mRNA_H-paniculata_contig38591.10090.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig38591.10090.1
Unique NamemRNA_H-paniculata_contig38591.10090.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig38591.10090.1 vs. uniprot
Match: D7G6W2_ECTSI (NB-ARC and TPR repeat-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6W2_ECTSI)

HSP 1 Score: 92.4 bits (228), Expect = 3.640e-20
Identity = 46/71 (64.79%), Postives = 52/71 (73.24%), Query Frame = 1 
Query:   25 APLLKGPPQDPNSWRILHDALA----ARLGTHRAMTVEAHVEAVLETSFGAMADDPRRQERCRFLAVLAPG 225
            A  L+GPPQDP SWR LH+AL+     RLGT R M V   V+AVLE S GAMADDP +Q+RC FLAVLAPG
Sbjct:  407 AEALQGPPQDPKSWRTLHEALSKAMSTRLGTDRIMAVPKRVDAVLEVSLGAMADDPAKQQRCLFLAVLAPG 477
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BLAST of mRNA_H-paniculata_contig38591.10090.1 vs. uniprot
Match: A0A6H5KMV3_9PHAE (NB-ARC domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KMV3_9PHAE)

HSP 1 Score: 50.1 bits (118), Expect = 2.870e-5
Identity = 26/42 (61.90%), Postives = 29/42 (69.05%), Query Frame = 1 
Query:  100 GTHRAMTVEAHVEAVLETSFGAMADDPRRQERCRFLAVLAPG 225
            G  R MTV   V+AVLE S GAMA+DP +Q RC FLA  APG
Sbjct:  397 GNDRIMTVPKRVDAVLEVSLGAMAEDPAKQRRCLFLA--APG 436
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig38591.10090.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G6W2_ECTSI3.640e-2064.79NB-ARC and TPR repeat-containing protein n=1 Tax=E... [more]
A0A6H5KMV3_9PHAE2.870e-561.90NB-ARC domain-containing protein n=1 Tax=Ectocarpu... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig38591contigH-paniculata_contig38591:4..229 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score92.8
Seed ortholog evalue7.2e-17
Seed eggNOG ortholog2880.D7G6W2
KEGG koko:K10407
KEGG Pathwayko05132,map05132
Hectar predicted targeting categoryother localisation
EggNOG free text desc.determination of stomach left/right asymmetry
EggNOG OGsCOG0457@1,KOG1840@2759,KOG4658@1,KOG4658@2759
COG Functional cat.C
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03019,ko04812
Exons1
Model size228
Cds size225
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930184.5107007-CDS-H-paniculata_contig38591:3..2281622930184.5107007-CDS-H-paniculata_contig38591:3..228Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig38591 4..228 +
1691481181.9247744-CDS-H-paniculata_contig38591:3..2281691481181.9247744-CDS-H-paniculata_contig38591:3..228Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig38591 4..228 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig38591.10090.1prot_H-paniculata_contig38591.10090.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig38591 4..228 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig38591.10090.1

>prot_H-paniculata_contig38591.10090.1 ID=prot_H-paniculata_contig38591.10090.1|Name=mRNA_H-paniculata_contig38591.10090.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=75bp
LALALDLAAPLLKGPPQDPNSWRILHDALAARLGTHRAMTVEAHVEAVLE
TSFGAMADDPRRQERCRFLAVLAPG
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mRNA from alignment at H-paniculata_contig38591:4..229+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig38591.10090.1 ID=mRNA_H-paniculata_contig38591.10090.1|Name=mRNA_H-paniculata_contig38591.10090.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=226bp|location=Sequence derived from alignment at H-paniculata_contig38591:4..229+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CTGGCTCTTGCGCTTGACCTCGCCGCGCCGCTGCTAAAGGGCCCTCCACA
AGATCCGAACTCTTGGCGCATTTTACATGATGCTCTGGCAGCGCGATTGG
GGACGCACCGTGCCATGACTGTAGAAGCACATGTTGAAGCTGTCCTTGAG
ACAAGCTTCGGTGCCATGGCAGATGACCCCCGCAGGCAGGAGAGATGCAG
GTTCCTTGCGGTACTTGCTCCGGGTA
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Coding sequence (CDS) from alignment at H-paniculata_contig38591:4..229+

>mRNA_H-paniculata_contig38591.10090.1 ID=mRNA_H-paniculata_contig38591.10090.1|Name=mRNA_H-paniculata_contig38591.10090.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=450bp|location=Sequence derived from alignment at H-paniculata_contig38591:4..229+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CTGGCTCTTGCGCTTGACCTCGCCGCGCCGCTGCTAAAGGGCCCTCCACA
AGATCCGAACTCTTGGCGCATTTTACATGATGCTCTGGCAGCGCGATTGG
GGACGCACCGTGCCATGACTGTAGAAGCACATGTTGAAGCTGTCCTTGAG
ACAAGCTTCGGTGCCATGGCAGATGACCCCCGCAGGCAGGAGAGATGCAG
GTTCCTTGCGGTACTTGCTCCGGGTCTGGCTCTTGCGCTTGACCTCGCCG
CGCCGCTGCTAAAGGGCCCTCCACAAGATCCGAACTCTTGGCGCATTTTA
CATGATGCTCTGGCAGCGCGATTGGGGACGCACCGTGCCATGACTGTAGA
AGCACATGTTGAAGCTGTCCTTGAGACAAGCTTCGGTGCCATGGCAGATG
ACCCCCGCAGGCAGGAGAGATGCAGGTTCCTTGCGGTACTTGCTCCGGGT
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