mRNA_H-paniculata_contig39999.10358.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig39999.10358.1
Unique NamemRNA_H-paniculata_contig39999.10358.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig39999.10358.1 vs. uniprot
Match: A0A5E8C1W8_9ASCO (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Saprochaete ingens TaxID=2606893 RepID=A0A5E8C1W8_9ASCO)

HSP 1 Score: 95.1 bits (235), Expect = 1.920e-21
Identity = 49/104 (47.12%), Postives = 70/104 (67.31%), Query Frame = 1
Query:    7 GRKAIRTKWIFKRKLKEDGSVARYKARLVSQGVSQVEGEDFFETNAPVACMSTLRTVFSLAAEYDFELDGMDVDAAYLNAPVEEEPFDKLPPEFPLSPKTYHLC 318
            GRKAI +KW+FK K K DGS+ RYKARLV  G SQVEG D+ ET APV    T+R V ++AA++ F++  MDV+ A+LN  ++E+ + + P  F +  +   +C
Sbjct:  107 GRKAINSKWVFKVKRKADGSIERYKARLVCIGFSQVEGIDYTETFAPVVRYETVRIVLAIAAQFGFQVHHMDVETAFLNGDLKEDIYMRQPKGFVVKGQESKVC 210          
BLAST of mRNA_H-paniculata_contig39999.10358.1 vs. uniprot
Match: Q8LSK0_MAIZE (Gag and Pol n=2 Tax=Zea mays TaxID=4577 RepID=Q8LSK0_MAIZE)

HSP 1 Score: 96.7 bits (239), Expect = 4.150e-21
Identity = 48/104 (46.15%), Postives = 71/104 (68.27%), Query Frame = 1
Query:    7 GRKAIRTKWIFKRKLKEDGSVARYKARLVSQGVSQVEGEDFFETNAPVACMSTLRTVFSLAAEYDFELDGMDVDAAYLNAPVEEEPFDKLPPEFPLSPKTYHLC 318
            G K +  KW+FK+KLK DG++ +YKARLV++G +Q EGEDFF+T +PVA M+T+R + SLAA Y   +  MDV  A+LN  ++EE + + P  F +  +   +C
Sbjct:  793 GCKPVGCKWVFKKKLKPDGTIEKYKARLVAKGYTQKEGEDFFDTYSPVARMTTIRVLLSLAASYGLLVHQMDVKTAFLNGELDEEIYMEQPDGFVVKGQESKVC 896          
BLAST of mRNA_H-paniculata_contig39999.10358.1 vs. uniprot
Match: A0A6L2LJ48_TANCI (Zinc finger, CCHC-type n=1 Tax=Tanacetum cinerariifolium TaxID=118510 RepID=A0A6L2LJ48_TANCI)

HSP 1 Score: 95.5 bits (236), Expect = 8.730e-21
Identity = 51/94 (54.26%), Postives = 66/94 (70.21%), Query Frame = 1
Query:    7 GRKAIRTKWIFKRKLKEDGSVARYKARLVSQGVSQVEGEDFFETNAPVACMSTLRTVFSLAAEYDFELDGMDVDAAYLNAPVEEEPFDKLPPEF 288
            G KA+R KWI KRK+K DGS+ +YKARLV QG  Q EG DFF+T APVA +ST+R + +LAA +D  +  MDV  A+LN  ++EE + K P  F
Sbjct:   14 GCKALRCKWIIKRKMKVDGSIDKYKARLVIQGFRQNEGIDFFDTYAPVARISTIRLLLALAAIHDLVIHQMDVKTAFLNGDLDEEIYMKQPEGF 107          
BLAST of mRNA_H-paniculata_contig39999.10358.1 vs. uniprot
Match: A0A5N6Q4G6_9ASTR (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Mikania micrantha TaxID=192012 RepID=A0A5N6Q4G6_9ASTR)

HSP 1 Score: 92.8 bits (229), Expect = 1.230e-20
Identity = 50/104 (48.08%), Postives = 68/104 (65.38%), Query Frame = 1
Query:    7 GRKAIRTKWIFKRKLKEDGSVARYKARLVSQGVSQVEGEDFFETNAPVACMSTLRTVFSLAAEYDFELDGMDVDAAYLNAPVEEEPFDKLPPEFPLSPKTYHLC 318
            G K +  KWIFKRK+K DGS+ +YKARLV QG  Q EG DFF+T APVA +ST+R + +LA+ +   +  MDV  A+LN  ++EE + K P  F L  +   +C
Sbjct:   18 GCKPLGCKWIFKRKMKVDGSIDKYKARLVIQGFRQKEGTDFFDTYAPVARISTIRLLIALASIHKLLIHQMDVKTAFLNGELDEEVYMKQPEGFVLPGQENKVC 121          
BLAST of mRNA_H-paniculata_contig39999.10358.1 vs. uniprot
Match: A0A4Y9ZVS1_9AGAM (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Hericium alpestre TaxID=135208 RepID=A0A4Y9ZVS1_9AGAM)

HSP 1 Score: 95.1 bits (235), Expect = 1.290e-20
Identity = 49/104 (47.12%), Postives = 69/104 (66.35%), Query Frame = 1
Query:    7 GRKAIRTKWIFKRKLKEDGSVARYKARLVSQGVSQVEGEDFFETNAPVACMSTLRTVFSLAAEYDFELDGMDVDAAYLNAPVEEEPFDKLPPEFPLSPKTYHLC 318
            G   + + W+FK K    G++A+YKARLV+QG SQ+ G D+ +T APVA +S++R + +LAA +D+EL  MDV  AYLN  +EEE F K PP FP   +   +C
Sbjct:   70 GANVVGSWWVFKIKRDASGAIAKYKARLVAQGFSQIPGVDYTDTFAPVAKLSSIRILAALAARFDWELHQMDVKNAYLNGDLEEEIFMKQPPGFPTPGQEQKVC 173          
BLAST of mRNA_H-paniculata_contig39999.10358.1 vs. uniprot
Match: A0A2G2WEA7_CAPBA (ATP phosphoribosyltransferase 1, chloroplastic n=1 Tax=Capsicum baccatum TaxID=33114 RepID=A0A2G2WEA7_CAPBA)

HSP 1 Score: 95.1 bits (235), Expect = 1.410e-20
Identity = 47/104 (45.19%), Postives = 71/104 (68.27%), Query Frame = 1
Query:    7 GRKAIRTKWIFKRKLKEDGSVARYKARLVSQGVSQVEGEDFFETNAPVACMSTLRTVFSLAAEYDFELDGMDVDAAYLNAPVEEEPFDKLPPEFPLSPKTYHLC 318
            G K + +KWIFKRK+K DGS+ +YKARLV +G +Q EG D+F+T +PV  ++++R + +LAA YD ++  MDV  A+LN  +EEE + + P  F +  K   +C
Sbjct:   34 GNKPLGSKWIFKRKMKTDGSIEKYKARLVVKGFNQKEGLDYFDTYSPVTRITSIRMLIALAAVYDLQIHQMDVKTAFLNGELEEEIYMEQPEGFVVPGKENKVC 137          
BLAST of mRNA_H-paniculata_contig39999.10358.1 vs. uniprot
Match: A0A5E8C4W4_9ASCO (Integrase catalytic domain-containing protein n=1 Tax=Saprochaete ingens TaxID=2606893 RepID=A0A5E8C4W4_9ASCO)

HSP 1 Score: 95.1 bits (235), Expect = 1.420e-20
Identity = 49/104 (47.12%), Postives = 70/104 (67.31%), Query Frame = 1
Query:    7 GRKAIRTKWIFKRKLKEDGSVARYKARLVSQGVSQVEGEDFFETNAPVACMSTLRTVFSLAAEYDFELDGMDVDAAYLNAPVEEEPFDKLPPEFPLSPKTYHLC 318
            GRKAI +KW+FK K K DGS+ RYKARLV  G SQVEG D+ ET APV    T+R V ++AA++ F++  MDV+ A+LN  ++E+ + + P  F +  +   +C
Sbjct:  748 GRKAINSKWVFKVKRKADGSIERYKARLVCIGFSQVEGIDYTETFAPVVRYETVRIVLAIAAQFGFQVHHMDVETAFLNGDLKEDIYMRQPKGFVVKGQESKVC 851          
BLAST of mRNA_H-paniculata_contig39999.10358.1 vs. uniprot
Match: A0A5E8CAT7_9ASCO (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Saprochaete ingens TaxID=2606893 RepID=A0A5E8CAT7_9ASCO)

HSP 1 Score: 95.1 bits (235), Expect = 1.420e-20
Identity = 49/104 (47.12%), Postives = 70/104 (67.31%), Query Frame = 1
Query:    7 GRKAIRTKWIFKRKLKEDGSVARYKARLVSQGVSQVEGEDFFETNAPVACMSTLRTVFSLAAEYDFELDGMDVDAAYLNAPVEEEPFDKLPPEFPLSPKTYHLC 318
            GRKAI +KW+FK K K DGS+ RYKARLV  G SQVEG D+ ET APV    T+R V ++AA++ F++  MDV+ A+LN  ++E+ + + P  F +  +   +C
Sbjct:  490 GRKAINSKWVFKVKRKADGSIERYKARLVCIGFSQVEGIDYTETFAPVVRYETVRIVLAIAAQFGFQVHHMDVETAFLNGDLKEDIYMRQPKGFVVKGQESKVC 593          
BLAST of mRNA_H-paniculata_contig39999.10358.1 vs. uniprot
Match: A0A5E8C4Z1_9ASCO (Integrase catalytic domain-containing protein n=1 Tax=Saprochaete ingens TaxID=2606893 RepID=A0A5E8C4Z1_9ASCO)

HSP 1 Score: 95.1 bits (235), Expect = 1.430e-20
Identity = 49/104 (47.12%), Postives = 70/104 (67.31%), Query Frame = 1
Query:    7 GRKAIRTKWIFKRKLKEDGSVARYKARLVSQGVSQVEGEDFFETNAPVACMSTLRTVFSLAAEYDFELDGMDVDAAYLNAPVEEEPFDKLPPEFPLSPKTYHLC 318
            GRKAI +KW+FK K K DGS+ RYKARLV  G SQVEG D+ ET APV    T+R V ++AA++ F++  MDV+ A+LN  ++E+ + + P  F +  +   +C
Sbjct:  582 GRKAINSKWVFKVKRKADGSIERYKARLVCIGFSQVEGIDYTETFAPVVRYETVRIVLAIAAQFGFQVHHMDVETAFLNGDLKEDIYMRQPKGFVVKGQESKVC 685          
BLAST of mRNA_H-paniculata_contig39999.10358.1 vs. uniprot
Match: A0A5E8BG36_9ASCO (Integrase catalytic domain-containing protein n=1 Tax=Saprochaete ingens TaxID=2606893 RepID=A0A5E8BG36_9ASCO)

HSP 1 Score: 95.1 bits (235), Expect = 1.440e-20
Identity = 49/104 (47.12%), Postives = 70/104 (67.31%), Query Frame = 1
Query:    7 GRKAIRTKWIFKRKLKEDGSVARYKARLVSQGVSQVEGEDFFETNAPVACMSTLRTVFSLAAEYDFELDGMDVDAAYLNAPVEEEPFDKLPPEFPLSPKTYHLC 318
            GRKAI +KW+FK K K DGS+ RYKARLV  G SQVEG D+ ET APV    T+R V ++AA++ F++  MDV+ A+LN  ++E+ + + P  F +  +   +C
Sbjct:  772 GRKAINSKWVFKVKRKADGSIERYKARLVCIGFSQVEGIDYTETFAPVVRYETVRIVLAIAAQFGFQVHHMDVETAFLNGDLKEDIYMRQPKGFVVKGQESKVC 875          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig39999.10358.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A5E8C1W8_9ASCO1.920e-2147.12Reverse transcriptase Ty1/copia-type domain-contai... [more]
Q8LSK0_MAIZE4.150e-2146.15Gag and Pol n=2 Tax=Zea mays TaxID=4577 RepID=Q8LS... [more]
A0A6L2LJ48_TANCI8.730e-2154.26Zinc finger, CCHC-type n=1 Tax=Tanacetum cinerarii... [more]
A0A5N6Q4G6_9ASTR1.230e-2048.08Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A4Y9ZVS1_9AGAM1.290e-2047.12Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A2G2WEA7_CAPBA1.410e-2045.19ATP phosphoribosyltransferase 1, chloroplastic n=1... [more]
A0A5E8C4W4_9ASCO1.420e-2047.12Integrase catalytic domain-containing protein n=1 ... [more]
A0A5E8CAT7_9ASCO1.420e-2047.12Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A5E8C4Z1_9ASCO1.430e-2047.12Integrase catalytic domain-containing protein n=1 ... [more]
A0A5E8BG36_9ASCO1.440e-2047.12Integrase catalytic domain-containing protein n=1 ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig39999contigH-paniculata_contig39999:45..362 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score95.9
Seed ortholog evalue1.2e-17
Seed eggNOG ortholog28532.XP_010526678.1
Hectar predicted targeting categoryother localisation
EggNOG free text desc.cysteine-rich RLK (RECEPTOR-like protein kinase) 8
EggNOG OGs37RIF@33090,3GBWZ@35493,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelStreptophyta
Best eggNOG OGNA|NA|NA
Exons1
Model size318
Cds size318
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930222.9953237-CDS-H-paniculata_contig39999:44..3621622930222.9953237-CDS-H-paniculata_contig39999:44..362Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig39999 45..362 +
1691481197.842613-CDS-H-paniculata_contig39999:44..3621691481197.842613-CDS-H-paniculata_contig39999:44..362Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig39999 45..362 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig39999.10358.1prot_H-paniculata_contig39999.10358.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig39999 45..362 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig39999.10358.1

>prot_H-paniculata_contig39999.10358.1 ID=prot_H-paniculata_contig39999.10358.1|Name=mRNA_H-paniculata_contig39999.10358.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=106bp
LAGRKAIRTKWIFKRKLKEDGSVARYKARLVSQGVSQVEGEDFFETNAPV
ACMSTLRTVFSLAAEYDFELDGMDVDAAYLNAPVEEEPFDKLPPEFPLSP
KTYHLC
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mRNA from alignment at H-paniculata_contig39999:45..362+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig39999.10358.1 ID=mRNA_H-paniculata_contig39999.10358.1|Name=mRNA_H-paniculata_contig39999.10358.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=318bp|location=Sequence derived from alignment at H-paniculata_contig39999:45..362+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CTCGCAGGGCGGAAGGCGATTCGTACGAAATGGATTTTCAAGCGGAAACT GAAGGAGGACGGCAGCGTGGCACGCTACAAAGCGCGACTGGTGTCTCAGG GTGTTTCACAGGTGGAGGGTGAAGATTTCTTTGAGACCAATGCCCCCGTA GCTTGCATGTCGACGTTACGTACTGTTTTTAGCCTGGCCGCCGAATATGA TTTCGAATTAGATGGCATGGACGTAGATGCGGCGTATTTGAACGCCCCGG TAGAAGAAGAGCCGTTTGACAAGCTACCCCCCGAGTTTCCCCTTTCTCCC AAGACATACCATTTGTGC
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Coding sequence (CDS) from alignment at H-paniculata_contig39999:45..362+

>mRNA_H-paniculata_contig39999.10358.1 ID=mRNA_H-paniculata_contig39999.10358.1|Name=mRNA_H-paniculata_contig39999.10358.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=636bp|location=Sequence derived from alignment at H-paniculata_contig39999:45..362+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CTCGCAGGGCGGAAGGCGATTCGTACGAAATGGATTTTCAAGCGGAAACT
GAAGGAGGACGGCAGCGTGGCACGCTACAAAGCGCGACTGGTGTCTCAGG
GTGTTTCACAGGTGGAGGGTGAAGATTTCTTTGAGACCAATGCCCCCGTA
GCTTGCATGTCGACGTTACGTACTGTTTTTAGCCTGGCCGCCGAATATGA
TTTCGAATTAGATGGCATGGACGTAGATGCGGCGTATTTGAACGCCCCGG
TAGAAGAAGAGCCGTTTGACAAGCTACCCCCCGAGTTTCCCCTTTCTCCC
AAGACATACCATTTGTGCCTCGCAGGGCGGAAGGCGATTCGTACGAAATG
GATTTTCAAGCGGAAACTGAAGGAGGACGGCAGCGTGGCACGCTACAAAG
CGCGACTGGTGTCTCAGGGTGTTTCACAGGTGGAGGGTGAAGATTTCTTT
GAGACCAATGCCCCCGTAGCTTGCATGTCGACGTTACGTACTGTTTTTAG
CCTGGCCGCCGAATATGATTTCGAATTAGATGGCATGGACGTAGATGCGG
CGTATTTGAACGCCCCGGTAGAAGAAGAGCCGTTTGACAAGCTACCCCCC
GAGTTTCCCCTTTCTCCCAAGACATACCATTTGTGC
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