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Homology
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
| IPR Term | IPR Description | Source | Source Term | Source Description | Alignment |
|---|
| IPR002885 | Pentatricopeptide repeat | PFAM | PF13041 | PPR_2 | coord: 200..247
e-value: 7.3E-12
score: 45.3
coord: 550..597
e-value: 5.0E-11
score: 42.6
coord: 375..422
e-value: 2.7E-12
score: 46.7
coord: 305..352
e-value: 2.1E-9
score: 37.5 |
| IPR002885 | Pentatricopeptide repeat | TIGRFAM | TIGR00756 | TIGR00756 | coord: 483..517
e-value: 6.2E-8
score: 30.3
coord: 309..342
e-value: 1.6E-6
score: 25.9
coord: 448..482
e-value: 1.0E-4
score: 20.2
coord: 273..307
e-value: 0.0023
score: 16.0
coord: 518..552
e-value: 1.0E-6
score: 26.5
coord: 203..237
e-value: 2.1E-8
score: 31.8
coord: 378..412
e-value: 1.3E-6
score: 26.2
coord: 238..272
e-value: 9.4E-9
score: 32.9
coord: 413..447
e-value: 3.0E-8
score: 31.3
coord: 343..377
e-value: 5.9E-8
score: 30.4
coord: 553..587
e-value: 2.8E-7
score: 28.3
coord: 171..202
e-value: 1.2E-7
score: 29.4 |
| IPR002885 | Pentatricopeptide repeat | PFAM | PF01535 | PPR | coord: 171..197
e-value: 4.9E-5
score: 23.3
coord: 273..301
e-value: 0.16
score: 12.3 |
| IPR002885 | Pentatricopeptide repeat | PFAM | PF13812 | PPR_3 | coord: 434..494
e-value: 5.3E-13
score: 48.8
coord: 498..529
e-value: 1.3E-4
score: 22.0 |
| IPR002885 | Pentatricopeptide repeat | PROSITE | PS51375 | PPR | coord: 586..620
score: 7.914 |
| IPR002885 | Pentatricopeptide repeat | PROSITE | PS51375 | PPR | coord: 481..515
score: 12.145 |
| IPR002885 | Pentatricopeptide repeat | PROSITE | PS51375 | PPR | coord: 201..235
score: 12.364 |
| IPR002885 | Pentatricopeptide repeat | PROSITE | PS51375 | PPR | coord: 411..445
score: 11.663 |
| IPR002885 | Pentatricopeptide repeat | PROSITE | PS51375 | PPR | coord: 341..375
score: 12.463 |
| IPR002885 | Pentatricopeptide repeat | PROSITE | PS51375 | PPR | coord: 446..480
score: 11.071 |
| IPR002885 | Pentatricopeptide repeat | PROSITE | PS51375 | PPR | coord: 376..410
score: 11.477 |
| IPR002885 | Pentatricopeptide repeat | PROSITE | PS51375 | PPR | coord: 236..270
score: 12.025 |
| IPR002885 | Pentatricopeptide repeat | PROSITE | PS51375 | PPR | coord: 306..340
score: 11.433 |
| IPR002885 | Pentatricopeptide repeat | PROSITE | PS51375 | PPR | coord: 271..305
score: 9.208 |
| IPR002885 | Pentatricopeptide repeat | PROSITE | PS51375 | PPR | coord: 551..585
score: 11.52 |
| IPR002885 | Pentatricopeptide repeat | PROSITE | PS51375 | PPR | coord: 516..550
score: 11.356 |
| IPR002885 | Pentatricopeptide repeat | PROSITE | PS51375 | PPR | coord: 166..200
score: 10.479 |
| IPR011990 | Tetratricopeptide-like helical domain superfamily | GENE3D | 1.25.40.10 | | coord: 303..387
e-value: 1.6E-26
score: 94.7
coord: 388..494
e-value: 3.1E-33
score: 116.7 |
| IPR011990 | Tetratricopeptide-like helical domain superfamily | GENE3D | 1.25.40.10 | | coord: 131..302
e-value: 8.2E-40
score: 139.2
coord: 496..624
e-value: 5.4E-35
score: 123.4 |
| None | No IPR available | PANTHER | PTHR46128 | FAMILY NOT NAMED | coord: 442..617
coord: 169..334
coord: 290..457
coord: 332..495 |
Alignments
The following features are aligned
Analyses
This polypeptide is derived from or has results from the following analyses
Relationships
This polypeptide derives from the following mRNA feature(s):
Sequences
The following sequences are available for this feature:
polypeptide sequence >prot_H-paniculata_contig3835.10045.1 ID=prot_H-paniculata_contig3835.10045.1|Name=mRNA_H-paniculata_contig3835.10045.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=627bp
MSLIHWNGIGLRPVHAIGRIWRKLKMSSPAHIGQPKTQAGCHRHPFHVAS
AASEAHLLVAPIYTVVNSLKLTGRSRSPLLQASRGCLVGQASLPFRGMAT
NVVVHSWAKARAERMDKTGTRSAPQQTQSTEGRAVMRQLKEAGFQRDWRK
VQAILDRALTSSSVDPLRVSNAAMSAFVKSGRWDKALDLLDDMRANGSTP
DVISYTTAMKAYGEGNQWDKALDLLTEMRRNGVTPNVISYNMAMKACGDG
GQWEKAVDLWVKMKANGITPDVVSYGAAMKAYGDGNQCEKVLNLLAEMKA
SCVSPDVMSYGTAMKACGSSGQWQKAVELLLEMEATGITPDVISYNTAIK
ACGDGGQWEKAVDLLIEMEAKGITPNVVSYNTAMKAIGDGKRWEKAVDLL
AEMEAKGVAPNVVSYNTAIKACGDGEQWEKALDLFSEMKANGITLDVVSY
NTTMKVYGDGKQWQNAMDLLAEMEVKGVSPNVISYNTAMKACGNGGQWEK
AMDLLTEMEIKGVNPNVISYNTAMSACGDGGQWEKSVDLLADMEAKGMIP
NVISYTTAMRACRDDGQWEKAIDLLVEMKTKGIIPDVVSYDAVITACRKA
GQLERAAEILKDSHALRTRGARSTLG* back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR002885 | Pentatricopeptide_repeat |
| IPR011990 | TPR-like_helical_dom_sf |
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