prot_H-paniculata_contig39999.10358.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig39999.10358.1
Unique Nameprot_H-paniculata_contig39999.10358.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length106
Homology
BLAST of mRNA_H-paniculata_contig39999.10358.1 vs. uniprot
Match: UPI001CA468C4 (hypothetical protein n=1 Tax=Xylella fastidiosa TaxID=2371 RepID=UPI001CA468C4)

HSP 1 Score: 92.0 bits (227), Expect = 9.610e-22
Identity = 45/104 (43.27%), Postives = 72/104 (69.23%), Query Frame = 0
Query:    3 GRKAIRTKWIFKRKLKEDGSVARYKARLVSQGVSQVEGEDFFETNAPVACMSTLRTVFSLAAEYDFELDGMDVDAAYLNAPVEEEPFDKLPPEFPLSPKTYHLC 106
            G KAI  KWIFK+K+K DG++ ++KARLV++G +Q EG D+F+T APVA +ST+R + ++A+ +   +  MDV  A+LN  ++EE + K P  F +  + + +C
Sbjct:   14 GSKAIGCKWIFKKKMKVDGTIDKFKARLVAKGFTQKEGIDYFDTYAPVARISTIRVLLAIASIHKLHIHQMDVKTAFLNGELDEEIYMKQPEGFVVQGQEHKVC 117          
BLAST of mRNA_H-paniculata_contig39999.10358.1 vs. uniprot
Match: A0A5E8C1W8_9ASCO (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Saprochaete ingens TaxID=2606893 RepID=A0A5E8C1W8_9ASCO)

HSP 1 Score: 95.1 bits (235), Expect = 1.920e-21
Identity = 49/104 (47.12%), Postives = 70/104 (67.31%), Query Frame = 0
Query:    3 GRKAIRTKWIFKRKLKEDGSVARYKARLVSQGVSQVEGEDFFETNAPVACMSTLRTVFSLAAEYDFELDGMDVDAAYLNAPVEEEPFDKLPPEFPLSPKTYHLC 106
            GRKAI +KW+FK K K DGS+ RYKARLV  G SQVEG D+ ET APV    T+R V ++AA++ F++  MDV+ A+LN  ++E+ + + P  F +  +   +C
Sbjct:  107 GRKAINSKWVFKVKRKADGSIERYKARLVCIGFSQVEGIDYTETFAPVVRYETVRIVLAIAAQFGFQVHHMDVETAFLNGDLKEDIYMRQPKGFVVKGQESKVC 210          
BLAST of mRNA_H-paniculata_contig39999.10358.1 vs. uniprot
Match: Q8LSK0_MAIZE (Gag and Pol n=2 Tax=Zea mays TaxID=4577 RepID=Q8LSK0_MAIZE)

HSP 1 Score: 96.7 bits (239), Expect = 4.150e-21
Identity = 48/104 (46.15%), Postives = 71/104 (68.27%), Query Frame = 0
Query:    3 GRKAIRTKWIFKRKLKEDGSVARYKARLVSQGVSQVEGEDFFETNAPVACMSTLRTVFSLAAEYDFELDGMDVDAAYLNAPVEEEPFDKLPPEFPLSPKTYHLC 106
            G K +  KW+FK+KLK DG++ +YKARLV++G +Q EGEDFF+T +PVA M+T+R + SLAA Y   +  MDV  A+LN  ++EE + + P  F +  +   +C
Sbjct:  793 GCKPVGCKWVFKKKLKPDGTIEKYKARLVAKGYTQKEGEDFFDTYSPVARMTTIRVLLSLAASYGLLVHQMDVKTAFLNGELDEEIYMEQPDGFVVKGQESKVC 896          
BLAST of mRNA_H-paniculata_contig39999.10358.1 vs. uniprot
Match: A0A2K3K9W4_TRIPR (Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment) n=1 Tax=Trifolium pratense TaxID=57577 RepID=A0A2K3K9W4_TRIPR)

HSP 1 Score: 91.3 bits (225), Expect = 4.190e-21
Identity = 45/94 (47.87%), Postives = 68/94 (72.34%), Query Frame = 0
Query:    3 GRKAIRTKWIFKRKLKEDGSVARYKARLVSQGVSQVEGEDFFETNAPVACMSTLRTVFSLAAEYDFELDGMDVDAAYLNAPVEEEPFDKLPPEF 96
            G+K I  +W+FK K K DGS+ RYKARLV++G +Q+EG D+F+T APVA + T+R + S+AA  ++ L  +DV+ A+L+  + E+ F +LPP F
Sbjct:   39 GKKPIGCRWVFKIKRKSDGSIERYKARLVAKGYTQIEGVDYFDTFAPVAKLVTVRVLLSIAAAKNWPLHQLDVNNAFLHGDLHEDVFMQLPPGF 132          
BLAST of mRNA_H-paniculata_contig39999.10358.1 vs. uniprot
Match: A0A4Y1R7U6_PRUDU (Transposable element protein n=1 Tax=Prunus dulcis TaxID=3755 RepID=A0A4Y1R7U6_PRUDU)

HSP 1 Score: 92.4 bits (228), Expect = 5.860e-21
Identity = 44/105 (41.90%), Postives = 75/105 (71.43%), Query Frame = 0
Query:    2 AGRKAIRTKWIFKRKLKEDGSVARYKARLVSQGVSQVEGEDFFETNAPVACMSTLRTVFSLAAEYDFELDGMDVDAAYLNAPVEEEPFDKLPPEFPLSPKTYHLC 106
            AG KAI  KW+F++KLK DGS+ +YKARLV++G +Q +G D+F+T +PV+ ++T+RT+ +LA+ ++  +  MDV  A+LN  ++EE + + P  F +  + + +C
Sbjct:   32 AGNKAIGCKWVFRKKLKPDGSIDKYKARLVAKGFTQKKGIDYFDTYSPVSRITTIRTLIALASVHNLVIHQMDVKTAFLNGDLDEEIYMEQPEGFIVKGQEHKVC 136          
BLAST of mRNA_H-paniculata_contig39999.10358.1 vs. uniprot
Match: A0A6L2LJ48_TANCI (Zinc finger, CCHC-type n=1 Tax=Tanacetum cinerariifolium TaxID=118510 RepID=A0A6L2LJ48_TANCI)

HSP 1 Score: 95.5 bits (236), Expect = 8.730e-21
Identity = 51/94 (54.26%), Postives = 66/94 (70.21%), Query Frame = 0
Query:    3 GRKAIRTKWIFKRKLKEDGSVARYKARLVSQGVSQVEGEDFFETNAPVACMSTLRTVFSLAAEYDFELDGMDVDAAYLNAPVEEEPFDKLPPEF 96
            G KA+R KWI KRK+K DGS+ +YKARLV QG  Q EG DFF+T APVA +ST+R + +LAA +D  +  MDV  A+LN  ++EE + K P  F
Sbjct:   14 GCKALRCKWIIKRKMKVDGSIDKYKARLVIQGFRQNEGIDFFDTYAPVARISTIRLLLALAAIHDLVIHQMDVKTAFLNGDLDEEIYMKQPEGF 107          
BLAST of mRNA_H-paniculata_contig39999.10358.1 vs. uniprot
Match: A0A1M2VV58_TRAPU (Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment) n=1 Tax=Trametes pubescens TaxID=154538 RepID=A0A1M2VV58_TRAPU)

HSP 1 Score: 95.5 bits (236), Expect = 1.060e-20
Identity = 47/94 (50.00%), Postives = 68/94 (72.34%), Query Frame = 0
Query:    3 GRKAIRTKWIFKRKLKEDGSVARYKARLVSQGVSQVEGEDFFETNAPVACMSTLRTVFSLAAEYDFELDGMDVDAAYLNAPVEEEPFDKLPPEF 96
            GRK +  KW+FK K   DGS+ +YKARLV++G +QVEG D+ +T APV+  +++RTV +LAA YD ++D MDV +A+LN  ++EE +   PP F
Sbjct: 1029 GRKVVGCKWVFKIKRGPDGSIEKYKARLVAKGFTQVEGIDYTDTFAPVSKFASIRTVLALAAMYDLDVDQMDVKSAFLNGDLDEEIYMTCPPGF 1122          
BLAST of mRNA_H-paniculata_contig39999.10358.1 vs. uniprot
Match: A0A5N6Q4G6_9ASTR (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Mikania micrantha TaxID=192012 RepID=A0A5N6Q4G6_9ASTR)

HSP 1 Score: 92.8 bits (229), Expect = 1.230e-20
Identity = 50/104 (48.08%), Postives = 68/104 (65.38%), Query Frame = 0
Query:    3 GRKAIRTKWIFKRKLKEDGSVARYKARLVSQGVSQVEGEDFFETNAPVACMSTLRTVFSLAAEYDFELDGMDVDAAYLNAPVEEEPFDKLPPEFPLSPKTYHLC 106
            G K +  KWIFKRK+K DGS+ +YKARLV QG  Q EG DFF+T APVA +ST+R + +LA+ +   +  MDV  A+LN  ++EE + K P  F L  +   +C
Sbjct:   18 GCKPLGCKWIFKRKMKVDGSIDKYKARLVIQGFRQKEGTDFFDTYAPVARISTIRLLIALASIHKLLIHQMDVKTAFLNGELDEEVYMKQPEGFVLPGQENKVC 121          
BLAST of mRNA_H-paniculata_contig39999.10358.1 vs. uniprot
Match: A0A4Y9ZVS1_9AGAM (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Hericium alpestre TaxID=135208 RepID=A0A4Y9ZVS1_9AGAM)

HSP 1 Score: 95.1 bits (235), Expect = 1.290e-20
Identity = 49/104 (47.12%), Postives = 69/104 (66.35%), Query Frame = 0
Query:    3 GRKAIRTKWIFKRKLKEDGSVARYKARLVSQGVSQVEGEDFFETNAPVACMSTLRTVFSLAAEYDFELDGMDVDAAYLNAPVEEEPFDKLPPEFPLSPKTYHLC 106
            G   + + W+FK K    G++A+YKARLV+QG SQ+ G D+ +T APVA +S++R + +LAA +D+EL  MDV  AYLN  +EEE F K PP FP   +   +C
Sbjct:   70 GANVVGSWWVFKIKRDASGAIAKYKARLVAQGFSQIPGVDYTDTFAPVAKLSSIRILAALAARFDWELHQMDVKNAYLNGDLEEEIFMKQPPGFPTPGQEQKVC 173          
BLAST of mRNA_H-paniculata_contig39999.10358.1 vs. uniprot
Match: A0A2K3KXP2_TRIPR (Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment) n=1 Tax=Trifolium pratense TaxID=57577 RepID=A0A2K3KXP2_TRIPR)

HSP 1 Score: 89.4 bits (220), Expect = 1.390e-20
Identity = 45/94 (47.87%), Postives = 68/94 (72.34%), Query Frame = 0
Query:    3 GRKAIRTKWIFKRKLKEDGSVARYKARLVSQGVSQVEGEDFFETNAPVACMSTLRTVFSLAAEYDFELDGMDVDAAYLNAPVEEEPFDKLPPEF 96
            G+K I  +W+FK K K DGS+ RYKARLV++G +QVEG D+F+T APVA + T+R + S+AA  ++ L  +DV+ A+L+  + E+ + +LPP F
Sbjct:    5 GKKPIGCRWVFKIKRKSDGSIERYKARLVAKGYTQVEGIDYFDTFAPVAKLVTVRVLLSVAAGKNWPLHQLDVNNAFLHGDLHEDVYMQLPPGF 98          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig39999.10358.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
UPI001CA468C49.610e-2243.27hypothetical protein n=1 Tax=Xylella fastidiosa Ta... [more]
A0A5E8C1W8_9ASCO1.920e-2147.12Reverse transcriptase Ty1/copia-type domain-contai... [more]
Q8LSK0_MAIZE4.150e-2146.15Gag and Pol n=2 Tax=Zea mays TaxID=4577 RepID=Q8LS... [more]
A0A2K3K9W4_TRIPR4.190e-2147.87Retrovirus-related Pol polyprotein from transposon... [more]
A0A4Y1R7U6_PRUDU5.860e-2141.90Transposable element protein n=1 Tax=Prunus dulcis... [more]
A0A6L2LJ48_TANCI8.730e-2154.26Zinc finger, CCHC-type n=1 Tax=Tanacetum cinerarii... [more]
A0A1M2VV58_TRAPU1.060e-2050.00Retrovirus-related Pol polyprotein from transposon... [more]
A0A5N6Q4G6_9ASTR1.230e-2048.08Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A4Y9ZVS1_9AGAM1.290e-2047.12Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A2K3KXP2_TRIPR1.390e-2047.87Retrovirus-related Pol polyprotein from transposon... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013103Reverse transcriptase, RNA-dependent DNA polymerasePFAMPF07727RVT_2coord: 3..97
e-value: 1.7E-23
score: 83.5
NoneNo IPR availablePANTHERPTHR11439:SF273coord: 2..96
IPR039537Retrotransposon Ty1/copia-likePANTHERPTHR11439GAG-POL-RELATED RETROTRANSPOSONcoord: 2..96

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig39999contigH-paniculata_contig39999:45..362 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig39999.10358.1mRNA_H-paniculata_contig39999.10358.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig39999 45..362 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig39999.10358.1 ID=prot_H-paniculata_contig39999.10358.1|Name=mRNA_H-paniculata_contig39999.10358.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=106bp
LAGRKAIRTKWIFKRKLKEDGSVARYKARLVSQGVSQVEGEDFFETNAPV
ACMSTLRTVFSLAAEYDFELDGMDVDAAYLNAPVEEEPFDKLPPEFPLSP
KTYHLC
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013103RVT_2
IPR039537Retrotran_Ty1/copia-like