mRNA_H-paniculata_contig39999.10358.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig39999.10358.1 vs. uniprot
Match: A0A5E8C1W8_9ASCO (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Saprochaete ingens TaxID=2606893 RepID=A0A5E8C1W8_9ASCO) HSP 1 Score: 95.1 bits (235), Expect = 1.920e-21 Identity = 49/104 (47.12%), Postives = 70/104 (67.31%), Query Frame = 1
Query: 7 GRKAIRTKWIFKRKLKEDGSVARYKARLVSQGVSQVEGEDFFETNAPVACMSTLRTVFSLAAEYDFELDGMDVDAAYLNAPVEEEPFDKLPPEFPLSPKTYHLC 318
GRKAI +KW+FK K K DGS+ RYKARLV G SQVEG D+ ET APV T+R V ++AA++ F++ MDV+ A+LN ++E+ + + P F + + +C
Sbjct: 107 GRKAINSKWVFKVKRKADGSIERYKARLVCIGFSQVEGIDYTETFAPVVRYETVRIVLAIAAQFGFQVHHMDVETAFLNGDLKEDIYMRQPKGFVVKGQESKVC 210
BLAST of mRNA_H-paniculata_contig39999.10358.1 vs. uniprot
Match: Q8LSK0_MAIZE (Gag and Pol n=2 Tax=Zea mays TaxID=4577 RepID=Q8LSK0_MAIZE) HSP 1 Score: 96.7 bits (239), Expect = 4.150e-21 Identity = 48/104 (46.15%), Postives = 71/104 (68.27%), Query Frame = 1
Query: 7 GRKAIRTKWIFKRKLKEDGSVARYKARLVSQGVSQVEGEDFFETNAPVACMSTLRTVFSLAAEYDFELDGMDVDAAYLNAPVEEEPFDKLPPEFPLSPKTYHLC 318
G K + KW+FK+KLK DG++ +YKARLV++G +Q EGEDFF+T +PVA M+T+R + SLAA Y + MDV A+LN ++EE + + P F + + +C
Sbjct: 793 GCKPVGCKWVFKKKLKPDGTIEKYKARLVAKGYTQKEGEDFFDTYSPVARMTTIRVLLSLAASYGLLVHQMDVKTAFLNGELDEEIYMEQPDGFVVKGQESKVC 896
BLAST of mRNA_H-paniculata_contig39999.10358.1 vs. uniprot
Match: A0A6L2LJ48_TANCI (Zinc finger, CCHC-type n=1 Tax=Tanacetum cinerariifolium TaxID=118510 RepID=A0A6L2LJ48_TANCI) HSP 1 Score: 95.5 bits (236), Expect = 8.730e-21 Identity = 51/94 (54.26%), Postives = 66/94 (70.21%), Query Frame = 1
Query: 7 GRKAIRTKWIFKRKLKEDGSVARYKARLVSQGVSQVEGEDFFETNAPVACMSTLRTVFSLAAEYDFELDGMDVDAAYLNAPVEEEPFDKLPPEF 288
G KA+R KWI KRK+K DGS+ +YKARLV QG Q EG DFF+T APVA +ST+R + +LAA +D + MDV A+LN ++EE + K P F
Sbjct: 14 GCKALRCKWIIKRKMKVDGSIDKYKARLVIQGFRQNEGIDFFDTYAPVARISTIRLLLALAAIHDLVIHQMDVKTAFLNGDLDEEIYMKQPEGF 107
BLAST of mRNA_H-paniculata_contig39999.10358.1 vs. uniprot
Match: A0A5N6Q4G6_9ASTR (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Mikania micrantha TaxID=192012 RepID=A0A5N6Q4G6_9ASTR) HSP 1 Score: 92.8 bits (229), Expect = 1.230e-20 Identity = 50/104 (48.08%), Postives = 68/104 (65.38%), Query Frame = 1
Query: 7 GRKAIRTKWIFKRKLKEDGSVARYKARLVSQGVSQVEGEDFFETNAPVACMSTLRTVFSLAAEYDFELDGMDVDAAYLNAPVEEEPFDKLPPEFPLSPKTYHLC 318
G K + KWIFKRK+K DGS+ +YKARLV QG Q EG DFF+T APVA +ST+R + +LA+ + + MDV A+LN ++EE + K P F L + +C
Sbjct: 18 GCKPLGCKWIFKRKMKVDGSIDKYKARLVIQGFRQKEGTDFFDTYAPVARISTIRLLIALASIHKLLIHQMDVKTAFLNGELDEEVYMKQPEGFVLPGQENKVC 121
BLAST of mRNA_H-paniculata_contig39999.10358.1 vs. uniprot
Match: A0A4Y9ZVS1_9AGAM (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Hericium alpestre TaxID=135208 RepID=A0A4Y9ZVS1_9AGAM) HSP 1 Score: 95.1 bits (235), Expect = 1.290e-20 Identity = 49/104 (47.12%), Postives = 69/104 (66.35%), Query Frame = 1
Query: 7 GRKAIRTKWIFKRKLKEDGSVARYKARLVSQGVSQVEGEDFFETNAPVACMSTLRTVFSLAAEYDFELDGMDVDAAYLNAPVEEEPFDKLPPEFPLSPKTYHLC 318
G + + W+FK K G++A+YKARLV+QG SQ+ G D+ +T APVA +S++R + +LAA +D+EL MDV AYLN +EEE F K PP FP + +C
Sbjct: 70 GANVVGSWWVFKIKRDASGAIAKYKARLVAQGFSQIPGVDYTDTFAPVAKLSSIRILAALAARFDWELHQMDVKNAYLNGDLEEEIFMKQPPGFPTPGQEQKVC 173
BLAST of mRNA_H-paniculata_contig39999.10358.1 vs. uniprot
Match: A0A2G2WEA7_CAPBA (ATP phosphoribosyltransferase 1, chloroplastic n=1 Tax=Capsicum baccatum TaxID=33114 RepID=A0A2G2WEA7_CAPBA) HSP 1 Score: 95.1 bits (235), Expect = 1.410e-20 Identity = 47/104 (45.19%), Postives = 71/104 (68.27%), Query Frame = 1
Query: 7 GRKAIRTKWIFKRKLKEDGSVARYKARLVSQGVSQVEGEDFFETNAPVACMSTLRTVFSLAAEYDFELDGMDVDAAYLNAPVEEEPFDKLPPEFPLSPKTYHLC 318
G K + +KWIFKRK+K DGS+ +YKARLV +G +Q EG D+F+T +PV ++++R + +LAA YD ++ MDV A+LN +EEE + + P F + K +C
Sbjct: 34 GNKPLGSKWIFKRKMKTDGSIEKYKARLVVKGFNQKEGLDYFDTYSPVTRITSIRMLIALAAVYDLQIHQMDVKTAFLNGELEEEIYMEQPEGFVVPGKENKVC 137
BLAST of mRNA_H-paniculata_contig39999.10358.1 vs. uniprot
Match: A0A5E8C4W4_9ASCO (Integrase catalytic domain-containing protein n=1 Tax=Saprochaete ingens TaxID=2606893 RepID=A0A5E8C4W4_9ASCO) HSP 1 Score: 95.1 bits (235), Expect = 1.420e-20 Identity = 49/104 (47.12%), Postives = 70/104 (67.31%), Query Frame = 1
Query: 7 GRKAIRTKWIFKRKLKEDGSVARYKARLVSQGVSQVEGEDFFETNAPVACMSTLRTVFSLAAEYDFELDGMDVDAAYLNAPVEEEPFDKLPPEFPLSPKTYHLC 318
GRKAI +KW+FK K K DGS+ RYKARLV G SQVEG D+ ET APV T+R V ++AA++ F++ MDV+ A+LN ++E+ + + P F + + +C
Sbjct: 748 GRKAINSKWVFKVKRKADGSIERYKARLVCIGFSQVEGIDYTETFAPVVRYETVRIVLAIAAQFGFQVHHMDVETAFLNGDLKEDIYMRQPKGFVVKGQESKVC 851
BLAST of mRNA_H-paniculata_contig39999.10358.1 vs. uniprot
Match: A0A5E8CAT7_9ASCO (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Saprochaete ingens TaxID=2606893 RepID=A0A5E8CAT7_9ASCO) HSP 1 Score: 95.1 bits (235), Expect = 1.420e-20 Identity = 49/104 (47.12%), Postives = 70/104 (67.31%), Query Frame = 1
Query: 7 GRKAIRTKWIFKRKLKEDGSVARYKARLVSQGVSQVEGEDFFETNAPVACMSTLRTVFSLAAEYDFELDGMDVDAAYLNAPVEEEPFDKLPPEFPLSPKTYHLC 318
GRKAI +KW+FK K K DGS+ RYKARLV G SQVEG D+ ET APV T+R V ++AA++ F++ MDV+ A+LN ++E+ + + P F + + +C
Sbjct: 490 GRKAINSKWVFKVKRKADGSIERYKARLVCIGFSQVEGIDYTETFAPVVRYETVRIVLAIAAQFGFQVHHMDVETAFLNGDLKEDIYMRQPKGFVVKGQESKVC 593
BLAST of mRNA_H-paniculata_contig39999.10358.1 vs. uniprot
Match: A0A5E8C4Z1_9ASCO (Integrase catalytic domain-containing protein n=1 Tax=Saprochaete ingens TaxID=2606893 RepID=A0A5E8C4Z1_9ASCO) HSP 1 Score: 95.1 bits (235), Expect = 1.430e-20 Identity = 49/104 (47.12%), Postives = 70/104 (67.31%), Query Frame = 1
Query: 7 GRKAIRTKWIFKRKLKEDGSVARYKARLVSQGVSQVEGEDFFETNAPVACMSTLRTVFSLAAEYDFELDGMDVDAAYLNAPVEEEPFDKLPPEFPLSPKTYHLC 318
GRKAI +KW+FK K K DGS+ RYKARLV G SQVEG D+ ET APV T+R V ++AA++ F++ MDV+ A+LN ++E+ + + P F + + +C
Sbjct: 582 GRKAINSKWVFKVKRKADGSIERYKARLVCIGFSQVEGIDYTETFAPVVRYETVRIVLAIAAQFGFQVHHMDVETAFLNGDLKEDIYMRQPKGFVVKGQESKVC 685
BLAST of mRNA_H-paniculata_contig39999.10358.1 vs. uniprot
Match: A0A5E8BG36_9ASCO (Integrase catalytic domain-containing protein n=1 Tax=Saprochaete ingens TaxID=2606893 RepID=A0A5E8BG36_9ASCO) HSP 1 Score: 95.1 bits (235), Expect = 1.440e-20 Identity = 49/104 (47.12%), Postives = 70/104 (67.31%), Query Frame = 1
Query: 7 GRKAIRTKWIFKRKLKEDGSVARYKARLVSQGVSQVEGEDFFETNAPVACMSTLRTVFSLAAEYDFELDGMDVDAAYLNAPVEEEPFDKLPPEFPLSPKTYHLC 318
GRKAI +KW+FK K K DGS+ RYKARLV G SQVEG D+ ET APV T+R V ++AA++ F++ MDV+ A+LN ++E+ + + P F + + +C
Sbjct: 772 GRKAINSKWVFKVKRKADGSIERYKARLVCIGFSQVEGIDYTETFAPVVRYETVRIVLAIAAQFGFQVHHMDVETAFLNGDLKEDIYMRQPKGFVVKGQESKVC 875 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig39999.10358.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig39999.10358.1 >prot_H-paniculata_contig39999.10358.1 ID=prot_H-paniculata_contig39999.10358.1|Name=mRNA_H-paniculata_contig39999.10358.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=106bp LAGRKAIRTKWIFKRKLKEDGSVARYKARLVSQGVSQVEGEDFFETNAPVback to top mRNA from alignment at H-paniculata_contig39999:45..362+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig39999.10358.1 ID=mRNA_H-paniculata_contig39999.10358.1|Name=mRNA_H-paniculata_contig39999.10358.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=318bp|location=Sequence derived from alignment at H-paniculata_contig39999:45..362+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig39999:45..362+ >mRNA_H-paniculata_contig39999.10358.1 ID=mRNA_H-paniculata_contig39999.10358.1|Name=mRNA_H-paniculata_contig39999.10358.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=636bp|location=Sequence derived from alignment at H-paniculata_contig39999:45..362+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |