prot_H-paniculata_contig39989.10356.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig39989.10356.1
Unique Nameprot_H-paniculata_contig39989.10356.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length84
Homology
BLAST of mRNA_H-paniculata_contig39989.10356.1 vs. uniprot
Match: UPI000E6F524C (uncharacterized protein LOC113279956 n=1 Tax=Papaver somniferum TaxID=3469 RepID=UPI000E6F524C)

HSP 1 Score: 72.8 bits (177), Expect = 1.060e-14
Identity = 36/69 (52.17%), Postives = 50/69 (72.46%), Query Frame = 0
Query:   16 AMDREMIELKEAGTFVETELTVGRKAIGSKWVLTWKKDQDGFILKPKARFVCLGNLQVAGVDYDDTFAP 84
            AM  E+  L+E GT+  TEL  G+KA+GSKW+ T K D++G +++ KAR V  GN QV G+DY++TFAP
Sbjct:   33 AMAEEIRALEEQGTWDLTELPPGKKALGSKWIYTEKYDENGKLVRLKARLVIFGNHQVEGLDYNETFAP 101          
BLAST of mRNA_H-paniculata_contig39989.10356.1 vs. uniprot
Match: UPI000E6F64D6 (uncharacterized protein LOC113273194 n=1 Tax=Papaver somniferum TaxID=3469 RepID=UPI000E6F64D6)

HSP 1 Score: 75.5 bits (184), Expect = 4.700e-14
Identity = 37/69 (53.62%), Postives = 51/69 (73.91%), Query Frame = 0
Query:   16 AMDREMIELKEAGTFVETELTVGRKAIGSKWVLTWKKDQDGFILKPKARFVCLGNLQVAGVDYDDTFAP 84
            AM  E+  L+E GT+  TEL  G+KA+GSKW+ T K D++G +++ KARFV  GN QV G+DY++TFAP
Sbjct:  710 AMAEEIRALEEQGTWDLTELPPGKKALGSKWIYTEKYDENGTLVRLKARFVIFGNHQVEGLDYNETFAP 778          
BLAST of mRNA_H-paniculata_contig39989.10356.1 vs. uniprot
Match: UPI000B8A78E3 (uncharacterized protein LOC110797998 n=1 Tax=Spinacia oleracea TaxID=3562 RepID=UPI000B8A78E3)

HSP 1 Score: 75.1 bits (183), Expect = 5.910e-14
Identity = 36/69 (52.17%), Postives = 50/69 (72.46%), Query Frame = 0
Query:   16 AMDREMIELKEAGTFVETELTVGRKAIGSKWVLTWKKDQDGFILKPKARFVCLGNLQVAGVDYDDTFAP 84
            A+  E+  L+  GT+V  EL  G+KA+GSKWV T K+D+DG +++  AR VCLGN QV G DY+++FAP
Sbjct:  321 AIGAEIDALEGQGTWVLQELPPGKKALGSKWVYTEKRDEDGNLIRNNARLVCLGNHQVEGTDYNESFAP 389          
BLAST of mRNA_H-paniculata_contig39989.10356.1 vs. uniprot
Match: UPI000E6F8969 (uncharacterized protein LOC113296259 n=1 Tax=Papaver somniferum TaxID=3469 RepID=UPI000E6F8969)

HSP 1 Score: 73.2 bits (178), Expect = 3.010e-13
Identity = 36/69 (52.17%), Postives = 50/69 (72.46%), Query Frame = 0
Query:   16 AMDREMIELKEAGTFVETELTVGRKAIGSKWVLTWKKDQDGFILKPKARFVCLGNLQVAGVDYDDTFAP 84
            AM  E+  L+E GT+  TEL  G+KA+GSKW+ T K D++G +++ KAR V  GN QV G+DY++TFAP
Sbjct:  403 AMAEEIRALEEQGTWDLTELPPGKKALGSKWIYTEKYDENGSLVRLKARLVIFGNHQVEGLDYNETFAP 471          
BLAST of mRNA_H-paniculata_contig39989.10356.1 vs. uniprot
Match: UPI000B8A7035 (uncharacterized protein LOC110788974 n=1 Tax=Spinacia oleracea TaxID=3562 RepID=UPI000B8A7035)

HSP 1 Score: 73.2 bits (178), Expect = 3.050e-13
Identity = 37/70 (52.86%), Postives = 50/70 (71.43%), Query Frame = 0
Query:   15 EAMDREMIELKEAGTFVETELTVGRKAIGSKWVLTWKKDQDGFILKPKARFVCLGNLQVAGVDYDDTFAP 84
            +AM  E+  L+   T+V  +L  G+KA+GSKWV T KKD+DG +++ KAR V LGN QV G DY++TFAP
Sbjct:  533 DAMAAEIEALEGQATWVLEKLPPGKKALGSKWVYTEKKDEDGNLIRNKARLVFLGNHQVEGTDYNETFAP 602          
BLAST of mRNA_H-paniculata_contig39989.10356.1 vs. uniprot
Match: A0A6H5LAZ3_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LAZ3_9PHAE)

HSP 1 Score: 68.9 bits (167), Expect = 8.110e-13
Identity = 36/79 (45.57%), Postives = 52/79 (65.82%), Query Frame = 0
Query:    1 YRDVLESKYKSVFLEAMDREMIELKEAGTFVET-ELTVGRKAIGSKWVLTWKKDQDGFILKPKARFVCLGNLQVAGVDY 78
            Y+DV+ SKYK  +  AM +E+ +  + GTF +  EL  GRKAIGSKWV +WK ++ G I+  KAR V  G  ++ G+D+
Sbjct:    3 YKDVMCSKYKVFWEAAMKKEIDDHDKTGTFTKVKELPDGRKAIGSKWVFSWKTNEKGLIVDFKARMVARGFSEIPGIDF 81          
BLAST of mRNA_H-paniculata_contig39989.10356.1 vs. uniprot
Match: A0A2K3LWA1_TRIPR (Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment) n=1 Tax=Trifolium pratense TaxID=57577 RepID=A0A2K3LWA1_TRIPR)

HSP 1 Score: 71.2 bits (173), Expect = 1.410e-12
Identity = 36/70 (51.43%), Postives = 46/70 (65.71%), Query Frame = 0
Query:   15 EAMDREMIELKEAGTFVETELTVGRKAIGSKWVLTWKKDQDGFILKPKARFVCLGNLQVAGVDYDDTFAP 84
            EAM  E+  L+  GT+  T L +G+K +G KWV   K + DG + + KAR V LGN QV GVDYD+TFAP
Sbjct:   67 EAMKSEIQALENNGTWTITHLPIGKKTLGCKWVYKVKHNSDGTVERYKARLVILGNHQVEGVDYDETFAP 136          
BLAST of mRNA_H-paniculata_contig39989.10356.1 vs. uniprot
Match: A0A182GIT5_AEDAL (Reverse transcriptase Ty1/copia-type domain-containing protein n=2 Tax=Aedes albopictus TaxID=7160 RepID=A0A182GIT5_AEDAL)

HSP 1 Score: 70.9 bits (172), Expect = 1.920e-12
Identity = 35/69 (50.72%), Postives = 45/69 (65.22%), Query Frame = 0
Query:   16 AMDREMIELKEAGTFVETELTVGRKAIGSKWVLTWKKDQDGFILKPKARFVCLGNLQVAGVDYDDTFAP 84
            AMD EM  L+E GT+  T+L  GRKA+G KW+   K D+DG +++ KAR V  G  Q  G DYD+ FAP
Sbjct:   12 AMDDEMTSLRENGTWQLTDLPPGRKAVGCKWIFKRKLDEDGNVVRYKARLVAQGFTQKFGTDYDEVFAP 80          
BLAST of mRNA_H-paniculata_contig39989.10356.1 vs. uniprot
Match: A0A8H8IXS8_9AGAM (Integrase core domain protein n=1 Tax=Ceratobasidium sp. AG-Ba TaxID=170446 RepID=A0A8H8IXS8_9AGAM)

HSP 1 Score: 70.5 bits (171), Expect = 2.760e-12
Identity = 35/74 (47.30%), Postives = 51/74 (68.92%), Query Frame = 0
Query:   11 SVFLEAMDREMIELKEAGTFVETELTVGRKAIGSKWVLTWKKDQDGFILKPKARFVCLGNLQVAGVDYDDTFAP 84
            S++ EAM+ E+  L++ GT+   EL  GRKAIG+KWVLT K+D++G  ++ KAR V  G  Q  G+D+  T+AP
Sbjct: 1076 SIWKEAMESEVATLEKMGTYEPVELPPGRKAIGNKWVLTLKRDENGKPVRYKARLVAQGFSQQPGIDFGHTYAP 1149          
BLAST of mRNA_H-paniculata_contig39989.10356.1 vs. uniprot
Match: A0A6H5K088_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K088_9PHAE)

HSP 1 Score: 69.3 bits (168), Expect = 2.890e-12
Identity = 38/79 (48.10%), Postives = 51/79 (64.56%), Query Frame = 0
Query:    1 YRDVLESKYKSVFLEAMDREMIELKEAGTFVET-ELTVGRKAIGSKWVLTWKKDQDGFILKPKARFVCLGNLQVAGVDY 78
            Y+DV+ SKYK  +  AM +E+    + GTF +  EL  GRKAIGSKWV +WK ++ G I+  KAR V  G  QV G+D+
Sbjct:   58 YKDVMCSKYKIFWEAAMKKEIDGHDKTGTFTKVKELPEGRKAIGSKWVFSWKTNEKGLIVDFKARTVARGFFQVPGIDF 136          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig39989.10356.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
UPI000E6F524C1.060e-1452.17uncharacterized protein LOC113279956 n=1 Tax=Papav... [more]
UPI000E6F64D64.700e-1453.62uncharacterized protein LOC113273194 n=1 Tax=Papav... [more]
UPI000B8A78E35.910e-1452.17uncharacterized protein LOC110797998 n=1 Tax=Spina... [more]
UPI000E6F89693.010e-1352.17uncharacterized protein LOC113296259 n=1 Tax=Papav... [more]
UPI000B8A70353.050e-1352.86uncharacterized protein LOC110788974 n=1 Tax=Spina... [more]
A0A6H5LAZ3_9PHAE8.110e-1345.57Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A2K3LWA1_TRIPR1.410e-1251.43Retrovirus-related Pol polyprotein from transposon... [more]
A0A182GIT5_AEDAL1.920e-1250.72Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A8H8IXS8_9AGAM2.760e-1247.30Integrase core domain protein n=1 Tax=Ceratobasidi... [more]
A0A6H5K088_9PHAE2.890e-1248.10Reverse transcriptase Ty1/copia-type domain-contai... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013103Reverse transcriptase, RNA-dependent DNA polymerasePFAMPF07727RVT_2coord: 34..84
e-value: 8.8E-10
score: 38.6
IPR039537Retrotransposon Ty1/copia-likePANTHERPTHR11439GAG-POL-RELATED RETROTRANSPOSONcoord: 13..84
NoneNo IPR availablePANTHERPTHR11439:SF273coord: 13..84

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig39989contigH-paniculata_contig39989:36..287 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig39989.10356.1mRNA_H-paniculata_contig39989.10356.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig39989 36..287 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig39989.10356.1 ID=prot_H-paniculata_contig39989.10356.1|Name=mRNA_H-paniculata_contig39989.10356.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=84bp
YRDVLESKYKSVFLEAMDREMIELKEAGTFVETELTVGRKAIGSKWVLTW
KKDQDGFILKPKARFVCLGNLQVAGVDYDDTFAP
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013103RVT_2
IPR039537Retrotran_Ty1/copia-like