mRNA_H-paniculata_contig39989.10356.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig39989.10356.1
Unique NamemRNA_H-paniculata_contig39989.10356.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig39989.10356.1 vs. uniprot
Match: UPI000E6F524C (uncharacterized protein LOC113279956 n=1 Tax=Papaver somniferum TaxID=3469 RepID=UPI000E6F524C)

HSP 1 Score: 72.8 bits (177), Expect = 1.060e-14
Identity = 36/69 (52.17%), Postives = 50/69 (72.46%), Query Frame = 1
Query:   46 AMDREMIELKEAGTFVETELTVGRKAIGSKWVLTWKKDQDGFILKPKARFVCLGNLQVAGVDYDDTFAP 252
            AM  E+  L+E GT+  TEL  G+KA+GSKW+ T K D++G +++ KAR V  GN QV G+DY++TFAP
Sbjct:   33 AMAEEIRALEEQGTWDLTELPPGKKALGSKWIYTEKYDENGKLVRLKARLVIFGNHQVEGLDYNETFAP 101          
BLAST of mRNA_H-paniculata_contig39989.10356.1 vs. uniprot
Match: UPI000E6F64D6 (uncharacterized protein LOC113273194 n=1 Tax=Papaver somniferum TaxID=3469 RepID=UPI000E6F64D6)

HSP 1 Score: 75.5 bits (184), Expect = 4.700e-14
Identity = 37/69 (53.62%), Postives = 51/69 (73.91%), Query Frame = 1
Query:   46 AMDREMIELKEAGTFVETELTVGRKAIGSKWVLTWKKDQDGFILKPKARFVCLGNLQVAGVDYDDTFAP 252
            AM  E+  L+E GT+  TEL  G+KA+GSKW+ T K D++G +++ KARFV  GN QV G+DY++TFAP
Sbjct:  710 AMAEEIRALEEQGTWDLTELPPGKKALGSKWIYTEKYDENGTLVRLKARFVIFGNHQVEGLDYNETFAP 778          
BLAST of mRNA_H-paniculata_contig39989.10356.1 vs. uniprot
Match: UPI000B8A78E3 (uncharacterized protein LOC110797998 n=1 Tax=Spinacia oleracea TaxID=3562 RepID=UPI000B8A78E3)

HSP 1 Score: 75.1 bits (183), Expect = 5.910e-14
Identity = 36/69 (52.17%), Postives = 50/69 (72.46%), Query Frame = 1
Query:   46 AMDREMIELKEAGTFVETELTVGRKAIGSKWVLTWKKDQDGFILKPKARFVCLGNLQVAGVDYDDTFAP 252
            A+  E+  L+  GT+V  EL  G+KA+GSKWV T K+D+DG +++  AR VCLGN QV G DY+++FAP
Sbjct:  321 AIGAEIDALEGQGTWVLQELPPGKKALGSKWVYTEKRDEDGNLIRNNARLVCLGNHQVEGTDYNESFAP 389          
BLAST of mRNA_H-paniculata_contig39989.10356.1 vs. uniprot
Match: UPI000E6F8969 (uncharacterized protein LOC113296259 n=1 Tax=Papaver somniferum TaxID=3469 RepID=UPI000E6F8969)

HSP 1 Score: 73.2 bits (178), Expect = 3.010e-13
Identity = 36/69 (52.17%), Postives = 50/69 (72.46%), Query Frame = 1
Query:   46 AMDREMIELKEAGTFVETELTVGRKAIGSKWVLTWKKDQDGFILKPKARFVCLGNLQVAGVDYDDTFAP 252
            AM  E+  L+E GT+  TEL  G+KA+GSKW+ T K D++G +++ KAR V  GN QV G+DY++TFAP
Sbjct:  403 AMAEEIRALEEQGTWDLTELPPGKKALGSKWIYTEKYDENGSLVRLKARLVIFGNHQVEGLDYNETFAP 471          
BLAST of mRNA_H-paniculata_contig39989.10356.1 vs. uniprot
Match: UPI000B8A7035 (uncharacterized protein LOC110788974 n=1 Tax=Spinacia oleracea TaxID=3562 RepID=UPI000B8A7035)

HSP 1 Score: 73.2 bits (178), Expect = 3.050e-13
Identity = 37/70 (52.86%), Postives = 50/70 (71.43%), Query Frame = 1
Query:   43 EAMDREMIELKEAGTFVETELTVGRKAIGSKWVLTWKKDQDGFILKPKARFVCLGNLQVAGVDYDDTFAP 252
            +AM  E+  L+   T+V  +L  G+KA+GSKWV T KKD+DG +++ KAR V LGN QV G DY++TFAP
Sbjct:  533 DAMAAEIEALEGQATWVLEKLPPGKKALGSKWVYTEKKDEDGNLIRNKARLVFLGNHQVEGTDYNETFAP 602          
BLAST of mRNA_H-paniculata_contig39989.10356.1 vs. uniprot
Match: A0A6H5LAZ3_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LAZ3_9PHAE)

HSP 1 Score: 68.9 bits (167), Expect = 8.110e-13
Identity = 36/79 (45.57%), Postives = 52/79 (65.82%), Query Frame = 1
Query:    1 YRDVLESKYKSVFLEAMDREMIELKEAGTFVET-ELTVGRKAIGSKWVLTWKKDQDGFILKPKARFVCLGNLQVAGVDY 234
            Y+DV+ SKYK  +  AM +E+ +  + GTF +  EL  GRKAIGSKWV +WK ++ G I+  KAR V  G  ++ G+D+
Sbjct:    3 YKDVMCSKYKVFWEAAMKKEIDDHDKTGTFTKVKELPDGRKAIGSKWVFSWKTNEKGLIVDFKARMVARGFSEIPGIDF 81          
BLAST of mRNA_H-paniculata_contig39989.10356.1 vs. uniprot
Match: A0A2K3LWA1_TRIPR (Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment) n=1 Tax=Trifolium pratense TaxID=57577 RepID=A0A2K3LWA1_TRIPR)

HSP 1 Score: 71.2 bits (173), Expect = 1.410e-12
Identity = 36/70 (51.43%), Postives = 46/70 (65.71%), Query Frame = 1
Query:   43 EAMDREMIELKEAGTFVETELTVGRKAIGSKWVLTWKKDQDGFILKPKARFVCLGNLQVAGVDYDDTFAP 252
            EAM  E+  L+  GT+  T L +G+K +G KWV   K + DG + + KAR V LGN QV GVDYD+TFAP
Sbjct:   67 EAMKSEIQALENNGTWTITHLPIGKKTLGCKWVYKVKHNSDGTVERYKARLVILGNHQVEGVDYDETFAP 136          
BLAST of mRNA_H-paniculata_contig39989.10356.1 vs. uniprot
Match: A0A182GIT5_AEDAL (Reverse transcriptase Ty1/copia-type domain-containing protein n=2 Tax=Aedes albopictus TaxID=7160 RepID=A0A182GIT5_AEDAL)

HSP 1 Score: 70.9 bits (172), Expect = 1.920e-12
Identity = 35/69 (50.72%), Postives = 45/69 (65.22%), Query Frame = 1
Query:   46 AMDREMIELKEAGTFVETELTVGRKAIGSKWVLTWKKDQDGFILKPKARFVCLGNLQVAGVDYDDTFAP 252
            AMD EM  L+E GT+  T+L  GRKA+G KW+   K D+DG +++ KAR V  G  Q  G DYD+ FAP
Sbjct:   12 AMDDEMTSLRENGTWQLTDLPPGRKAVGCKWIFKRKLDEDGNVVRYKARLVAQGFTQKFGTDYDEVFAP 80          
BLAST of mRNA_H-paniculata_contig39989.10356.1 vs. uniprot
Match: A0A8H8IXS8_9AGAM (Integrase core domain protein n=1 Tax=Ceratobasidium sp. AG-Ba TaxID=170446 RepID=A0A8H8IXS8_9AGAM)

HSP 1 Score: 70.5 bits (171), Expect = 2.760e-12
Identity = 35/74 (47.30%), Postives = 51/74 (68.92%), Query Frame = 1
Query:   31 SVFLEAMDREMIELKEAGTFVETELTVGRKAIGSKWVLTWKKDQDGFILKPKARFVCLGNLQVAGVDYDDTFAP 252
            S++ EAM+ E+  L++ GT+   EL  GRKAIG+KWVLT K+D++G  ++ KAR V  G  Q  G+D+  T+AP
Sbjct: 1076 SIWKEAMESEVATLEKMGTYEPVELPPGRKAIGNKWVLTLKRDENGKPVRYKARLVAQGFSQQPGIDFGHTYAP 1149          
BLAST of mRNA_H-paniculata_contig39989.10356.1 vs. uniprot
Match: A0A6H5K088_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K088_9PHAE)

HSP 1 Score: 69.3 bits (168), Expect = 2.890e-12
Identity = 38/79 (48.10%), Postives = 51/79 (64.56%), Query Frame = 1
Query:    1 YRDVLESKYKSVFLEAMDREMIELKEAGTFVET-ELTVGRKAIGSKWVLTWKKDQDGFILKPKARFVCLGNLQVAGVDY 234
            Y+DV+ SKYK  +  AM +E+    + GTF +  EL  GRKAIGSKWV +WK ++ G I+  KAR V  G  QV G+D+
Sbjct:   58 YKDVMCSKYKIFWEAAMKKEIDGHDKTGTFTKVKELPEGRKAIGSKWVFSWKTNEKGLIVDFKARTVARGFFQVPGIDF 136          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig39989.10356.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
UPI000E6F524C1.060e-1452.17uncharacterized protein LOC113279956 n=1 Tax=Papav... [more]
UPI000E6F64D64.700e-1453.62uncharacterized protein LOC113273194 n=1 Tax=Papav... [more]
UPI000B8A78E35.910e-1452.17uncharacterized protein LOC110797998 n=1 Tax=Spina... [more]
UPI000E6F89693.010e-1352.17uncharacterized protein LOC113296259 n=1 Tax=Papav... [more]
UPI000B8A70353.050e-1352.86uncharacterized protein LOC110788974 n=1 Tax=Spina... [more]
A0A6H5LAZ3_9PHAE8.110e-1345.57Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A2K3LWA1_TRIPR1.410e-1251.43Retrovirus-related Pol polyprotein from transposon... [more]
A0A182GIT5_AEDAL1.920e-1250.72Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A8H8IXS8_9AGAM2.760e-1247.30Integrase core domain protein n=1 Tax=Ceratobasidi... [more]
A0A6H5K088_9PHAE2.890e-1248.10Reverse transcriptase Ty1/copia-type domain-contai... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig39989contigH-paniculata_contig39989:36..287 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeFungi
Seed ortholog score75.9
Seed ortholog evalue1e-11
Seed eggNOG ortholog5217.XP_007002288.1
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Reverse transcriptase (RNA-dependent DNA polymerase)
EggNOG OGs38DPC@33154,3NUZ7@4751,3UY7N@5204,3VFTM@5234,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelTremellales
Best eggNOG OGNA|NA|NA
Exons1
Model size252
Cds size252
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930222.7927973-CDS-H-paniculata_contig39989:35..2871622930222.7927973-CDS-H-paniculata_contig39989:35..287Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig39989 36..287 -
1691481197.746766-CDS-H-paniculata_contig39989:35..2871691481197.746766-CDS-H-paniculata_contig39989:35..287Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig39989 36..287 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig39989.10356.1prot_H-paniculata_contig39989.10356.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig39989 36..287 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig39989.10356.1

>prot_H-paniculata_contig39989.10356.1 ID=prot_H-paniculata_contig39989.10356.1|Name=mRNA_H-paniculata_contig39989.10356.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=84bp
YRDVLESKYKSVFLEAMDREMIELKEAGTFVETELTVGRKAIGSKWVLTW
KKDQDGFILKPKARFVCLGNLQVAGVDYDDTFAP
back to top

mRNA from alignment at H-paniculata_contig39989:36..287-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig39989.10356.1 ID=mRNA_H-paniculata_contig39989.10356.1|Name=mRNA_H-paniculata_contig39989.10356.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=252bp|location=Sequence derived from alignment at H-paniculata_contig39989:36..287- (Halopteris paniculata Hal_grac_a_UBK monoicous)
TACCGCGATGTACTAGAGTCTAAGTACAAGAGTGTCTTTCTAGAGGCGAT GGATAGGGAGATGATCGAACTGAAAGAAGCGGGTACGTTCGTAGAAACAG AACTAACCGTAGGACGGAAAGCCATAGGCTCTAAATGGGTACTAACTTGG AAGAAAGACCAGGATGGTTTTATCTTAAAGCCCAAAGCTAGGTTTGTTTG TCTGGGAAACCTCCAAGTTGCAGGGGTAGACTATGACGATACATTCGCCC CC
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig39989:36..287-

>mRNA_H-paniculata_contig39989.10356.1 ID=mRNA_H-paniculata_contig39989.10356.1|Name=mRNA_H-paniculata_contig39989.10356.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=504bp|location=Sequence derived from alignment at H-paniculata_contig39989:36..287- (Halopteris paniculata Hal_grac_a_UBK monoicous)
TACCGCGATGTACTAGAGTCTAAGTACAAGAGTGTCTTTCTAGAGGCGAT
GGATAGGGAGATGATCGAACTGAAAGAAGCGGGTACGTTCGTAGAAACAG
AACTAACCGTAGGACGGAAAGCCATAGGCTCTAAATGGGTACTAACTTGG
AAGAAAGACCAGGATGGTTTTATCTTAAAGCCCAAAGCTAGGTTTGTTTG
TCTGGGAAACCTCCAAGTTGCAGGGGTAGACTATGACGATACATTCGCCC
CCTACCGCGATGTACTAGAGTCTAAGTACAAGAGTGTCTTTCTAGAGGCG
ATGGATAGGGAGATGATCGAACTGAAAGAAGCGGGTACGTTCGTAGAAAC
AGAACTAACCGTAGGACGGAAAGCCATAGGCTCTAAATGGGTACTAACTT
GGAAGAAAGACCAGGATGGTTTTATCTTAAAGCCCAAAGCTAGGTTTGTT
TGTCTGGGAAACCTCCAAGTTGCAGGGGTAGACTATGACGATACATTCGC
CCCC
back to top