mRNA_H-paniculata_contig386.10093.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig386.10093.1
Unique NamemRNA_H-paniculata_contig386.10093.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig386.10093.1 vs. uniprot
Match: D7FPK4_ECTSI (RRM domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FPK4_ECTSI)

HSP 1 Score: 313 bits (801), Expect = 1.700e-100
Identity = 240/422 (56.87%), Postives = 273/422 (64.69%), Query Frame = 1 
Query:    1 MNVVQEIKRINEQELAQGLSGKASWHHEYKDSAWVFAGGFSYDLTEGDVLCVMSQWGEIEDINLCRENDTGKLLFFTSCTCPVAYLRLQGFCFIKYEDQKSTILAVDNFNGIQLLGRTIRVDHKHKYSLPKDVREREEKLDEERIARGEAPKGMEAQWRPGVAYEGKQLASAHNFHKGVDVFAAPVKGAGSSDDNEVEDGGFPASGSQDGLSASEKGIRKEAXXXXXXXXXXXXXXXXXXXXXXD--------EDSRDHRNGDRKKRKVHKQDGGDVDNSFAKRRRGGDDND-----NDNRANED------SRVDAARMWERGVRAPAHAGSGDAYASGST-----------SRAEAPP-SLSVGNVLDWRGLGGRGXXXXXXXXXGEGRGRGARXXXXXXXXXXXXXXXAANSFGGMNRRR 1173
            MNV+QEIKRINE+EL QG+SGKASWHHEYKDSAWVFAGGF YDLTEGD+LCVMSQWGEIEDINLCRE DTGK                +GFCFIKYE+QKSTILAVDNFNGI LLGRTIRVDHKHKYSLP +VRE+ EK DEER+ARGEAP     QWRPGVAYEGKQLA++HNFHKGVDVFA P +G+GSSDD++   G    S                 XXXXXXXXXXXXXXXXXXXXXX            +D    ++ + + H +D     +   +   GG   +     +D+R  ++      S  DA+  WERG RAP     GD  +SG T           + A APP  LS GNV+DWRGLGGR      XXXX     R     XXXXXXXXXXXXX  NS GGM+RRR
Sbjct:    1 MNVIQEIKRINERELEQGVSGKASWHHEYKDSAWVFAGGFPYDLTEGDILCVMSQWGEIEDINLCREKDTGKS---------------KGFCFIKYENQKSTILAVDNFNGIDLLGRTIRVDHKHKYSLPAEVREKAEKEDEERVARGEAPSEKGPQWRPGVAYEGKQLATSHNFHKGVDVFAKPEQGSGSSDDSDGAGGTLGESAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRHKKDXXXEEKXEGRAHGKDEKTRSSEHPRAGNGGRGEERVGGRHDHRRGKEPPTGRSSGADASGAWERGARAP-----GDGPSSGGTPFSSSSQPSGRAPALAPPVPLSSGNVMDWRGLGGRAAGGRGXXXXXXXXXREGAGRXXXXXXXXXXXXXXMNSMGGMDRRR 402
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BLAST of mRNA_H-paniculata_contig386.10093.1 vs. uniprot
Match: A0A835YJH4_9STRA (RRM domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YJH4_9STRA)

HSP 1 Score: 215 bits (548), Expect = 1.630e-65
Identity = 107/189 (56.61%), Postives = 136/189 (71.96%), Query Frame = 1 
Query:    1 MNVVQEIKRINEQELAQGLSGKASWHHEYKDSAWVFAGGFSYDLTEGDVLCVMSQWGEIEDINLCRENDTGKLLFFTSCTCPVAYLRLQGFCFIKYEDQKSTILAVDNFNGIQLLGRTIRVDHKHKYSLPKDVREREEKLDE---ERIARGEAPKGMEAQWRPGVAYEGKQLASAHNFHKGVDVFAAPV 558
            MNVV+EI++INE+EL +GL+G ASWHH+YKDSAWVF GG  Y+LTEGDV+CV+SQWGEIEDINL R+ DTGK                +GF F+KYEDQ+STILAVDN NG QLLGR +RVDH  KY LPK+++++E+   E   E+   G  P+   A W+PG AYEGK++  +H   +GVDV+A  V
Sbjct:    1 MNVVREIQKINERELKEGLTGSASWHHKYKDSAWVFVGGLGYELTEGDVICVLSQWGEIEDINLVRDQDTGKS---------------KGFAFVKYEDQRSTILAVDNMNGAQLLGRPLRVDHVEKYRLPKELQDKEDAQQEGGGEQGGEGGEPRSAAA-WKPGHAYEGKEIRGSHTLAQGVDVWAPQV 173
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BLAST of mRNA_H-paniculata_contig386.10093.1 vs. uniprot
Match: A0A7S2RL84_9STRA (Hypothetical protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RL84_9STRA)

HSP 1 Score: 208 bits (529), Expect = 1.410e-62
Identity = 112/201 (55.72%), Postives = 138/201 (68.66%), Query Frame = 1 
Query:    1 MNVVQEIKRINEQELAQGLSGKA-SWHHEYKDSAWVFAGGFSYDLTEGDVLCVMSQWGEIEDINLCRENDTGKLLFFTSCTCPVAYLRLQGFCFIKYEDQKSTILAVDNFNGIQLLGRTIRVDHKHKYSLPKDVREREEKLDEERIARGEAPKGME-AQWRPGVAYEGKQLASAHNFHKGVDVFAAPVKGAGSSDDNEVED 597
            MNV+QEIKRINE+EL++G++G A SWH +Y+DSA+VF GG  YDL EGDVLCV SQWGE+EDINL R+  TGK                +GF FIKYEDQ+ST+LAVDNFNG++LLGR IRVDH  KY LP  +RE+EE  +E     G    G E +++RPG AYEG +LA+  N HKGVD++  P      SDD   ED
Sbjct:    2 MNVIQEIKRINEEELSRGVAGGAGSWHAQYRDSAYVFVGGLPYDLVEGDVLCVFSQWGEVEDINLVRDEKTGKS---------------KGFAFIKYEDQRSTVLAVDNFNGVELLGRLIRVDHVAKYKLPSHLREKEEAEEENSGHYGPEGDGEEESKYRPGHAYEGAELANKFNIHKGVDLYGGPDD----SDDGSGED 183
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BLAST of mRNA_H-paniculata_contig386.10093.1 vs. uniprot
Match: A0A4D9D1V2_9STRA (RRM domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D1V2_9STRA)

HSP 1 Score: 207 bits (528), Expect = 1.100e-59
Identity = 108/210 (51.43%), Postives = 145/210 (69.05%), Query Frame = 1 
Query:    1 MNVVQEIKRINEQELAQGLSG-KASWHHEYKDSAWVFAGGFSYDLTEGDVLCVMSQWGEIEDINLCRENDTGKLLFFTSCTCPVAYLRLQGFCFIKYEDQKSTILAVDNFNGIQLLGRTIRVDHKHKYSLPKDVREREEKLDEERIARGEAPKGMEAQWRPGVAYEGKQLASAHNFHKGVDVFAAPVKGAGSSDDNEVEDGGFPASGSQD 627
            MNVV+EI+R+NE+EL +G +G + SWH +YKDSAWVF G     L+EGDVLCVMSQWGEIED++L R+  TGK                +GF F+KYEDQ+STILAVDN NGI+LL RT+RVDHK KY+LPK+V E+ E+ ++ R+  GE   G   +W+PG AYEGK+L   H+  KGVD+FA   +G     + + E+ G  +SG+++
Sbjct:    1 MNVVREIQRLNEKELQRGTAGMEGSWHGQYKDSAWVFVGSLPLQLSEGDVLCVMSQWGEIEDLHLVRDKGTGKS---------------KGFAFLKYEDQRSTILAVDNMNGIKLLERTLRVDHKEKYALPKEVLEKAEEKEKARLEAGEDGGGGGPRWKPGHAYEGKELVEGHDLSKGVDLFAPVQEG-----EVDAEEDGLVSSGNEE 190
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BLAST of mRNA_H-paniculata_contig386.10093.1 vs. uniprot
Match: A0A485KUA3_9STRA (Aste57867_11943 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485KUA3_9STRA)

HSP 1 Score: 203 bits (517), Expect = 1.310e-59
Identity = 101/182 (55.49%), Postives = 129/182 (70.88%), Query Frame = 1 
Query:    1 MNVVQEIKRINEQELAQGLSGKASWHHEYKDSAWVFAGGFSYDLTEGDVLCVMSQWGEIEDINLCRENDTGKLLFFTSCTCPVAYLRLQGFCFIKYEDQKSTILAVDNFNGIQLLGRTIRVDHKHKYSLPKDVREREEKLDEERIARGEAPKGMEAQWRPGVAYEGKQLASAHNFHKGVDVF 546
            MNV++EI+R+NEQEL QG+  + SWHH Y+DSAWV+ GG SY+LTEGD+LCV SQ GEIEDINL R+ D+GK +               GFCFIKYE   ST+LAVDNFNG  LL R +RVDH HKY LPK++R++E+ +DE         +  E + RPG AYEGK+LA+ ++ H+GVDVF
Sbjct:    1 MNVIKEIQRLNEQELEQGVGYEGSWHHIYRDSAWVYIGGLSYELTEGDILCVFSQVGEIEDINLVRDKDSGKSM---------------GFCFIKYEHHMSTVLAVDNFNGSSLLERMLRVDHVHKYKLPKELRDKEDNVDEP------VDENDEMRGRPGHAYEGKELANKYDIHEGVDVF 161
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BLAST of mRNA_H-paniculata_contig386.10093.1 vs. uniprot
Match: A0A6G0X0J2_9STRA (RRM domain-containing protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0X0J2_9STRA)

HSP 1 Score: 200 bits (509), Expect = 1.990e-58
Identity = 102/182 (56.04%), Postives = 131/182 (71.98%), Query Frame = 1 
Query:    1 MNVVQEIKRINEQELAQGLSGKASWHHEYKDSAWVFAGGFSYDLTEGDVLCVMSQWGEIEDINLCRENDTGKLLFFTSCTCPVAYLRLQGFCFIKYEDQKSTILAVDNFNGIQLLGRTIRVDHKHKYSLPKDVREREEKLDEERIARGEAPKGMEAQWRPGVAYEGKQLASAHNFHKGVDVF 546
            MNV++EI+R+NEQEL QG+S + SWHH Y++SAWV+ G  SY+LTEGD+LCV SQ GEIEDINL R+ DTGK L               GFCFIKYE+  ST+LAVDNFNG  LL R +RVDH HKY LPK++R++E   D+E +   +A    E + +PG AYEGK+LA+ ++ H+GVDVF
Sbjct:    1 MNVIKEIQRLNEQELEQGVSYEGSWHHIYRESAWVYVGSLSYELTEGDILCVFSQVGEIEDINLVRDKDTGKSL---------------GFCFIKYENHLSTVLAVDNFNGAMLLERMLRVDHVHKYKLPKELRDKE---DDEGVLDDDA----ELRGQPGHAYEGKELANKYDIHQGVDVF 160
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BLAST of mRNA_H-paniculata_contig386.10093.1 vs. uniprot
Match: W4H400_9STRA (RRM domain-containing protein n=3 Tax=Aphanomyces TaxID=100860 RepID=W4H400_9STRA)

HSP 1 Score: 197 bits (500), Expect = 4.240e-57
Identity = 101/182 (55.49%), Postives = 126/182 (69.23%), Query Frame = 1 
Query:    1 MNVVQEIKRINEQELAQGLSGKASWHHEYKDSAWVFAGGFSYDLTEGDVLCVMSQWGEIEDINLCRENDTGKLLFFTSCTCPVAYLRLQGFCFIKYEDQKSTILAVDNFNGIQLLGRTIRVDHKHKYSLPKDVREREEKLDEERIARGEAPKGMEAQWRPGVAYEGKQLASAHNFHKGVDVF 546
            MNV++EI+R+NEQEL QG+S + SWHH Y+DSAWV+ GG SYDLTEGD+LCV SQ GEIEDINL R+ DTGK +               GF FIKYE+  ST+LAVDNFNG  LL R +RVDH HKY LPK++R++EE +         A    E + +PG AYEGK+L +  + H+GVDVF
Sbjct:    1 MNVIKEIQRLNEQELEQGVSIEGSWHHIYRDSAWVYVGGLSYDLTEGDILCVFSQVGEIEDINLVRDKDTGKSM---------------GFSFIKYENHLSTVLAVDNFNGSTLLERLLRVDHVHKYKLPKELRDKEENV--------VADHDDELRGKPGHAYEGKELENKFDIHQGVDVF 159
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BLAST of mRNA_H-paniculata_contig386.10093.1 vs. uniprot
Match: A0A024UQN5_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024UQN5_9STRA)

HSP 1 Score: 196 bits (499), Expect = 1.060e-55
Identity = 100/182 (54.95%), Postives = 125/182 (68.68%), Query Frame = 1 
Query:    1 MNVVQEIKRINEQELAQGLSGKASWHHEYKDSAWVFAGGFSYDLTEGDVLCVMSQWGEIEDINLCRENDTGKLLFFTSCTCPVAYLRLQGFCFIKYEDQKSTILAVDNFNGIQLLGRTIRVDHKHKYSLPKDVREREEKLDEERIARGEAPKGMEAQWRPGVAYEGKQLASAHNFHKGVDVF 546
            MNV++EI+R+NEQEL QG+  + SWHH Y+DSAWV+ GG SY+LTEGD+LCV SQ GEIEDINL R+ DTGK +               GF FIKYE+  ST+LAVDNFNG  LL R +RVDH HKY LPK++R++EE          E     E + +PG AYEGK+LA+  + H+GVDVF
Sbjct:    1 MNVIKEIQRLNEQELEQGVGIEGSWHHIYRDSAWVYVGGLSYELTEGDILCVFSQVGEIEDINLVRDKDTGKSM---------------GFSFIKYENHLSTVLAVDNFNGSTLLERMLRVDHVHKYKLPKELRDKEE---------NEVADDEELRGKPGHAYEGKELANKFDIHQGVDVF 158
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BLAST of mRNA_H-paniculata_contig386.10093.1 vs. uniprot
Match: A0A1V9ZVW6_9STRA (U2 snRNP component IST3 n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9ZVW6_9STRA)

HSP 1 Score: 189 bits (480), Expect = 1.290e-55
Identity = 96/183 (52.46%), Postives = 126/183 (68.85%), Query Frame = 1 
Query:    1 MNVVQEIKRINEQELAQGLSGKASWHHEYKDSAWVFAGGFSYDLTEGDVLCVMSQWGEIEDINLCRENDTGKLLFFTSCTCPVAYLRLQGFCFIKYEDQKSTILAVDNFNGIQLLGRTIRVDHKHKYSLPKDVREREEKLD--EERIARGEAPKGMEAQWRPGVAYEGKQLASAHNFHKGVDV 543
            MNVV+EI+R+N+QEL QG+  + SWH+ Y+DSAW++ G  SY+L+EGDVLCV SQ+GEIEDINL R+ +TGK +               GF FIKYED +ST+LAVDNFNG  LL RT+RVDH HKY LPK++R++E+  D  EE   RG+          PG AY+GK L + ++ H+GVD 
Sbjct:    1 MNVVKEIERLNQQELDQGIGYEGSWHYIYRDSAWIYVGSLSYELSEGDVLCVFSQFGEIEDINLVRDKETGKSM---------------GFAFIKYEDHRSTVLAVDNFNGSTLLERTLRVDHVHKYKLPKEIRDKEDAQDFEEEEKLRGQ----------PGHAYKGKDLENKYDIHQGVDT 158
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BLAST of mRNA_H-paniculata_contig386.10093.1 vs. uniprot
Match: T0R8P5_SAPDV (RRM domain-containing protein n=2 Tax=Saprolegnia TaxID=4769 RepID=T0R8P5_SAPDV)

HSP 1 Score: 192 bits (489), Expect = 2.330e-55
Identity = 99/182 (54.40%), Postives = 130/182 (71.43%), Query Frame = 1 
Query:    1 MNVVQEIKRINEQELAQGLSGKASWHHEYKDSAWVFAGGFSYDLTEGDVLCVMSQWGEIEDINLCRENDTGKLLFFTSCTCPVAYLRLQGFCFIKYEDQKSTILAVDNFNGIQLLGRTIRVDHKHKYSLPKDVREREEKLDEERIARGEAPKGMEAQWRPGVAYEGKQLASAHNFHKGVDVF 546
            MNV++EI+R+N+QEL QG+S + SWHH Y++SAWV+ GG SY+LTEGDVLCV SQ GEIEDINL R+ DTGK +               GF F+KYED +ST+LAVDNFNG  LL R +RVDH HKY LPK++R++E+ +D++  A  +A   +  Q   G AY+ K+LA+  + HKGVDVF
Sbjct:    1 MNVIKEIERLNQQELDQGVSYEGSWHHIYRESAWVYVGGLSYELTEGDVLCVFSQVGEIEDINLVRDKDTGKSM---------------GFAFLKYEDHRSTVLAVDNFNGSSLLERLLRVDHVHKYKLPKELRDKEDGVDDD-DALDDAIDELRGQ--AGHAYKDKELATKFDIHKGVDVF 164
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig386.10093.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FPK4_ECTSI1.700e-10056.87RRM domain-containing protein n=2 Tax=Ectocarpus T... [more]
A0A835YJH4_9STRA1.630e-6556.61RRM domain-containing protein n=1 Tax=Tribonema mi... [more]
A0A7S2RL84_9STRA1.410e-6255.72Hypothetical protein (Fragment) n=1 Tax=Rhizochrom... [more]
A0A4D9D1V2_9STRA1.100e-5951.43RRM domain-containing protein n=1 Tax=Nannochlorop... [more]
A0A485KUA3_9STRA1.310e-5955.49Aste57867_11943 protein n=1 Tax=Aphanomyces stella... [more]
A0A6G0X0J2_9STRA1.990e-5856.04RRM domain-containing protein n=1 Tax=Aphanomyces ... [more]
W4H400_9STRA4.240e-5755.49RRM domain-containing protein n=3 Tax=Aphanomyces ... [more]
A0A024UQN5_9STRA1.060e-5554.95Uncharacterized protein n=1 Tax=Aphanomyces invada... [more]
A0A1V9ZVW6_9STRA1.290e-5552.46U2 snRNP component IST3 n=1 Tax=Thraustotheca clav... [more]
T0R8P5_SAPDV2.330e-5554.40RRM domain-containing protein n=2 Tax=Saprolegnia ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig386contigH-paniculata_contig386:24188..26266 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score321.2
Seed ortholog evalue6.5e-85
Seed eggNOG ortholog2880.D7FPK4
Preferred nameRBMX2
KEGG koko:K07919,ko:K13107,ko:K14807
Hectar predicted targeting categoryother localisation
GOsGO:0000245,GO:0000349,GO:0000375,GO:0000377,GO:0000393,GO:0000398,GO:0003674,GO:0003676,GO:0003677,GO:0003723,GO:0003729,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005681,GO:0005686,GO:0005737,GO:0005829,GO:0006139,GO:0006351,GO:0006355,GO:0006366,GO:0006396,GO:0006397,GO:0006401,GO:0006403,GO:0006405,GO:0006406,GO:0006417,GO:0006611,GO:0006725,GO:0006807,GO:0006810,GO:0006886,GO:0006913,GO:0007623,GO:0008104,GO:0008150,GO:0008152,GO:0008380,GO:0009056,GO:0009057,GO:0009058,GO:0009059,GO:0009299,GO:0009889,GO:0009891,GO:0009893,GO:0009894,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0010557,GO:0010604,GO:0010608,GO:0010628,GO:0010638,GO:0015031,GO:0015833,GO:0015931,GO:0016043,GO:0016070,GO:0016071,GO:0016604,GO:0016607,GO:0018130,GO:0019219,GO:0019222,GO:0019438,GO:0019439,GO:0022607,GO:0022613,GO:0022618,GO:0030532,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031329,GO:0031503,GO:0031974,GO:0031981,GO:0032204,GO:0032206,GO:0032268,GO:0032270,GO:0032501,GO:0032774,GO:0032991,GO:0033036,GO:0033043,GO:0033044,GO:0034248,GO:0034250,GO:0034613,GO:0034622,GO:0034641,GO:0034645,GO:0034654,GO:0034655,GO:0042162,GO:0042752,GO:0042789,GO:0042886,GO:0043085,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043487,GO:0043488,GO:0043565,GO:0043933,GO:0044085,GO:0044093,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044260,GO:0044265,GO:0044270,GO:0044271,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044451,GO:0044464,GO:0045184,GO:0045727,GO:0045893,GO:0045935,GO:0046483,GO:0046700,GO:0046907,GO:0048511,GO:0048518,GO:0048522,GO:0050657,GO:0050658,GO:0050789,GO:0050790,GO:0050794,GO:0051028,GO:0051052,GO:0051054,GO:0051128,GO:0051130,GO:0051168,GO:0051169,GO:0051171,GO:0051173,GO:0051179,GO:0051234,GO:0051236,GO:0051246,GO:0051247,GO:0051252,GO:0051254,GO:0051338,GO:0051347,GO:0051641,GO:0051649,GO:0051972,GO:0051973,GO:0060255,GO:0061013,GO:0065003,GO:0065007,GO:0065008,GO:0065009,GO:0070013,GO:0070274,GO:0070727,GO:0071011,GO:0071013,GO:0071166,GO:0071426,GO:0071427,GO:0071702,GO:0071704,GO:0071705,GO:0071826,GO:0071840,GO:0080090,GO:0090304,GO:0097159,GO:0097167,GO:0097525,GO:0097659,GO:0120114,GO:1901360,GO:1901361,GO:1901362,GO:1901363,GO:1901575,GO:1901576,GO:1902494,GO:1902680,GO:1903311,GO:1903506,GO:1903508,GO:1904353,GO:1904355,GO:1905661,GO:1905663,GO:1990904,GO:2000112,GO:2000278,GO:2000573,GO:2001141,GO:2001252
EggNOG free text desc.mRNA-containing ribonucleoprotein complex export from nucleus
EggNOG OGsKOG0126@1,KOG0126@2759
Ec32 ortholog descriptionRNA recognition motif domain
Ec32 orthologEc-12_000920.1
EC3.6.4.13
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03009,ko03041,ko04031,ko04131
Exons4
Model size1176
Cds size1176
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig386.10093.1prot_H-paniculata_contig386.10093.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig386 24188..26266 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930185.2544112-CDS-H-paniculata_contig386:24187..248021622930185.2544112-CDS-H-paniculata_contig386:24187..24802Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig386 24188..24802 -
1691481182.377276-CDS-H-paniculata_contig386:24187..248021691481182.377276-CDS-H-paniculata_contig386:24187..24802Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig386 24188..24802 -
1622930185.2664282-CDS-H-paniculata_contig386:25002..251671622930185.2664282-CDS-H-paniculata_contig386:25002..25167Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig386 25003..25167 -
1691481182.3927538-CDS-H-paniculata_contig386:25002..251671691481182.3927538-CDS-H-paniculata_contig386:25002..25167Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig386 25003..25167 -
1622930185.2796168-CDS-H-paniculata_contig386:25377..255581622930185.2796168-CDS-H-paniculata_contig386:25377..25558Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig386 25378..25558 -
1691481182.4065542-CDS-H-paniculata_contig386:25377..255581691481182.4065542-CDS-H-paniculata_contig386:25377..25558Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig386 25378..25558 -
1622930185.290585-CDS-H-paniculata_contig386:26051..262661622930185.290585-CDS-H-paniculata_contig386:26051..26266Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig386 26052..26266 -
1691481182.4155054-CDS-H-paniculata_contig386:26051..262661691481182.4155054-CDS-H-paniculata_contig386:26051..26266Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig386 26052..26266 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig386.10093.1

>prot_H-paniculata_contig386.10093.1 ID=prot_H-paniculata_contig386.10093.1|Name=mRNA_H-paniculata_contig386.10093.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=392bp
MNVVQEIKRINEQELAQGLSGKASWHHEYKDSAWVFAGGFSYDLTEGDVL
CVMSQWGEIEDINLCRENDTGKLLFFTSCTCPVAYLRLQGFCFIKYEDQK
STILAVDNFNGIQLLGRTIRVDHKHKYSLPKDVREREEKLDEERIARGEA
PKGMEAQWRPGVAYEGKQLASAHNFHKGVDVFAAPVKGAGSSDDNEVEDG
GFPASGSQDGLSASEKGIRKEAKKARKQARKEKRKHKKPKDKKKDEDSRD
HRNGDRKKRKVHKQDGGDVDNSFAKRRRGGDDNDNDNRANEDSRVDAARM
WERGVRAPAHAGSGDAYASGSTSRAEAPPSLSVGNVLDWRGLGGRGGGRG
GRGGRGEGRGRGARDGGRGRGGGLDERGGAANSFGGMNRRR*
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mRNA from alignment at H-paniculata_contig386:24188..26266-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig386.10093.1 ID=mRNA_H-paniculata_contig386.10093.1|Name=mRNA_H-paniculata_contig386.10093.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2079bp|location=Sequence derived from alignment at H-paniculata_contig386:24188..26266- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGAACGTGGTGCAGGAGATCAAGCGAATCAATGAGCAAGAATTGGCGCA
AGGGTTATCGGGCAAGGCCTCTTGGCATCATGAGTACAAGGACAGCGCGT
GGGTGTTTGCAGGCGGGTTCTCTTACGATTTGACTGAGGGCGACGTGCTG
TGCGTCATGTCTCAGTGGGGAGAGATCGAGGATATTAACTTGTGTCGCGA
GAACGACACAGGGAAGTCGAAGGCAAGAATCACCAGTAAATAGGCCTCGT
TGAAATAACTCTCCGCGATGGATATAGCTGTTAATCGTTAGAATTTTGTT
CTGGCGGTTGAAGTGTCGGTAGATGTGTTGTTCTTTTTGTAATTTGGTGG
AAATGCATTTTGCAAGCAGAAGAAGGTAGACTAAGCATGACTCTCGAGGT
GACAACCCTCCTGCAGTTGAGATGGATTGACGCCGTGCGATTCAAGGTCA
GTTTGCCAAAAGCACATGCTTTACCCCCTGTTACCCTCGTGCTGCGGACT
CGGTCGTCGTTTTGTTCTATTTGTAGCTATGTATACGTCGAGACGTTAAT
TTTACGCTCGTTCATGCATTCCTTATTACAGTGACCTGGCGATGTCGTGC
GTGGTCTCGTATGGTACTGCAGTAGGCTCTACTCGTACGGTACGCAGTCG
TAAACTCTGGTGTGAACGGAGAAGACTTACCGATGTCGCCCGCGTTTCTA
ACCTACAGGCTTCTGTTTTTTACGTCTTGTACTTGTCCCGTTGCGTACCT
TCGTCTACAGGGATTCTGTTTTATCAAGTATGAAGACCAGAAGAGCACAA
TCCTCGCTGTCGACAACTTCAATGGGATACAGCTGCTGGGGCGTACCATC
CGAGTGGACCACAAGCACAAATATTCTCTTCCGAAAGACGTATGTGCATT
GTTGTATCCATCCTTTTGACAGCTATATTTGTGATTGTGAAGTAAACCAA
AGCGTGACCCGGAATGGATTTGAATTGCACATGATATGCAGTTCAGACCC
ACTTCGAAGTTCAAAGTACACTGTACGTCAATCTTTCCCTTTCCGAGTGG
CCCTTTGTGGCATGTGAACCCTCTAATCTTTGATTTTACCTGCCACCAGG
TTAGGGAGCGCGAAGAGAAGCTTGACGAAGAAAGAATCGCCCGGGGCGAG
GCGCCCAAGGGGATGGAGGCGCAATGGAGACCTGGCGTAGCTTACGAGGG
CAAGCAGCTCGCCAGTGCCCACAACTTTCACAAGGGGGTGGACGTGTTTG
CTGCTCCAGTGAAGGTAAATGTAGTTCAATACGCTGTGTATAGCTCCGCA
ATTTTACTCCTGCATGTTTCGTTTGCGATTTGAAAATGCACTCGTAAAGT
ATTTATGAAAAATAGGAAGTCCGTGAAACTGAATTGACATAAGTATGAAA
CAGCGCGAAAGATCTCGACAAAGCTCAATAATACAACGTGTGTTGGTAAC
GCTATGATCCACAGGGAGCCGGCTCGAGCGATGACAATGAAGTTGAAGAC
GGTGGCTTCCCCGCGTCGGGGTCACAGGATGGTTTATCGGCGTCAGAAAA
AGGAATCCGGAAGGAGGCAAAAAAGGCCCGAAAGCAAGCGCGAAAGGAAA
AACGTAAACACAAGAAGCCCAAGGACAAGAAAAAGGATGAGGATTCCAGG
GATCATAGAAATGGCGATCGTAAAAAGCGCAAGGTACACAAACAGGACGG
GGGAGATGTCGATAACAGTTTCGCAAAGAGACGGCGGGGTGGCGACGACA
ACGACAACGACAATAGAGCCAACGAAGACTCGAGGGTAGATGCCGCACGA
ATGTGGGAACGCGGCGTGCGAGCGCCCGCTCATGCTGGCAGTGGTGACGC
GTATGCAAGCGGTTCTACCAGTCGTGCTGAAGCTCCACCGTCACTGTCCG
TCGGTAACGTTTTGGATTGGAGAGGGTTAGGAGGGCGCGGCGGTGGCCGC
GGAGGAAGGGGGGGGCGGGGTGAAGGGAGAGGTAGAGGGGCAAGAGATGG
AGGGAGGGGACGGGGTGGTGGACTTGATGAGAGGGGAGGTGCGGCGAATA
GTTTCGGAGGCATGAACCGTCGACGATAG
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Coding sequence (CDS) from alignment at H-paniculata_contig386:24188..26266-

>mRNA_H-paniculata_contig386.10093.1 ID=mRNA_H-paniculata_contig386.10093.1|Name=mRNA_H-paniculata_contig386.10093.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=2352bp|location=Sequence derived from alignment at H-paniculata_contig386:24188..26266- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGAACGTGGTGCAGGAGATCAAGCGAATCAATGAGCAAGAATTGGCGCA
AGGGTTATCGGGCAAGGCCTCTTGGCATCATGAGTACAAGGACAGCGCGT
GGGTGTTTGCAGGCGGGTTCTCTTACGATTTGACTGAGGGCGACGTGCTG
TGCGTCATGTCTCAGTGGGGAGAGATCGAGGATATTAACTTGTGTCGCGA
GAACGACACAGGGAAATGAACGTGGTGCAGGAGATCAAGCGAATCAATGA
GCAAGAATTGGCGCAAGGGTTATCGGGCAAGGCCTCTTGGCATCATGAGT
ACAAGGACAGCGCGTGGGTGTTTGCAGGCGGGTTCTCTTACGATTTGACT
GAGGGCGACGTGCTGTGCGTCATGTCTCAGTGGGGAGAGATCGAGGATAT
TAACTTGTGTCGCGAGAACGACACAGGGAAGCTTCTGTTTTTTACGTCTT
GTACTTGTCCCGTTGCGTACCTTCGTCTACAGGGATTCTGTTTTATCAAG
TATGAAGACCAGAAGAGCACAATCCTCGCTGTCGACAACTTCAATGGGAT
ACAGCTGCTGGGGCGTACCATCCGAGTGGACCACAAGCACAAATATTCTC
TTCCGAAAGACGCTTCTGTTTTTTACGTCTTGTACTTGTCCCGTTGCGTA
CCTTCGTCTACAGGGATTCTGTTTTATCAAGTATGAAGACCAGAAGAGCA
CAATCCTCGCTGTCGACAACTTCAATGGGATACAGCTGCTGGGGCGTACC
ATCCGAGTGGACCACAAGCACAAATATTCTCTTCCGAAAGACGTTAGGGA
GCGCGAAGAGAAGCTTGACGAAGAAAGAATCGCCCGGGGCGAGGCGCCCA
AGGGGATGGAGGCGCAATGGAGACCTGGCGTAGCTTACGAGGGCAAGCAG
CTCGCCAGTGCCCACAACTTTCACAAGGGGGTGGACGTGTTTGCTGCTCC
AGTGAAGGTTAGGGAGCGCGAAGAGAAGCTTGACGAAGAAAGAATCGCCC
GGGGCGAGGCGCCCAAGGGGATGGAGGCGCAATGGAGACCTGGCGTAGCT
TACGAGGGCAAGCAGCTCGCCAGTGCCCACAACTTTCACAAGGGGGTGGA
CGTGTTTGCTGCTCCAGTGAAGGGAGCCGGCTCGAGCGATGACAATGAAG
TTGAAGACGGTGGCTTCCCCGCGTCGGGGTCACAGGATGGTTTATCGGCG
TCAGAAAAAGGAATCCGGAAGGAGGCAAAAAAGGCCCGAAAGCAAGCGCG
AAAGGAAAAACGTAAACACAAGAAGCCCAAGGACAAGAAAAAGGATGAGG
ATTCCAGGGATCATAGAAATGGCGATCGTAAAAAGCGCAAGGTACACAAA
CAGGACGGGGGAGATGTCGATAACAGTTTCGCAAAGAGACGGCGGGGTGG
CGACGACAACGACAACGACAATAGAGCCAACGAAGACTCGAGGGTAGATG
CCGCACGAATGTGGGAACGCGGCGTGCGAGCGCCCGCTCATGCTGGCAGT
GGTGACGCGTATGCAAGCGGTTCTACCAGTCGTGCTGAAGCTCCACCGTC
ACTGTCCGTCGGTAACGTTTTGGATTGGAGAGGGTTAGGAGGGCGCGGCG
GTGGCCGCGGAGGAAGGGGGGGGCGGGGTGAAGGGAGAGGTAGAGGGGCA
AGAGATGGAGGGAGGGGACGGGGTGGTGGACTTGATGAGAGGGGAGGTGC
GGCGAATAGTTTCGGAGGCATGAACCGTCGACGATAGGGAGCCGGCTCGA
GCGATGACAATGAAGTTGAAGACGGTGGCTTCCCCGCGTCGGGGTCACAG
GATGGTTTATCGGCGTCAGAAAAAGGAATCCGGAAGGAGGCAAAAAAGGC
CCGAAAGCAAGCGCGAAAGGAAAAACGTAAACACAAGAAGCCCAAGGACA
AGAAAAAGGATGAGGATTCCAGGGATCATAGAAATGGCGATCGTAAAAAG
CGCAAGGTACACAAACAGGACGGGGGAGATGTCGATAACAGTTTCGCAAA
GAGACGGCGGGGTGGCGACGACAACGACAACGACAATAGAGCCAACGAAG
ACTCGAGGGTAGATGCCGCACGAATGTGGGAACGCGGCGTGCGAGCGCCC
GCTCATGCTGGCAGTGGTGACGCGTATGCAAGCGGTTCTACCAGTCGTGC
TGAAGCTCCACCGTCACTGTCCGTCGGTAACGTTTTGGATTGGAGAGGGT
TAGGAGGGCGCGGCGGTGGCCGCGGAGGAAGGGGGGGGCGGGGTGAAGGG
AGAGGTAGAGGGGCAAGAGATGGAGGGAGGGGACGGGGTGGTGGACTTGA
TGAGAGGGGAGGTGCGGCGAATAGTTTCGGAGGCATGAACCGTCGACGAT
AG
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