TaxID=4764 RepID=A0A1V9YVF5_9STRA)

HSP 1 Score: 186 bits (472), Expect = 2.510e-56
Identity = 90/162 (55.56%), Postives = 121/162 (74.69%), Query Frame = 0
Query:   13 VIKILVLGDAAVGKTSVIRRYVDNVFSSAHQPTVGVDFFLKEIPIDACRGATVHTVRVQLWDIAGQDRSKKVNRVYYKGALGALIVYDISRPETFDSAEKWKKELDNNVTLPNGEALPVVLLGNKVDLEMAAVDVAYVDRYVKKHGFIAWCDVSAKDASNAE 174
            V+K+LVLGDAA GKTS+I+RYV NVFS  H+ T+GVDF LK + ++        T+RVQLWDIAGQ+  + +NRVYYK ALGAL+VYD+SRP+TF+SA KWKKE+D  V LPN + LPV+L GNK DL  + +D A++D + + +GF  W + SAK+ +N +
Sbjct:   12 VVKVLVLGDAATGKTSIIKRYVHNVFSDQHKTTIGVDFALKPVTVNNT------TLRVQLWDIAGQEHFRALNRVYYKDALGALVVYDMSRPDTFESALKWKKEIDTKVELPNKKPLPVILCGNKCDLA-SDIDRAFLDGFCETNGFAGWFETSAKENTNID 166          
BLAST of mRNA_H-paniculata_contig4006.10388.1 vs. uniprot
Match: A0A836CJ20_9STRA (P-loop containing nucleoside triphosphate hydrolase protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CJ20_9STRA)

HSP 1 Score: 188 bits (478), Expect = 3.870e-56
Identity = 100/186 (53.76%), Postives = 129/186 (69.35%), Query Frame = 0
Query:    3 MASTVDSSPPVIKILVLGDAAVGKTSVIRRYVDNVFSSAHQPTVGVDFFLKEIPIDACRGATVHTVRVQLWDIAGQDRSK--KVNRVYYKGALGALIVYDISRPETFDSAEKWKKELDNNVTLPNGEALPVVLLGNKVDLEMAAVDVAYVDRYVKKHGFIAWCDVSAKDASNAEFKVSVAWLIQNI 186
            MAS+ D+  P +K+LV+GD+A GKTS+I+R+    F    Q TVGVDF LKE+ I          VRVQLWDIAGQDRS    +NRVYY+GA GALIVYDI+RP TFD   KWK +LD  V L +G++LP VL+GNK DLE+A VD  +++RY  + GF+ W D SAKD  + EF+ +V+ LI+ I
Sbjct:    1 MASSSDAPAPTLKLLVIGDSASGKTSLIKRFCLGDFDEDLQATVGVDFTLKEVQILGLN------VRVQLWDIAGQDRSGGGTMNRVYYQGACGALIVYDITRPATFDGVAKWKADLDAKVLLEDGKSLPAVLIGNKKDLEIAIVDGDFMNRYCGESGFVTWKDTSAKDPEDTEFQSAVSVLIEEI 180          
BLAST of mRNA_H-paniculata_contig4006.10388.1 vs. uniprot
Match: A0A7S2APD4_9STRA (Ras-related protein Rab n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2APD4_9STRA)

HSP 1 Score: 186 bits (471), Expect = 5.990e-56
Identity = 92/186 (49.46%), Postives = 124/186 (66.67%), Query Frame = 0
Query:   13 VIKILVLGDAAVGKTSVIRRYVDNVFSSAHQPTVGVDFFLKEIPIDACRGATVHTVRVQLWDIAGQDRSKKVNRVYYKGALGALIVYDISRPETFDSAEKWKKELDNNVTLPNGEALPVVLLGNKVDLEMAAVDVAYVDRYVKKHGFIAWCDVSAKDASNAEFKVSVAWLIQNILCCEELFGPGMR 198
            V+K+LVLGD A GKTS+I+RYV N FS+ H+ TVGVDF LK++ +          VR+QLWDIAGQDR   + RVYYK A GA +VYD+SR  TF++  KWKKE+D  V LPNG  LPVVLL NK D+    +D A ++R+ + HGF+AW + SAK A   +   +  +L++ IL  +++F    R
Sbjct:   27 VLKVLVLGDPATGKTSIIKRYVHNFFSNHHRTTVGVDFALKQLQVYNT------VVRLQLWDIAGQDRFGAIARVYYKDAFGAFLVYDLSRQRTFETVSKWKKEIDAKVVLPNGHPLPVVLLANKCDIAGVELDAAELNRFCEDHGFVAWFETSAKTAHKID--AAARFLVEKILSHQDIFNDKRR 204          
BLAST of mRNA_H-paniculata_contig4006.10388.1 vs. uniprot
Match: W2QJV6_PHYPN (Ras-related protein Rab n=3 Tax=Peronosporaceae TaxID=4777 RepID=W2QJV6_PHYPN)

HSP 1 Score: 184 bits (468), Expect = 1.140e-55
Identity = 95/181 (52.49%), Postives = 124/181 (68.51%), Query Frame = 0
Query:   13 VIKILVLGDAAVGKTSVIRRYVDNVFSSAHQPTVGVDFFLKEIPIDACRGATVHTVRVQLWDIAGQDRSKKVNRVYYKGALGALIVYDISRPETFDSAEKWKKELDNNVTLPNGEALPVVLLGNKVDLEMAAVDVAYVDRYVKKHGFIAWCDVSAKDASNAEFKVSVAWLIQNILCCEELF 193
            VIK+LVLGDAA GKTS+I+RYV + FS  H+ T+GVDF LK + +         TVR+QLWDIAGQ+  + +NRVYYK ALGAL+VYD+SRPETFDS  KWKKE+D+ V LPNG+ LPV+L GNK DL+   VD  ++D +   + F  W D SAK+  N     +   L+  IL  +++F
Sbjct:   13 VIKVLVLGDAATGKTSIIKRYVHDAFSEHHRTTIGVDFALKAVTVSGT------TVRLQLWDIAGQEHFRALNRVYYKDALGALLVYDMSRPETFDSILKWKKEIDSKVELPNGKTLPVILCGNKCDLK-EYVDREFLDEFCNTNNFTGWFDTSAKE--NIHIDDAAKALVTGILQHKDIF 184          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig4006.10388.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FUI0_ECTSI1.960e-9167.17Rab32C, RAB family GTPase n=1 Tax=Ectocarpus silic... [more]
A0A7S2V4T6_9STRA7.640e-6155.43Ras-related protein Rab n=1 Tax=Fibrocapsa japonic... [more]
A0A6V1S8I5_HETAK1.240e-5750.00Ras-related protein Rab n=1 Tax=Heterosigma akashi... [more]
A0A1V9YUT9_9STRA2.400e-5756.79Ras-related protein Rab n=1 Tax=Thraustotheca clav... [more]
A0A7S2S186_9STRA2.710e-5750.54Ras-related protein Rab n=1 Tax=Rhizochromulina ma... [more]
H3HAQ4_PHYRM1.410e-5653.04Ras-related protein Rab n=17 Tax=Peronosporaceae T... [more]
A0A1V9YVF5_9STRA2.510e-5655.56Ras-related protein Rab n=3 Tax=Saprolegniaceae Ta... [more]
A0A836CJ20_9STRA3.870e-5653.76P-loop containing nucleoside triphosphate hydrolas... [more]
A0A7S2APD4_9STRA5.990e-5649.46Ras-related protein Rab n=1 Tax=Dictyocha speculum... [more]
W2QJV6_PHYPN1.140e-5552.49Ras-related protein Rab n=3 Tax=Peronosporaceae Ta... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePRINTSPR00449RASTRNSFRMNGcoord: 14..35
score: 39.37
coord: 127..140
score: 47.97
coord: 61..83
score: 29.36
coord: 37..53
score: 29.44
NoneNo IPR availableSMARTSM00174rho_sub_3coord: 16..185
e-value: 1.5E-6
score: -34.1
NoneNo IPR availableSMARTSM00175rab_sub_5coord: 14..185
e-value: 8.9E-44
score: 161.4
NoneNo IPR availableSMARTSM00173ras_sub_4coord: 11..185
e-value: 4.7E-7
score: -10.5
NoneNo IPR availableGENE3D3.40.50.300coord: 12..187
e-value: 2.8E-46
score: 159.2
NoneNo IPR availablePANTHERPTHR24073:SF839RAS-RELATED PROTEIN RAB-38coord: 11..190
NoneNo IPR availablePANTHERPTHR24073FAMILY NOT NAMEDcoord: 11..190
NoneNo IPR availablePROSITEPS51419RABcoord: 8..198
score: 23.983
IPR005225Small GTP-binding protein domainTIGRFAMTIGR00231TIGR00231coord: 14..174
e-value: 4.6E-21
score: 73.2
IPR001806Small GTPasePFAMPF00071Rascoord: 15..174
e-value: 6.6E-39
score: 133.1
IPR027417P-loop containing nucleoside triphosphate hydrolaseSUPERFAMILY52540P-loop containing nucleoside triphosphate hydrolasescoord: 11..173

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig4006contigH-paniculata_contig4006:726..4070 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig4006.10388.1mRNA_H-paniculata_contig4006.10388.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig4006 663..4070 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig4006.10388.1 ID=prot_H-paniculata_contig4006.10388.1|Name=mRNA_H-paniculata_contig4006.10388.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=198bp
MSMASTVDSSPPVIKILVLGDAAVGKTSVIRRYVDNVFSSAHQPTVGVDF
FLKEIPIDACRGATVHTVRVQLWDIAGQDRSKKVNRVYYKGALGALIVYD
ISRPETFDSAEKWKKELDNNVTLPNGEALPVVLLGNKVDLEMAAVDVAYV
DRYVKKHGFIAWCDVSAKDASNAEFKVSVAWLIQNILCCEELFGPGMR
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR005225Small_GTP-bd_dom
IPR001806Small_GTPase
IPR027417P-loop_NTPase