mRNA_H-paniculata_contig4006.10388.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig4006.10388.1
Unique NamemRNA_H-paniculata_contig4006.10388.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig4006.10388.1 vs. uniprot
Match: D7FUI0_ECTSI (Rab32C, RAB family GTPase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUI0_ECTSI)

HSP 1 Score: 276 bits (707), Expect = 3.120e-91
Identity = 133/198 (67.17%), Postives = 168/198 (84.85%), Query Frame = 1
Query:   70 MASTVDSSPPVIKILVLGDAAVGKTSVIRRYVDNVFSSAHQPTVGVDFFLKEIPIDACRGATVH--TVRVQLWDIAGQDRSKKVNRVYYKGALGALIVYDISRPETFDSAEKWKKELDNNVTLPNGEALPVVLLGNKVDLEMAAVDVAYVDRYVKKHGFIAWCDVSAKDASNAEFKVSVAWLIQNILCCEELFGPGMR 657
            M+S  ++SP VIKILV+GDA VGKTSVI+R+V++ FS  H+PT+GVDFF+KE+ ++  +  +    TVRVQLWDIAGQDR++K+NR Y+KGALGAL+VYDISRP+TFDSA KWK+ELD N+TLPNG +LPVVLLGNKVDLE+A VDV+Y+D +V+ H F+AW DVSAKDA N +F++SVA LIQ +LC EELFGPGMR
Sbjct:    1 MSSAAETSP-VIKILVVGDAGVGKTSVIQRFVNDEFSPTHRPTIGVDFFIKEVALNGDQSESFPGTTVRVQLWDIAGQDRARKMNRAYFKGALGALVVYDISRPQTFDSAAKWKQELDANITLPNGSSLPVVLLGNKVDLEVAKVDVSYIDSFVETHRFVAWSDVSAKDAINGDFEMSVACLIQKLLCDEELFGPGMR 197          
BLAST of mRNA_H-paniculata_contig4006.10388.1 vs. uniprot
Match: A0A7S2V4T6_9STRA (Ras-related protein Rab n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V4T6_9STRA)

HSP 1 Score: 197 bits (501), Expect = 1.640e-60
Identity = 97/175 (55.43%), Postives = 126/175 (72.00%), Query Frame = 1
Query:  100 VIKILVLGDAAVGKTSVIRRYVDNVFSSAHQPTVGVDFFLKEIPIDACRGATVHTVRVQLWDIAGQDRSKKVNRVYYKGALGALIVYDISRPETFDSAEKWKKELDNNVTLPNGEALPVVLLGNKVDLEMAAVDVAYVDRYVKKHGFIAWCDVSAKDASNAEFKVSVAWLIQNIL 624
            V+K+LVLGD A GKTS+I+RYV N FS+ H+ TVGVDF LK++ +   RG  V   R+QLWDIAGQDR   + RVYYK A GA++VYD++RP TF+   KWK+E+D  V+LPNGE +PVVLLGNK DLE A VD  Y+D + K+HGF+ W D SAK  +N     +  +L++ IL
Sbjct:    9 VLKVLVLGDPATGKTSIIKRYVHNFFSTHHKTTVGVDFALKQLHV---RGTDV---RLQLWDIAGQDRFGAIARVYYKDAFGAMLVYDVTRPPTFEMVSKWKEEIDTKVSLPNGEPIPVVLLGNKSDLEKAKVDTEYLDEFCKQHGFVGWFDTSAK--TNQNIVEAATFLVEKIL 175          
BLAST of mRNA_H-paniculata_contig4006.10388.1 vs. uniprot
Match: A0A6V1S8I5_HETAK (Ras-related protein Rab n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1S8I5_HETAK)

HSP 1 Score: 189 bits (480), Expect = 2.640e-57
Identity = 92/184 (50.00%), Postives = 125/184 (67.93%), Query Frame = 1
Query:  106 KILVLGDAAVGKTSVIRRYVDNVFSSAHQPTVGVDFFLKEIPIDACRGATVHTVRVQLWDIAGQDRSKKVNRVYYKGALGALIVYDISRPETFDSAEKWKKELDNNVTLPNGEALPVVLLGNKVDLEMAAVDVAYVDRYVKKHGFIAWCDVSAKDASNAEFKVSVAWLIQNILCCEELFGPGMR 657
            K+LVLGD A GKTS+I+RYV N FS  H+ TVGVDF LK + ++         V++QLWDIAGQDR   + R YYK + GALIVYD SRP TFD+ EKWK+E+D+ V LP+G  +P+VLL NK DL+ A VD +Y+D++ ++HGFI W D SA+   N   + +  +L+ N+L   +L  P  +
Sbjct:   11 KVLVLGDPATGKTSIIKRYVHNFFSDHHKTTVGVDFALKALNVNGTE------VKMQLWDIAGQDRFGVIARTYYKDSYGALIVYDASRPPTFDTVEKWKREIDDKVKLPDGSNIPIVLLANKCDLDKAEVDKSYLDQFCQEHGFIGWFDTSAR--LNINIEQACRFLVDNLLEKRDLLNPPAK 186          
BLAST of mRNA_H-paniculata_contig4006.10388.1 vs. uniprot
Match: A0A1V9YUT9_9STRA (Ras-related protein Rab n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9YUT9_9STRA)

HSP 1 Score: 189 bits (479), Expect = 5.110e-57
Identity = 92/162 (56.79%), Postives = 119/162 (73.46%), Query Frame = 1
Query:  100 VIKILVLGDAAVGKTSVIRRYVDNVFSSAHQPTVGVDFFLKEIPIDACRGATVHTVRVQLWDIAGQDRSKKVNRVYYKGALGALIVYDISRPETFDSAEKWKKELDNNVTLPNGEALPVVLLGNKVDLEMAAVDVAYVDRYVKKHGFIAWCDVSAKDASNAE 585
            V+K+LVLGDAA GKTS+I+RYV NVFS  H+ T+GVDF LK + ++        T+RVQLWDIAGQ+  + +NRVYYK ALGAL+VYD+SRP+TF+SA KWKKE+D  V LPN + LPV+L GNK DL    VD A++D + + +GF  W D SAK+  N +
Sbjct:   14 VVKVLVLGDAATGKTSIIKRYVHNVFSDHHKTTIGVDFALKPVTVNGT------TLRVQLWDIAGQEHFRALNRVYYKDALGALVVYDMSRPDTFESAIKWKKEIDTKVELPNKKPLPVILCGNKCDLA-GEVDRAFLDEFCETNGFAGWFDTSAKENKNID 168          
BLAST of mRNA_H-paniculata_contig4006.10388.1 vs. uniprot
Match: A0A7S2S186_9STRA (Ras-related protein Rab n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2S186_9STRA)

HSP 1 Score: 189 bits (479), Expect = 5.780e-57
Identity = 94/186 (50.54%), Postives = 129/186 (69.35%), Query Frame = 1
Query:  100 VIKILVLGDAAVGKTSVIRRYVDNVFSSAHQPTVGVDFFLKEIPIDACRGATVHTVRVQLWDIAGQDRSKKVNRVYYKGALGALIVYDISRPETFDSAEKWKKELDNNVTLPNGEALPVVLLGNKVDLEMAAVDVAYVDRYVKKHGFIAWCDVSAKDASNAEFKVSVAWLIQNILCCEELFGPGMR 657
            V+K+LVLGD A GKTS+I+RYV N FS+ H+ TVGVDF LK++ +          VR+QLWDIAGQDR   ++RVYYK ALGA +VYD++RP TFD+  KWK E+D  V LPN E LPVVLL NK D+E   +D   +D++ ++HGFIAW + SAK  ++ +   +  +L++NIL  E++F    +
Sbjct:    8 VLKVLVLGDPATGKTSIIKRYVHNFFSNHHRTTVGVDFALKQLTVRN------QLVRLQLWDIAGQDRFGAISRVYYKDALGAFLVYDLARPATFDTVVKWKGEIDAKVVLPNHEPLPVVLLANKCDIEGVKIDSDALDKFCEEHGFIAWFETSAK--TDHKIDAAARFLLENILEHEDIFAEKAK 185          
BLAST of mRNA_H-paniculata_contig4006.10388.1 vs. uniprot
Match: H3HAQ4_PHYRM (Ras-related protein Rab n=17 Tax=Peronosporaceae TaxID=4777 RepID=H3HAQ4_PHYRM)

HSP 1 Score: 187 bits (474), Expect = 3.010e-56
Identity = 96/181 (53.04%), Postives = 126/181 (69.61%), Query Frame = 1
Query:  100 VIKILVLGDAAVGKTSVIRRYVDNVFSSAHQPTVGVDFFLKEIPIDACRGATVHTVRVQLWDIAGQDRSKKVNRVYYKGALGALIVYDISRPETFDSAEKWKKELDNNVTLPNGEALPVVLLGNKVDLEMAAVDVAYVDRYVKKHGFIAWCDVSAKDASNAEFKVSVAWLIQNILCCEELF 642
            VIK+LVLGDAA GKTS+I+RYV + FS  H+ T+GVDF LK + ++        TVR+QLWDIAGQ+  + +NRVYYK ALGAL+VYD+SRPETFDS  KWKKE+D+ V LPNG+ LPV+L GNK DL+   VD  ++D + K + F  W D SAK+  N     +   L+  IL  +++F
Sbjct:   13 VIKVLVLGDAATGKTSIIKRYVHDAFSEHHRTTIGVDFALKAVTVNGT------TVRLQLWDIAGQEHFRALNRVYYKDALGALLVYDMSRPETFDSVLKWKKEIDSKVELPNGKPLPVILCGNKCDLK-EDVDREFLDEFCKTNNFTGWFDTSAKE--NIHIDDAAKALVTGILEHQDIF 184          
BLAST of mRNA_H-paniculata_contig4006.10388.1 vs. uniprot
Match: A0A1V9YVF5_9STRA (Ras-related protein Rab n=3 Tax=Saprolegniaceae TaxID=4764 RepID=A0A1V9YVF5_9STRA)

HSP 1 Score: 186 bits (472), Expect = 5.330e-56
Identity = 90/162 (55.56%), Postives = 121/162 (74.69%), Query Frame = 1
Query:  100 VIKILVLGDAAVGKTSVIRRYVDNVFSSAHQPTVGVDFFLKEIPIDACRGATVHTVRVQLWDIAGQDRSKKVNRVYYKGALGALIVYDISRPETFDSAEKWKKELDNNVTLPNGEALPVVLLGNKVDLEMAAVDVAYVDRYVKKHGFIAWCDVSAKDASNAE 585
            V+K+LVLGDAA GKTS+I+RYV NVFS  H+ T+GVDF LK + ++        T+RVQLWDIAGQ+  + +NRVYYK ALGAL+VYD+SRP+TF+SA KWKKE+D  V LPN + LPV+L GNK DL  + +D A++D + + +GF  W + SAK+ +N +
Sbjct:   12 VVKVLVLGDAATGKTSIIKRYVHNVFSDQHKTTIGVDFALKPVTVNNT------TLRVQLWDIAGQEHFRALNRVYYKDALGALVVYDMSRPDTFESALKWKKEIDTKVELPNKKPLPVILCGNKCDLA-SDIDRAFLDGFCETNGFAGWFETSAKENTNID 166          
BLAST of mRNA_H-paniculata_contig4006.10388.1 vs. uniprot
Match: A0A836CJ20_9STRA (P-loop containing nucleoside triphosphate hydrolase protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CJ20_9STRA)

HSP 1 Score: 189 bits (479), Expect = 5.830e-56
Identity = 100/186 (53.76%), Postives = 129/186 (69.35%), Query Frame = 1
Query:   70 MASTVDSSPPVIKILVLGDAAVGKTSVIRRYVDNVFSSAHQPTVGVDFFLKEIPIDACRGATVHTVRVQLWDIAGQDRSK--KVNRVYYKGALGALIVYDISRPETFDSAEKWKKELDNNVTLPNGEALPVVLLGNKVDLEMAAVDVAYVDRYVKKHGFIAWCDVSAKDASNAEFKVSVAWLIQNI 621
            MAS+ D+  P +K+LV+GD+A GKTS+I+R+    F    Q TVGVDF LKE+ I          VRVQLWDIAGQDRS    +NRVYY+GA GALIVYDI+RP TFD   KWK +LD  V L +G++LP VL+GNK DLE+A VD  +++RY  + GF+ W D SAKD  + EF+ +V+ LI+ I
Sbjct:    1 MASSSDAPAPTLKLLVIGDSASGKTSLIKRFCLGDFDEDLQATVGVDFTLKEVQILGLN------VRVQLWDIAGQDRSGGGTMNRVYYQGACGALIVYDITRPATFDGVAKWKADLDAKVLLEDGKSLPAVLIGNKKDLEIAIVDGDFMNRYCGESGFVTWKDTSAKDPEDTEFQSAVSVLIEEI 180          
BLAST of mRNA_H-paniculata_contig4006.10388.1 vs. uniprot
Match: A0A7S2APD4_9STRA (Ras-related protein Rab n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2APD4_9STRA)

HSP 1 Score: 186 bits (471), Expect = 1.270e-55
Identity = 92/186 (49.46%), Postives = 124/186 (66.67%), Query Frame = 1
Query:  100 VIKILVLGDAAVGKTSVIRRYVDNVFSSAHQPTVGVDFFLKEIPIDACRGATVHTVRVQLWDIAGQDRSKKVNRVYYKGALGALIVYDISRPETFDSAEKWKKELDNNVTLPNGEALPVVLLGNKVDLEMAAVDVAYVDRYVKKHGFIAWCDVSAKDASNAEFKVSVAWLIQNILCCEELFGPGMR 657
            V+K+LVLGD A GKTS+I+RYV N FS+ H+ TVGVDF LK++ +          VR+QLWDIAGQDR   + RVYYK A GA +VYD+SR  TF++  KWKKE+D  V LPNG  LPVVLL NK D+    +D A ++R+ + HGF+AW + SAK A   +   +  +L++ IL  +++F    R
Sbjct:   27 VLKVLVLGDPATGKTSIIKRYVHNFFSNHHRTTVGVDFALKQLQVYNT------VVRLQLWDIAGQDRFGAIARVYYKDAFGAFLVYDLSRQRTFETVSKWKKEIDAKVVLPNGHPLPVVLLANKCDIAGVELDAAELNRFCEDHGFVAWFETSAKTAHKID--AAARFLVEKILSHQDIFNDKRR 204          
BLAST of mRNA_H-paniculata_contig4006.10388.1 vs. uniprot
Match: W2QJV6_PHYPN (Ras-related protein Rab n=3 Tax=Peronosporaceae TaxID=4777 RepID=W2QJV6_PHYPN)

HSP 1 Score: 184 bits (468), Expect = 2.430e-55
Identity = 95/181 (52.49%), Postives = 124/181 (68.51%), Query Frame = 1
Query:  100 VIKILVLGDAAVGKTSVIRRYVDNVFSSAHQPTVGVDFFLKEIPIDACRGATVHTVRVQLWDIAGQDRSKKVNRVYYKGALGALIVYDISRPETFDSAEKWKKELDNNVTLPNGEALPVVLLGNKVDLEMAAVDVAYVDRYVKKHGFIAWCDVSAKDASNAEFKVSVAWLIQNILCCEELF 642
            VIK+LVLGDAA GKTS+I+RYV + FS  H+ T+GVDF LK + +         TVR+QLWDIAGQ+  + +NRVYYK ALGAL+VYD+SRPETFDS  KWKKE+D+ V LPNG+ LPV+L GNK DL+   VD  ++D +   + F  W D SAK+  N     +   L+  IL  +++F
Sbjct:   13 VIKVLVLGDAATGKTSIIKRYVHDAFSEHHRTTIGVDFALKAVTVSGT------TVRLQLWDIAGQEHFRALNRVYYKDALGALLVYDMSRPETFDSILKWKKEIDSKVELPNGKTLPVILCGNKCDLK-EYVDREFLDEFCNTNNFTGWFDTSAKE--NIHIDDAAKALVTGILQHKDIF 184          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig4006.10388.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FUI0_ECTSI3.120e-9167.17Rab32C, RAB family GTPase n=1 Tax=Ectocarpus silic... [more]
A0A7S2V4T6_9STRA1.640e-6055.43Ras-related protein Rab n=1 Tax=Fibrocapsa japonic... [more]
A0A6V1S8I5_HETAK2.640e-5750.00Ras-related protein Rab n=1 Tax=Heterosigma akashi... [more]
A0A1V9YUT9_9STRA5.110e-5756.79Ras-related protein Rab n=1 Tax=Thraustotheca clav... [more]
A0A7S2S186_9STRA5.780e-5750.54Ras-related protein Rab n=1 Tax=Rhizochromulina ma... [more]
H3HAQ4_PHYRM3.010e-5653.04Ras-related protein Rab n=17 Tax=Peronosporaceae T... [more]
A0A1V9YVF5_9STRA5.330e-5655.56Ras-related protein Rab n=3 Tax=Saprolegniaceae Ta... [more]
A0A836CJ20_9STRA5.830e-5653.76P-loop containing nucleoside triphosphate hydrolas... [more]
A0A7S2APD4_9STRA1.270e-5549.46Ras-related protein Rab n=1 Tax=Dictyocha speculum... [more]
W2QJV6_PHYPN2.430e-5552.49Ras-related protein Rab n=3 Tax=Peronosporaceae Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig4006contigH-paniculata_contig4006:663..4070 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score276.2
Seed ortholog evalue1.2e-71
Seed eggNOG ortholog2880.D7FUI0
Preferred nameRAB32
KEGG koko:K07918,ko:K07923,ko:K07976
Hectar predicted targeting categoryother localisation
GOsGO:0000166,GO:0000323,GO:0001882,GO:0001883,GO:0002376,GO:0003674,GO:0003824,GO:0003924,GO:0005488,GO:0005515,GO:0005525,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0005741,GO:0005764,GO:0005768,GO:0005769,GO:0005773,GO:0005776,GO:0005783,GO:0005794,GO:0005802,GO:0005829,GO:0006464,GO:0006725,GO:0006726,GO:0006727,GO:0006807,GO:0006810,GO:0006856,GO:0006873,GO:0006885,GO:0006996,GO:0007005,GO:0007033,GO:0007040,GO:0007154,GO:0007165,GO:0007264,GO:0007265,GO:0008055,GO:0008057,GO:0008104,GO:0008150,GO:0008152,GO:0009058,GO:0009605,GO:0009894,GO:0009987,GO:0010256,GO:0010506,GO:0010876,GO:0010883,GO:0010941,GO:0012505,GO:0012506,GO:0015031,GO:0015833,GO:0016020,GO:0016043,GO:0016050,GO:0016192,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0017076,GO:0017111,GO:0018130,GO:0019001,GO:0019222,GO:0019438,GO:0019538,GO:0019725,GO:0019748,GO:0019867,GO:0019882,GO:0019915,GO:0021700,GO:0022607,GO:0023052,GO:0030003,GO:0030004,GO:0030139,GO:0030154,GO:0030641,GO:0030659,GO:0030742,GO:0031090,GO:0031323,GO:0031329,GO:0031410,GO:0031966,GO:0031967,GO:0031968,GO:0031975,GO:0031982,GO:0031984,GO:0032438,GO:0032482,GO:0032502,GO:0032549,GO:0032550,GO:0032553,GO:0032555,GO:0032561,GO:0032879,GO:0033036,GO:0033059,GO:0033060,GO:0033162,GO:0033363,GO:0034613,GO:0035556,GO:0035639,GO:0035646,GO:0035650,GO:0035651,GO:0036094,GO:0036211,GO:0036461,GO:0042440,GO:0042441,GO:0042470,GO:0042592,GO:0042886,GO:0043167,GO:0043168,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043324,GO:0043412,GO:0043473,GO:0043474,GO:0043476,GO:0043482,GO:0043485,GO:0043687,GO:0044085,GO:0044232,GO:0044233,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044429,GO:0044431,GO:0044433,GO:0044444,GO:0044446,GO:0044464,GO:0044550,GO:0044840,GO:0044841,GO:0044877,GO:0045009,GO:0045184,GO:0045335,GO:0045851,GO:0046148,GO:0046152,GO:0046158,GO:0046483,GO:0046907,GO:0048066,GO:0048069,GO:0048072,GO:0048753,GO:0048757,GO:0048770,GO:0048869,GO:0048878,GO:0050789,GO:0050794,GO:0050801,GO:0050896,GO:0050931,GO:0051179,GO:0051234,GO:0051235,GO:0051452,GO:0051453,GO:0051641,GO:0051649,GO:0051716,GO:0055067,GO:0055080,GO:0055082,GO:0060155,GO:0065007,GO:0065008,GO:0070727,GO:0070925,GO:0071702,GO:0071704,GO:0071705,GO:0071840,GO:0072657,GO:0080171,GO:0090382,GO:0090383,GO:0090741,GO:0097159,GO:0097367,GO:0097708,GO:0098588,GO:0098771,GO:0098791,GO:0098805,GO:1901214,GO:1901265,GO:1901360,GO:1901362,GO:1901363,GO:1901564,GO:1901576,GO:1903232,GO:1905952
EggNOG free text desc.BLOC-2 complex binding
EggNOG OGsKOG4423@1,KOG4423@2759
Ec32 ortholog descriptionRab32C, RAB family GTPase
Ec32 orthologEc-21_003790.1
COG Functional cat.E
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04031,ko04131
Exons6
Model size657
Cds size594
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930227.8120186-UTR-H-paniculata_contig4006:662..7251622930227.8120186-UTR-H-paniculata_contig4006:662..725Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4006 663..725 +
1691481200.0074623-UTR-H-paniculata_contig4006:662..7251691481200.0074623-UTR-H-paniculata_contig4006:662..725Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4006 663..725 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930227.8341317-CDS-H-paniculata_contig4006:725..8201622930227.8341317-CDS-H-paniculata_contig4006:725..820Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4006 726..820 +
1691481200.0224621-CDS-H-paniculata_contig4006:725..8201691481200.0224621-CDS-H-paniculata_contig4006:725..820Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4006 726..820 +
1622930227.8542252-CDS-H-paniculata_contig4006:1107..12701622930227.8542252-CDS-H-paniculata_contig4006:1107..1270Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4006 1108..1270 +
1691481200.0312164-CDS-H-paniculata_contig4006:1107..12701691481200.0312164-CDS-H-paniculata_contig4006:1107..1270Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4006 1108..1270 +
1622930227.8709595-CDS-H-paniculata_contig4006:1639..17171622930227.8709595-CDS-H-paniculata_contig4006:1639..1717Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4006 1640..1717 +
1691481200.0469594-CDS-H-paniculata_contig4006:1639..17171691481200.0469594-CDS-H-paniculata_contig4006:1639..1717Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4006 1640..1717 +
1622930227.9015675-CDS-H-paniculata_contig4006:2284..23591622930227.9015675-CDS-H-paniculata_contig4006:2284..2359Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4006 2285..2359 +
1691481200.0603023-CDS-H-paniculata_contig4006:2284..23591691481200.0603023-CDS-H-paniculata_contig4006:2284..2359Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4006 2285..2359 +
1622930227.918327-CDS-H-paniculata_contig4006:2865..29391622930227.918327-CDS-H-paniculata_contig4006:2865..2939Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4006 2866..2939 +
1691481200.0688393-CDS-H-paniculata_contig4006:2865..29391691481200.0688393-CDS-H-paniculata_contig4006:2865..2939Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4006 2866..2939 +
1622930227.9389951-CDS-H-paniculata_contig4006:3961..40701622930227.9389951-CDS-H-paniculata_contig4006:3961..4070Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4006 3962..4070 +
1691481200.0772064-CDS-H-paniculata_contig4006:3961..40701691481200.0772064-CDS-H-paniculata_contig4006:3961..4070Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4006 3962..4070 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig4006.10388.1prot_H-paniculata_contig4006.10388.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig4006 726..4070 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig4006.10388.1

>prot_H-paniculata_contig4006.10388.1 ID=prot_H-paniculata_contig4006.10388.1|Name=mRNA_H-paniculata_contig4006.10388.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=198bp
MSMASTVDSSPPVIKILVLGDAAVGKTSVIRRYVDNVFSSAHQPTVGVDF
FLKEIPIDACRGATVHTVRVQLWDIAGQDRSKKVNRVYYKGALGALIVYD
ISRPETFDSAEKWKKELDNNVTLPNGEALPVVLLGNKVDLEMAAVDVAYV
DRYVKKHGFIAWCDVSAKDASNAEFKVSVAWLIQNILCCEELFGPGMR
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mRNA from alignment at H-paniculata_contig4006:663..4070+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig4006.10388.1 ID=mRNA_H-paniculata_contig4006.10388.1|Name=mRNA_H-paniculata_contig4006.10388.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=3408bp|location=Sequence derived from alignment at H-paniculata_contig4006:663..4070+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GAGGGGCCAACTTCGCACACTGGTTTGTGTGTTTGAGGGAAAGCCATCCT CGATGTTTCGAAGATGTCGATGGCATCAACCGTGGATAGCAGTCCGCCGG TGATTAAGATTCTTGTCTTGGGAGATGCCGCTGTCGGGAAAACGTCCGTC ATACGTAGGTAATTCGGGTAGCACCGATGAGTACACAACTCCTGCCTCGT GCAGGTCTACCAAAATTAATCTACTTCAAGGCAATACTAGAGCCACCGTG AAACACCTTCAGTTTATTATATTTACAATCCAAGCCAGAATATGTAAGAC TAATTCGTGTTAAATGTTCCTTTTTTTAGGCACTGGGATTACGATCAGAA CAGTGGAGCTGGAAGCCTGCTGCAGCAGAACAAGCACTCATCAGAGCACG AATGCATTAATACCTTTGGCTTACCGGGCGCATTTGTTTGGTCAGATACG TCGACAACGTTTTCTCTTCAGCACATCAACCAACTGTGGGGGTGGACTTT TTCCTCAAGGAGATACCAATTGATGCATGCCGCGGGGCAACGGTGCATAC TGTGCGTGTGCAGTTGTGGGACATAGCGGGACAGGACAGGTCAAAGAAAG TCAACAGGGTGAGAACATGTGAATACAAGCATCGTTTCTGTGGTCACTCT ACTGTTCAACGTAATAAACCGCACAGTATGTCGTGTAGTGAGCGACTCAC CCCCGGTATTTTCGGCGTCTTCTAACTATAACAGCGCGGCGGCGGTGGTG TAAATAGTTGTGATATTTTAATGAGTACCGCAGTTGCGCGTTGGCTGGTT GGATTCGCCGCACAAGTAGAGTTAAATCTGGCCTGACGATACTGAAATAG CGGTGGTGGCCTATACAGCACCTATTGACGGTGGTACACTGGCAATTCTG AAATGCGAGACTTTTTCACACTGATGCCAAGTATCGCCCTCCGTTGGTGC AATATCGTTCTCATAAACAACACTCAGGTTTACTACAAGGGGGCGCTTGG AGCGCTTATCGTGTACGACATCTCTCGGCCCGAGACCTTCGATTCGGCCG AGAAGGTCATCGACACATCTAATGCAGGATGATAATCACCACAAATTTCT GGTCTTGCAAGGCAGTAGTTAGGCAGAAAATGCGTGGGGGTCAACAAAAC AAATCATAACCTCGGGCAGGCCTAATTCGGTTTATAAGTCGCTTCGGGAA TATGGGTGCGGGTGTGTTTCAAGGTGCGACGTCGGCCTGTACGCTATTGA TGACTCTTATCAGAACTTTGCTAAATTGTAGCAGAAACCACCGGAGTGCA AGACCCGATTTATCAGTGTTTCCAATATATATCAAATCAATCAGATCTCC AGCGGCACTACGTTGTATCAGGGCTCATGGCTTCTTGTGGCAATCAGCTT TCGGGGGAAACCGACACGTCATGAGCTGTAGGTCAATATCGATATCCTAC TGCATCTTCCTGGAGTCAACAAGCGCAATCAGCATCATCGTGAGCCGTTG GTCAGCTGGTGCGTTTGTTCAGAACACGCATTGTGTAGTTGATCATTTGG GATTTTTTACCCTACTACCCCCCCTGTCCATGCTCATAACGTCGTTGCTC TTGCGCTTTTTGCTTGCTGCAGTGGAAAAAAGAGCTGGACAACAACGTGA CACTGCCAAATGGAGAGGCACTCCCAGTCGTCCTCCTAGGGAACAAGGTG GGAAAATATCCCAACTTAAGGCACTAATACCTTGCCAGTACCGGTGCTAC TGCTTTCCGGAAATTGTGCAGCAACAGGAAGCTCTCGCCTGGGAGCGCGT AGGTGCAGTCCATATCACAGAAAACACAGATAAGTCCAGAGGATCGCATC AGACACAACACTATCCTCCATCCTGTCGCGATCACAGAAGATTGCAAACG AGGAAGAACCCAGACTGCAAAAACATAAGGGGAGATGATTCTTCACAAGG AAGGTTGCAGCCCCCCTACGCGATTGAATGAGTGAACTATTGCAAAGAGC TAAAGTGCCACTGGTATGTCGTGGCGCGAAGCTCGATCGATCGGTTCAAA AATCACACGGGTTGATAACAAACTTACCTCCTTACCTATCAACGACCTAT CCTCACAGTCTGAAGCACTCGAAACACGTCGTGAAACATGGGCCAGCAAG ACAACACCCCATCCTTACTGCTGCACGCGCATGCAATCCTGAACGAAATG CAGGTTGACTTGGAGATGGCGGCCGTTGATGTGGCCTATGTCGATCGCTA CGTGAAAAAGCACGGCTTTATTGCTTGGTGAGAGATATGCAACTGAATCT GCCACCAGTGCCAATATTATGCCGTCCATGAGGAGCTGACGAGCCATTCA CATAATCTCAGAAGCTGTTTTTATGCATATTTCGAAGACGCTCAGACAAC CTGACAGTTTTGATCTCGCACTACCTCCTGTCGTGGAGCCGCTAACTATA GTGGACGTATCTACGATATGGTCACTTCGCCACTTGGCGCGAGTGCCTTT GTGCTCACACCAGACGCGTTGTAATTTAGAAAATATCATAGTTAAGACAT GAACTTCGGCCGGCGAATCTGTGCTCAGTCATAATCGAATTTTGCAGATT TGTGTCTCAATTTTGAGCATGTTCGAAAAGAGAGTATTGCCCGCCTGGAT AAAGAAGAATGTTTTCCACACGTTTATGCGCGGCATCACCCCCCCTTGAT CAGTCTCTTTGAGGAGAAGCTGGACGTTCCCCGTGTCGCCCCAGGTAGCA GCGGAATGTTTTCCTTTGTTTTTTATCATGAGTTGTTCTTTTTCATCGAG AGGTATTTTGCCATCGGTATGTGTGGATGGTCACCTTAACACTATGATAG ATTCATGATCAGGCTCTTGAACGTATATGCGGCCCGGGTAGATGCGGGTG AAACGGTCGACCGGCGCCGTCGTTGTGAACAGAAGCTACTGCTCGACTAA TCGACAAGGGTGGCACCTTTTACAGCTGACTGTCACCGAGGGATTTCTTA GAAAACTAGTCTCACGTCATTTCTCGCTCTTCGCATACCCCGAAATTTGC GATTCAAATGCACATCCTCAAGCGTTTGGCAAAGTTGGCCTCTTGGCAGC GTACCGTCGATTTGGAATATGTTCAGCTCCTTCGAACTGGCAGTATTCTT GAGATTGCCCAATTTTTCACATTTCCTAGAGGTACCTGCTGATACAAAGG CACTATTGTTGATCTGATATGCTGAGCCTTAGCGAACTAACTGCCATACC TAACAACATTATCCATTGCTTGGATTGTGCCCTTTTTGCGTTAATTAAGG TGCGATGTATCGGCGAAGGACGCAAGCAATGCCGAATTCAAGGTATCTGT GGCGTGGCTTATCCAGAATATTCTCTGCTGCGAGGAGCTTTTCGGACCTG GAATGAGG
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Coding sequence (CDS) from alignment at H-paniculata_contig4006:663..4070+

>mRNA_H-paniculata_contig4006.10388.1 ID=mRNA_H-paniculata_contig4006.10388.1|Name=mRNA_H-paniculata_contig4006.10388.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1188bp|location=Sequence derived from alignment at H-paniculata_contig4006:663..4070+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTCGATGGCATCAACCGTGGATAGCAGTCCGCCGGTGATTAAGATTCT
TGTCTTGGGAGATGCCGCTGTCGGGAAAACGTCCGTCATACGTAGATGTC
GATGGCATCAACCGTGGATAGCAGTCCGCCGGTGATTAAGATTCTTGTCT
TGGGAGATGCCGCTGTCGGGAAAACGTCCGTCATACGTAGATACGTCGAC
AACGTTTTCTCTTCAGCACATCAACCAACTGTGGGGGTGGACTTTTTCCT
CAAGGAGATACCAATTGATGCATGCCGCGGGGCAACGGTGCATACTGTGC
GTGTGCAGTTGTGGGACATAGCGGGACAGGACAGGTCAAAGAAAGTCAAC
AGGATACGTCGACAACGTTTTCTCTTCAGCACATCAACCAACTGTGGGGG
TGGACTTTTTCCTCAAGGAGATACCAATTGATGCATGCCGCGGGGCAACG
GTGCATACTGTGCGTGTGCAGTTGTGGGACATAGCGGGACAGGACAGGTC
AAAGAAAGTCAACAGGGTTTACTACAAGGGGGCGCTTGGAGCGCTTATCG
TGTACGACATCTCTCGGCCCGAGACCTTCGATTCGGCCGAGAAGGTTTAC
TACAAGGGGGCGCTTGGAGCGCTTATCGTGTACGACATCTCTCGGCCCGA
GACCTTCGATTCGGCCGAGAAGTGGAAAAAAGAGCTGGACAACAACGTGA
CACTGCCAAATGGAGAGGCACTCCCAGTCGTCCTCCTAGGGAACAAGTGG
AAAAAAGAGCTGGACAACAACGTGACACTGCCAAATGGAGAGGCACTCCC
AGTCGTCCTCCTAGGGAACAAGGTTGACTTGGAGATGGCGGCCGTTGATG
TGGCCTATGTCGATCGCTACGTGAAAAAGCACGGCTTTATTGCTTGGTTG
ACTTGGAGATGGCGGCCGTTGATGTGGCCTATGTCGATCGCTACGTGAAA
AAGCACGGCTTTATTGCTTGGTGCGATGTATCGGCGAAGGACGCAAGCAA
TGCCGAATTCAAGGTATCTGTGGCGTGGCTTATCCAGAATATTCTCTGCT
GCGAGGAGCTTTTCGGACCTGGAATGAGGGTGCGATGTATCGGCGAAGGA
CGCAAGCAATGCCGAATTCAAGGTATCTGTGGCGTGGCTTATCCAGAATA
TTCTCTGCTGCGAGGAGCTTTTCGGACCTGGAATGAGG
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