prot_H-paniculata_contig38591.10090.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig38591.10090.1
Unique Nameprot_H-paniculata_contig38591.10090.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length75
Homology
[Close]
BLAST of mRNA_H-paniculata_contig38591.10090.1 vs. uniprot
Match: D7G6W2_ECTSI (NB-ARC and TPR repeat-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6W2_ECTSI)

HSP 1 Score: 92.4 bits (228), Expect = 3.640e-20
Identity = 46/71 (64.79%), Postives = 52/71 (73.24%), Query Frame = 0 
Query:    9 APLLKGPPQDPNSWRILHDALA----ARLGTHRAMTVEAHVEAVLETSFGAMADDPRRQERCRFLAVLAPG 75
            A  L+GPPQDP SWR LH+AL+     RLGT R M V   V+AVLE S GAMADDP +Q+RC FLAVLAPG
Sbjct:  407 AEALQGPPQDPKSWRTLHEALSKAMSTRLGTDRIMAVPKRVDAVLEVSLGAMADDPAKQQRCLFLAVLAPG 477
[Close]
BLAST of mRNA_H-paniculata_contig38591.10090.1 vs. uniprot
Match: A0A6H5KMV3_9PHAE (NB-ARC domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KMV3_9PHAE)

HSP 1 Score: 50.1 bits (118), Expect = 2.870e-5
Identity = 26/42 (61.90%), Postives = 29/42 (69.05%), Query Frame = 0 
Query:   34 GTHRAMTVEAHVEAVLETSFGAMADDPRRQERCRFLAVLAPG 75
            G  R MTV   V+AVLE S GAMA+DP +Q RC FLA  APG
Sbjct:  397 GNDRIMTVPKRVDAVLEVSLGAMAEDPAKQRRCLFLA--APG 436
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig38591.10090.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G6W2_ECTSI3.640e-2064.79NB-ARC and TPR repeat-containing protein n=1 Tax=E... [more]
A0A6H5KMV3_9PHAE2.870e-561.90NB-ARC domain-containing protein n=1 Tax=Ectocarpu... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig38591contigH-paniculata_contig38591:4..228 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig38591.10090.1mRNA_H-paniculata_contig38591.10090.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig38591 4..229 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig38591.10090.1 ID=prot_H-paniculata_contig38591.10090.1|Name=mRNA_H-paniculata_contig38591.10090.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=75bp
LALALDLAAPLLKGPPQDPNSWRILHDALAARLGTHRAMTVEAHVEAVLE
TSFGAMADDPRRQERCRFLAVLAPG
back to top