prot_H-paniculata_contig386.10093.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_H-paniculata_contig386.10093.1
Unique Name	prot_H-paniculata_contig386.10093.1
Type	polypeptide
Organism	Halopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length	392

Homology

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BLAST of mRNA_H-paniculata_contig386.10093.1 vs. uniprot
Match: D7FPK4_ECTSI (RRM domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FPK4_ECTSI)

HSP 1 Score: 313 bits (801), Expect = 1.700e-100
Identity = 240/422 (56.87%), Postives = 273/422 (64.69%), Query Frame = 0

Query:    1 MNVVQEIKRINEQELAQGLSGKASWHHEYKDSAWVFAGGFSYDLTEGDVLCVMSQWGEIEDINLCRENDTGKLLFFTSCTCPVAYLRLQGFCFIKYEDQKSTILAVDNFNGIQLLGRTIRVDHKHKYSLPKDVREREEKLDEERIARGEAPKGMEAQWRPGVAYEGKQLASAHNFHKGVDVFAAPVKGAGSSDDNEVEDGGFPASGSQDGLSASEKGIRKEAXXXXXXXXXXXXXXXXXXXXXXD--------EDSRDHRNGDRKKRKVHKQDGGDVDNSFAKRRRGGDDND-----NDNRANED------SRVDAARMWERGVRAPAHAGSGDAYASGST-----------SRAEAPP-SLSVGNVLDWRGLGGRGXXXXXXXXXGEGRGRGARXXXXXXXXXXXXXXXAANSFGGMNRRR 391
            MNV+QEIKRINE+EL QG+SGKASWHHEYKDSAWVFAGGF YDLTEGD+LCVMSQWGEIEDINLCRE DTGK                +GFCFIKYE+QKSTILAVDNFNGI LLGRTIRVDHKHKYSLP +VRE+ EK DEER+ARGEAP     QWRPGVAYEGKQLA++HNFHKGVDVFA P +G+GSSDD++   G    S                 XXXXXXXXXXXXXXXXXXXXXX            +D    ++ + + H +D     +   +   GG   +     +D+R  ++      S  DA+  WERG RAP     GD  +SG T           + A APP  LS GNV+DWRGLGGR      XXXX     R     XXXXXXXXXXXXX  NS GGM+RRR
Sbjct:    1 MNVIQEIKRINERELEQGVSGKASWHHEYKDSAWVFAGGFPYDLTEGDILCVMSQWGEIEDINLCREKDTGKS---------------KGFCFIKYENQKSTILAVDNFNGIDLLGRTIRVDHKHKYSLPAEVREKAEKEDEERVARGEAPSEKGPQWRPGVAYEGKQLATSHNFHKGVDVFAKPEQGSGSSDDSDGAGGTLGESAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRHKKDXXXEEKXEGRAHGKDEKTRSSEHPRAGNGGRGEERVGGRHDHRRGKEPPTGRSSGADASGAWERGARAP-----GDGPSSGGTPFSSSSQPSGRAPALAPPVPLSSGNVMDWRGLGGRAAGGRGXXXXXXXXXREGAGRXXXXXXXXXXXXXXMNSMGGMDRRR 402

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BLAST of mRNA_H-paniculata_contig386.10093.1 vs. uniprot
Match: A0A835YJH4_9STRA (RRM domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YJH4_9STRA)

HSP 1 Score: 215 bits (548), Expect = 1.630e-65
Identity = 107/189 (56.61%), Postives = 136/189 (71.96%), Query Frame = 0

Query:    1 MNVVQEIKRINEQELAQGLSGKASWHHEYKDSAWVFAGGFSYDLTEGDVLCVMSQWGEIEDINLCRENDTGKLLFFTSCTCPVAYLRLQGFCFIKYEDQKSTILAVDNFNGIQLLGRTIRVDHKHKYSLPKDVREREEKLDE---ERIARGEAPKGMEAQWRPGVAYEGKQLASAHNFHKGVDVFAAPV 186
            MNVV+EI++INE+EL +GL+G ASWHH+YKDSAWVF GG  Y+LTEGDV+CV+SQWGEIEDINL R+ DTGK                +GF F+KYEDQ+STILAVDN NG QLLGR +RVDH  KY LPK+++++E+   E   E+   G  P+   A W+PG AYEGK++  +H   +GVDV+A  V
Sbjct:    1 MNVVREIQKINERELKEGLTGSASWHHKYKDSAWVFVGGLGYELTEGDVICVLSQWGEIEDINLVRDQDTGKS---------------KGFAFVKYEDQRSTILAVDNMNGAQLLGRPLRVDHVEKYRLPKELQDKEDAQQEGGGEQGGEGGEPRSAAA-WKPGHAYEGKEIRGSHTLAQGVDVWAPQV 173

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BLAST of mRNA_H-paniculata_contig386.10093.1 vs. uniprot
Match: A0A7S2RL84_9STRA (Hypothetical protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RL84_9STRA)

HSP 1 Score: 208 bits (529), Expect = 1.410e-62
Identity = 112/201 (55.72%), Postives = 138/201 (68.66%), Query Frame = 0

Query:    1 MNVVQEIKRINEQELAQGLSGKA-SWHHEYKDSAWVFAGGFSYDLTEGDVLCVMSQWGEIEDINLCRENDTGKLLFFTSCTCPVAYLRLQGFCFIKYEDQKSTILAVDNFNGIQLLGRTIRVDHKHKYSLPKDVREREEKLDEERIARGEAPKGME-AQWRPGVAYEGKQLASAHNFHKGVDVFAAPVKGAGSSDDNEVED 199
            MNV+QEIKRINE+EL++G++G A SWH +Y+DSA+VF GG  YDL EGDVLCV SQWGE+EDINL R+  TGK                +GF FIKYEDQ+ST+LAVDNFNG++LLGR IRVDH  KY LP  +RE+EE  +E     G    G E +++RPG AYEG +LA+  N HKGVD++  P      SDD   ED
Sbjct:    2 MNVIQEIKRINEEELSRGVAGGAGSWHAQYRDSAYVFVGGLPYDLVEGDVLCVFSQWGEVEDINLVRDEKTGKS---------------KGFAFIKYEDQRSTVLAVDNFNGVELLGRLIRVDHVAKYKLPSHLREKEEAEEENSGHYGPEGDGEEESKYRPGHAYEGAELANKFNIHKGVDLYGGPDD----SDDGSGED 183

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BLAST of mRNA_H-paniculata_contig386.10093.1 vs. uniprot
Match: A0A4D9D1V2_9STRA (RRM domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D1V2_9STRA)

HSP 1 Score: 207 bits (528), Expect = 1.100e-59
Identity = 108/210 (51.43%), Postives = 145/210 (69.05%), Query Frame = 0

Query:    1 MNVVQEIKRINEQELAQGLSG-KASWHHEYKDSAWVFAGGFSYDLTEGDVLCVMSQWGEIEDINLCRENDTGKLLFFTSCTCPVAYLRLQGFCFIKYEDQKSTILAVDNFNGIQLLGRTIRVDHKHKYSLPKDVREREEKLDEERIARGEAPKGMEAQWRPGVAYEGKQLASAHNFHKGVDVFAAPVKGAGSSDDNEVEDGGFPASGSQD 209
            MNVV+EI+R+NE+EL +G +G + SWH +YKDSAWVF G     L+EGDVLCVMSQWGEIED++L R+  TGK                +GF F+KYEDQ+STILAVDN NGI+LL RT+RVDHK KY+LPK+V E+ E+ ++ R+  GE   G   +W+PG AYEGK+L   H+  KGVD+FA   +G     + + E+ G  +SG+++
Sbjct:    1 MNVVREIQRLNEKELQRGTAGMEGSWHGQYKDSAWVFVGSLPLQLSEGDVLCVMSQWGEIEDLHLVRDKGTGKS---------------KGFAFLKYEDQRSTILAVDNMNGIKLLERTLRVDHKEKYALPKEVLEKAEEKEKARLEAGEDGGGGGPRWKPGHAYEGKELVEGHDLSKGVDLFAPVQEG-----EVDAEEDGLVSSGNEE 190

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BLAST of mRNA_H-paniculata_contig386.10093.1 vs. uniprot
Match: A0A485KUA3_9STRA (Aste57867_11943 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485KUA3_9STRA)

HSP 1 Score: 203 bits (517), Expect = 1.310e-59
Identity = 101/182 (55.49%), Postives = 129/182 (70.88%), Query Frame = 0

Query:    1 MNVVQEIKRINEQELAQGLSGKASWHHEYKDSAWVFAGGFSYDLTEGDVLCVMSQWGEIEDINLCRENDTGKLLFFTSCTCPVAYLRLQGFCFIKYEDQKSTILAVDNFNGIQLLGRTIRVDHKHKYSLPKDVREREEKLDEERIARGEAPKGMEAQWRPGVAYEGKQLASAHNFHKGVDVF 182
            MNV++EI+R+NEQEL QG+  + SWHH Y+DSAWV+ GG SY+LTEGD+LCV SQ GEIEDINL R+ D+GK +               GFCFIKYE   ST+LAVDNFNG  LL R +RVDH HKY LPK++R++E+ +DE         +  E + RPG AYEGK+LA+ ++ H+GVDVF
Sbjct:    1 MNVIKEIQRLNEQELEQGVGYEGSWHHIYRDSAWVYIGGLSYELTEGDILCVFSQVGEIEDINLVRDKDSGKSM---------------GFCFIKYEHHMSTVLAVDNFNGSSLLERMLRVDHVHKYKLPKELRDKEDNVDEP------VDENDEMRGRPGHAYEGKELANKYDIHEGVDVF 161

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BLAST of mRNA_H-paniculata_contig386.10093.1 vs. uniprot
Match: A0A6G0X0J2_9STRA (RRM domain-containing protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0X0J2_9STRA)

HSP 1 Score: 200 bits (509), Expect = 1.990e-58
Identity = 102/182 (56.04%), Postives = 131/182 (71.98%), Query Frame = 0

Query:    1 MNVVQEIKRINEQELAQGLSGKASWHHEYKDSAWVFAGGFSYDLTEGDVLCVMSQWGEIEDINLCRENDTGKLLFFTSCTCPVAYLRLQGFCFIKYEDQKSTILAVDNFNGIQLLGRTIRVDHKHKYSLPKDVREREEKLDEERIARGEAPKGMEAQWRPGVAYEGKQLASAHNFHKGVDVF 182
            MNV++EI+R+NEQEL QG+S + SWHH Y++SAWV+ G  SY+LTEGD+LCV SQ GEIEDINL R+ DTGK L               GFCFIKYE+  ST+LAVDNFNG  LL R +RVDH HKY LPK++R++E   D+E +   +A    E + +PG AYEGK+LA+ ++ H+GVDVF
Sbjct:    1 MNVIKEIQRLNEQELEQGVSYEGSWHHIYRESAWVYVGSLSYELTEGDILCVFSQVGEIEDINLVRDKDTGKSL---------------GFCFIKYENHLSTVLAVDNFNGAMLLERMLRVDHVHKYKLPKELRDKE---DDEGVLDDDA----ELRGQPGHAYEGKELANKYDIHQGVDVF 160

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BLAST of mRNA_H-paniculata_contig386.10093.1 vs. uniprot
Match: W4H400_9STRA (RRM domain-containing protein n=3 Tax=Aphanomyces TaxID=100860 RepID=W4H400_9STRA)

HSP 1 Score: 197 bits (500), Expect = 4.240e-57
Identity = 101/182 (55.49%), Postives = 126/182 (69.23%), Query Frame = 0

Query:    1 MNVVQEIKRINEQELAQGLSGKASWHHEYKDSAWVFAGGFSYDLTEGDVLCVMSQWGEIEDINLCRENDTGKLLFFTSCTCPVAYLRLQGFCFIKYEDQKSTILAVDNFNGIQLLGRTIRVDHKHKYSLPKDVREREEKLDEERIARGEAPKGMEAQWRPGVAYEGKQLASAHNFHKGVDVF 182
            MNV++EI+R+NEQEL QG+S + SWHH Y+DSAWV+ GG SYDLTEGD+LCV SQ GEIEDINL R+ DTGK +               GF FIKYE+  ST+LAVDNFNG  LL R +RVDH HKY LPK++R++EE +         A    E + +PG AYEGK+L +  + H+GVDVF
Sbjct:    1 MNVIKEIQRLNEQELEQGVSIEGSWHHIYRDSAWVYVGGLSYDLTEGDILCVFSQVGEIEDINLVRDKDTGKSM---------------GFSFIKYENHLSTVLAVDNFNGSTLLERLLRVDHVHKYKLPKELRDKEENV--------VADHDDELRGKPGHAYEGKELENKFDIHQGVDVF 159

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BLAST of mRNA_H-paniculata_contig386.10093.1 vs. uniprot
Match: A0A024UQN5_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024UQN5_9STRA)

HSP 1 Score: 196 bits (499), Expect = 1.060e-55
Identity = 100/182 (54.95%), Postives = 125/182 (68.68%), Query Frame = 0

Query:    1 MNVVQEIKRINEQELAQGLSGKASWHHEYKDSAWVFAGGFSYDLTEGDVLCVMSQWGEIEDINLCRENDTGKLLFFTSCTCPVAYLRLQGFCFIKYEDQKSTILAVDNFNGIQLLGRTIRVDHKHKYSLPKDVREREEKLDEERIARGEAPKGMEAQWRPGVAYEGKQLASAHNFHKGVDVF 182
            MNV++EI+R+NEQEL QG+  + SWHH Y+DSAWV+ GG SY+LTEGD+LCV SQ GEIEDINL R+ DTGK +               GF FIKYE+  ST+LAVDNFNG  LL R +RVDH HKY LPK++R++EE          E     E + +PG AYEGK+LA+  + H+GVDVF
Sbjct:    1 MNVIKEIQRLNEQELEQGVGIEGSWHHIYRDSAWVYVGGLSYELTEGDILCVFSQVGEIEDINLVRDKDTGKSM---------------GFSFIKYENHLSTVLAVDNFNGSTLLERMLRVDHVHKYKLPKELRDKEE---------NEVADDEELRGKPGHAYEGKELANKFDIHQGVDVF 158

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BLAST of mRNA_H-paniculata_contig386.10093.1 vs. uniprot
Match: A0A1V9ZVW6_9STRA (U2 snRNP component IST3 n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9ZVW6_9STRA)

HSP 1 Score: 189 bits (480), Expect = 1.290e-55
Identity = 96/183 (52.46%), Postives = 126/183 (68.85%), Query Frame = 0

Query:    1 MNVVQEIKRINEQELAQGLSGKASWHHEYKDSAWVFAGGFSYDLTEGDVLCVMSQWGEIEDINLCRENDTGKLLFFTSCTCPVAYLRLQGFCFIKYEDQKSTILAVDNFNGIQLLGRTIRVDHKHKYSLPKDVREREEKLD--EERIARGEAPKGMEAQWRPGVAYEGKQLASAHNFHKGVDV 181
            MNVV+EI+R+N+QEL QG+  + SWH+ Y+DSAW++ G  SY+L+EGDVLCV SQ+GEIEDINL R+ +TGK +               GF FIKYED +ST+LAVDNFNG  LL RT+RVDH HKY LPK++R++E+  D  EE   RG+          PG AY+GK L + ++ H+GVD 
Sbjct:    1 MNVVKEIERLNQQELDQGIGYEGSWHYIYRDSAWIYVGSLSYELSEGDVLCVFSQFGEIEDINLVRDKETGKSM---------------GFAFIKYEDHRSTVLAVDNFNGSTLLERTLRVDHVHKYKLPKEIRDKEDAQDFEEEEKLRGQ----------PGHAYKGKDLENKYDIHQGVDT 158

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BLAST of mRNA_H-paniculata_contig386.10093.1 vs. uniprot
Match: T0R8P5_SAPDV (RRM domain-containing protein n=2 Tax=Saprolegnia TaxID=4769 RepID=T0R8P5_SAPDV)

HSP 1 Score: 192 bits (489), Expect = 2.330e-55
Identity = 99/182 (54.40%), Postives = 130/182 (71.43%), Query Frame = 0

Query:    1 MNVVQEIKRINEQELAQGLSGKASWHHEYKDSAWVFAGGFSYDLTEGDVLCVMSQWGEIEDINLCRENDTGKLLFFTSCTCPVAYLRLQGFCFIKYEDQKSTILAVDNFNGIQLLGRTIRVDHKHKYSLPKDVREREEKLDEERIARGEAPKGMEAQWRPGVAYEGKQLASAHNFHKGVDVF 182
            MNV++EI+R+N+QEL QG+S + SWHH Y++SAWV+ GG SY+LTEGDVLCV SQ GEIEDINL R+ DTGK +               GF F+KYED +ST+LAVDNFNG  LL R +RVDH HKY LPK++R++E+ +D++  A  +A   +  Q   G AY+ K+LA+  + HKGVDVF
Sbjct:    1 MNVIKEIERLNQQELDQGVSYEGSWHHIYRESAWVYVGGLSYELTEGDVLCVFSQVGEIEDINLVRDKDTGKSM---------------GFAFLKYEDHRSTVLAVDNFNGSSLLERLLRVDHVHKYKLPKELRDKEDGVDDD-DALDDAIDELRGQ--AGHAYKDKELATKFDIHKGVDVF 164

The following BLAST results are available for this feature:

BLAST of mRNA_H-paniculata_contig386.10093.1 vs. uniprot

BLAST of mRNA_H-paniculata_contig386.10093.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
D7FPK4_ECTSI	1.700e-100	56.87	RRM domain-containing protein n=2 Tax=Ectocarpus T...	[more]
A0A835YJH4_9STRA	1.630e-65	56.61	RRM domain-containing protein n=1 Tax=Tribonema mi...	[more]
A0A7S2RL84_9STRA	1.410e-62	55.72	Hypothetical protein (Fragment) n=1 Tax=Rhizochrom...	[more]
A0A4D9D1V2_9STRA	1.100e-59	51.43	RRM domain-containing protein n=1 Tax=Nannochlorop...	[more]
A0A485KUA3_9STRA	1.310e-59	55.49	Aste57867_11943 protein n=1 Tax=Aphanomyces stella...	[more]
A0A6G0X0J2_9STRA	1.990e-58	56.04	RRM domain-containing protein n=1 Tax=Aphanomyces ...	[more]
W4H400_9STRA	4.240e-57	55.49	RRM domain-containing protein n=3 Tax=Aphanomyces ...	[more]
A0A024UQN5_9STRA	1.060e-55	54.95	Uncharacterized protein n=1 Tax=Aphanomyces invada...	[more]
A0A1V9ZVW6_9STRA	1.290e-55	52.46	U2 snRNP component IST3 n=1 Tax=Thraustotheca clav...	[more]
T0R8P5_SAPDV	2.330e-55	54.40	RRM domain-containing protein n=2 Tax=Saprolegnia ...	[more]

Pages

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 215..235
None	No IPR available	PANTHER	PTHR45880	FAMILY NOT NAMED	coord: 1..294
None	No IPR available	PANTHER	PTHR45880:SF1	RNA-BINDING MOTIF PROTEIN, X-LINKED 2	coord: 1..294
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 34..122 e-value: 5.8E-6 score: 35.8
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 35..120 e-value: 1.7E-6 score: 27.8
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 33..126 score: 12.134
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 23..149 e-value: 9.2E-18 score: 66.5
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 23..125

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
H-paniculata_contig386	contig	H-paniculata_contig386:24188..26266 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_H-paniculata_contig386.10093.1	mRNA_H-paniculata_contig386.10093.1	Halopteris paniculata Hal_grac_a_UBK monoicous	mRNA	H-paniculata_contig386 24188..26266 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_H-paniculata_contig386.10093.1 ID=prot_H-paniculata_contig386.10093.1|Name=mRNA_H-paniculata_contig386.10093.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=392bp
MNVVQEIKRINEQELAQGLSGKASWHHEYKDSAWVFAGGFSYDLTEGDVL
CVMSQWGEIEDINLCRENDTGKLLFFTSCTCPVAYLRLQGFCFIKYEDQK
STILAVDNFNGIQLLGRTIRVDHKHKYSLPKDVREREEKLDEERIARGEA
PKGMEAQWRPGVAYEGKQLASAHNFHKGVDVFAAPVKGAGSSDDNEVEDG
GFPASGSQDGLSASEKGIRKEAKKARKQARKEKRKHKKPKDKKKDEDSRD
HRNGDRKKRKVHKQDGGDVDNSFAKRRRGGDDNDNDNRANEDSRVDAARM
WERGVRAPAHAGSGDAYASGSTSRAEAPPSLSVGNVLDWRGLGGRGGGRG
GRGGRGEGRGRGARDGGRGRGGGLDERGGAANSFGGMNRRR*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR000504	RRM_dom
IPR012677	Nucleotide-bd_a/b_plait_sf
IPR035979	RBD_domain_sf