mRNA_H-paniculata_contig3835.10045.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig3835.10045.1
Unique NamemRNA_H-paniculata_contig3835.10045.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig3835.10045.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig3835contigH-paniculata_contig3835:12577..15932 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size2342
Cds size1881
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig3835.10045.1prot_H-paniculata_contig3835.10045.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig3835 13677..15557 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930178.6545298-UTR-H-paniculata_contig3835:12576..126371622930178.6545298-UTR-H-paniculata_contig3835:12576..12637Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig3835 12577..12637 +
1691481179.2412822-UTR-H-paniculata_contig3835:12576..126371691481179.2412822-UTR-H-paniculata_contig3835:12576..12637Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig3835 12577..12637 +
1622930178.6720753-UTR-H-paniculata_contig3835:13651..136761622930178.6720753-UTR-H-paniculata_contig3835:13651..13676Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig3835 13652..13676 +
1691481179.2498384-UTR-H-paniculata_contig3835:13651..136761691481179.2498384-UTR-H-paniculata_contig3835:13651..13676Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig3835 13652..13676 +
1622930178.7014372-UTR-H-paniculata_contig3835:15557..159321622930178.7014372-UTR-H-paniculata_contig3835:15557..15932Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig3835 15558..15932 +
1691481179.2733667-UTR-H-paniculata_contig3835:15557..159321691481179.2733667-UTR-H-paniculata_contig3835:15557..15932Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig3835 15558..15932 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930178.688209-CDS-H-paniculata_contig3835:13676..155571622930178.688209-CDS-H-paniculata_contig3835:13676..15557Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3835 13677..15557 +
1691481179.2649045-CDS-H-paniculata_contig3835:13676..155571691481179.2649045-CDS-H-paniculata_contig3835:13676..15557Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3835 13677..15557 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig3835.10045.1

>prot_H-paniculata_contig3835.10045.1 ID=prot_H-paniculata_contig3835.10045.1|Name=mRNA_H-paniculata_contig3835.10045.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=627bp
MSLIHWNGIGLRPVHAIGRIWRKLKMSSPAHIGQPKTQAGCHRHPFHVAS
AASEAHLLVAPIYTVVNSLKLTGRSRSPLLQASRGCLVGQASLPFRGMAT
NVVVHSWAKARAERMDKTGTRSAPQQTQSTEGRAVMRQLKEAGFQRDWRK
VQAILDRALTSSSVDPLRVSNAAMSAFVKSGRWDKALDLLDDMRANGSTP
DVISYTTAMKAYGEGNQWDKALDLLTEMRRNGVTPNVISYNMAMKACGDG
GQWEKAVDLWVKMKANGITPDVVSYGAAMKAYGDGNQCEKVLNLLAEMKA
SCVSPDVMSYGTAMKACGSSGQWQKAVELLLEMEATGITPDVISYNTAIK
ACGDGGQWEKAVDLLIEMEAKGITPNVVSYNTAMKAIGDGKRWEKAVDLL
AEMEAKGVAPNVVSYNTAIKACGDGEQWEKALDLFSEMKANGITLDVVSY
NTTMKVYGDGKQWQNAMDLLAEMEVKGVSPNVISYNTAMKACGNGGQWEK
AMDLLTEMEIKGVNPNVISYNTAMSACGDGGQWEKSVDLLADMEAKGMIP
NVISYTTAMRACRDDGQWEKAIDLLVEMKTKGIIPDVVSYDAVITACRKA
GQLERAAEILKDSHALRTRGARSTLG*
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mRNA from alignment at H-paniculata_contig3835:12577..15932+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig3835.10045.1 ID=mRNA_H-paniculata_contig3835.10045.1|Name=mRNA_H-paniculata_contig3835.10045.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=3356bp|location=Sequence derived from alignment at H-paniculata_contig3835:12577..15932+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ACCTTGAAAGGCTGAGGGTTGCTCGCTGTTTATCCCAGCTAGCTGAGCAG
GCACATCAAAGGTAAGACGCTTTGATCCCATGTTTAGAGTTAATCTGTAT
ACTAATAGTACAGTGCTGTCTGCGTTTGCTGAACCCGTGTGCTGCATAAG
GTCATAGACAGGGACATGTACTGACTACTGACTGTTCGATGTTGGAACGG
TCGTTAACCACACTTCTATTTCCGTGCAGACGTGTGCTGTCACTCTGCTG
GTATATAGCAGTGTACTGCCACTTTCCTTTTTAGAGTTGCGCTCTCCGCT
CAGGAGAAATGAAGGTGTACCAAGCTATACTCTTCTCAGAGCACAGAGAC
AGCCAGTATGTTGCATGTGTGAATAATGTAACGGAGAGCAACTAATTGCT
CCGAAAAATGACCGACGGTACATGCGCGCAACGATTTGGGGTGCATGTTA
ACAACGATGAAAAATATATATTTTTCTATTTGAATTTGGACTGAATTTCC
CTAGATTCATTTGTTAAGAGCTGAACGAGACTGCAGTATAACTTTCGATC
CGCCGACTCAAGCCCTTCAGAGCTAGATCAGGTTTCTCATGGCTTATCGG
TCGAGCGAGACGCTCACCGCAGAATGACAAATATACAATCTAATACCTGT
AGAGGTCTACAGTACACGGCTCCCACGCTAGCTTTTGCTTCAGTTACGCA
CTACATATATTATCAACGCCTTCGCGTGACAGGAATCCGTTCAGTATTGG
GTGAGCTACAGTAATCCAGGTGGAGTCGGGATCACAAAGCACCTGTCTCT
ATGCAGTATGAATTGGCGGGAAGGGTACTGACAAAACGTAGTGACAGTCC
ATTATGCGTGAAAATCATACTCCTGTGCAACATCAATAGTACTCGCACCA
AGGGCGAATGGAAAGCACCCGAATTTATCTTCTGGCATCAATTTATCTGG
AAACCAACCACCCATCAACGACGAACTACAGCAGAACTAGCCCGAGTCAC
ACCCACCGTGCCTAACATGAATCCTTTCTCCTTTCCTCCGTTCCCGTTTT
TGTTTTATCTCTGCCTCGCCAGCAGGTTTCCTCAACTGTTCCATGGCACA
ATGTCCTTGATCCACTGGAATGGTATTGGCCTAAGACCAGTCCACGCCAT
TGGGCGGATCTGGCGCAAGCTGAAAATGTCAAGTCCTGCTCATATTGGGC
AGCCCAAAACGCAGGCGGGGTGTCATCGTCATCCTTTTCATGTAGCGAGC
GCCGCGTCCGAGGCCCACTTGTTGGTGGCGCCGATTTACACAGTTGTGAA
CAGCCTCAAGCTTACGGGGCGGTCACGTAGTCCTCTATTGCAAGCTTCTC
GCGGTTGCCTGGTAGGACAGGCCTCGTTGCCTTTTCGAGGGATGGCGACA
AATGTCGTGGTACACTCATGGGCGAAAGCACGCGCTGAAAGGATGGATAA
GACGGGAACAAGAAGTGCACCGCAACAAACGCAATCTACTGAAGGGAGGG
CAGTCATGCGCCAACTAAAGGAGGCTGGATTCCAGAGAGACTGGCGAAAA
GTGCAAGCTATCCTGGATAGGGCACTTACATCGTCCAGTGTGGATCCGTT
GCGCGTATCGAATGCTGCGATGAGTGCCTTCGTCAAGAGCGGCCGGTGGG
ACAAGGCTTTGGATTTGCTGGACGATATGAGGGCGAATGGTAGTACTCCA
GACGTGATCAGCTACACGACGGCAATGAAAGCATACGGGGAGGGTAACCA
ATGGGACAAGGCCTTAGATTTGTTGACCGAGATGAGACGCAACGGCGTGA
CCCCTAACGTGATCAGCTACAACATGGCAATGAAAGCATGCGGGGACGGT
GGACAGTGGGAGAAGGCTGTGGATCTGTGGGTGAAAATGAAGGCAAATGG
TATCACTCCGGATGTGGTCAGCTATGGCGCGGCGATGAAGGCGTACGGGG
ACGGTAATCAGTGCGAGAAGGTTTTGAATCTGTTGGCCGAGATGAAGGCG
AGCTGTGTCAGTCCAGATGTGATGAGCTACGGCACAGCGATGAAAGCATG
CGGTAGTAGCGGACAATGGCAGAAAGCTGTGGAGCTGTTGCTCGAGATGG
AAGCGACGGGTATCACTCCTGACGTAATTAGCTACAACACGGCGATAAAA
GCATGCGGGGACGGTGGGCAATGGGAGAAGGCTGTGGATCTATTGATCGA
GATGGAGGCGAAGGGTATCACTCCCAACGTGGTCAGCTACAACACGGCGA
TGAAGGCAATCGGAGATGGGAAGCGGTGGGAAAAGGCTGTGGATCTATTG
GCCGAGATGGAGGCCAAGGGTGTCGCTCCCAACGTGGTAAGCTATAACAC
GGCGATAAAAGCATGCGGGGATGGTGAACAGTGGGAGAAGGCATTGGATC
TGTTTTCCGAAATGAAGGCGAATGGTATCACCCTTGACGTGGTCAGCTAT
AACACGACAATGAAAGTATACGGGGACGGTAAGCAATGGCAGAACGCCAT
GGATCTCTTGGCGGAGATGGAAGTAAAGGGTGTGAGTCCTAACGTAATAA
GTTACAACACAGCGATGAAGGCATGTGGAAACGGTGGGCAATGGGAAAAA
GCAATGGATCTCTTGACCGAGATGGAAATAAAGGGTGTGAATCCTAACGT
GATAAGCTACAACACGGCGATGAGCGCATGTGGGGACGGTGGACAGTGGG
AGAAGTCTGTGGACCTTCTGGCTGATATGGAGGCGAAGGGTATGATTCCT
AACGTGATCAGCTACACGACGGCAATGAGAGCCTGTAGGGACGATGGGCA
GTGGGAGAAGGCTATAGATTTATTGGTCGAAATGAAGACGAAGGGTATTA
TTCCGGACGTAGTTAGCTACGACGCGGTCATCACGGCCTGTCGCAAAGCT
GGCCAGCTGGAGAGGGCTGCCGAGATTTTGAAAGATTCGCACGCCCTCAG
GACTCGTGGGGCACGGTCAACACTTGGATGAGCTTCTTTTATATATATAC
AAGATGACCAACGAAGGGGTTTGCCTGTCAGATTAGATGGTACATTAACA
TCAAGAGCCTTCTTGTGTGTGCCCCGGAGTGCCAAAAGGATTATCATTTT
ACACGCGTCATACTGAAAAGTGTTGTCATCCCTGTTGTTGCACCTTTTCT
GATTGTCTATCTGCATACACATACTGTCTTGGTAAGACGTTATTATTGTG
ATTCTGGCGAATCTTTTCGATTTATCTCGATTTTCCACGATACGCTATTG
GCTGTGTTATGAATGTTTGCACCTGCTACACCGTTAACCGATTGACGGGG
AGCTTCGTCTCTTTTTTGTGTTCCGGTATGTGCTGTGTCTACGTTGATAT
GATATG
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Coding sequence (CDS) from alignment at H-paniculata_contig3835:12577..15932+

>mRNA_H-paniculata_contig3835.10045.1 ID=mRNA_H-paniculata_contig3835.10045.1|Name=mRNA_H-paniculata_contig3835.10045.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=3762bp|location=Sequence derived from alignment at H-paniculata_contig3835:12577..15932+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTCCTTGATCCACTGGAATGGTATTGGCCTAAGACCAGTCCACGCCAT
TGGGCGGATCTGGCGCAAGCTGAAAATGTCAAGTCCTGCTCATATTGGGC
AGCCCAAAACGCAGGCGGGGTGTCATCGTCATCCTTTTCATGTAGCGAGC
GCCGCGTCCGAGGCCCACTTGTTGGTGGCGCCGATTTACACAGTTGTGAA
CAGCCTCAAGCTTACGGGGCGGTCACGTAGTCCTCTATTGCAAGCTTCTC
GCGGTTGCCTGGTAGGACAGGCCTCGTTGCCTTTTCGAGGGATGGCGACA
AATGTCGTGGTACACTCATGGGCGAAAGCACGCGCTGAAAGGATGGATAA
GACGGGAACAAGAAGTGCACCGCAACAAACGCAATCTACTGAAGGGAGGG
CAGTCATGCGCCAACTAAAGGAGGCTGGATTCCAGAGAGACTGGCGAAAA
GTGCAAGCTATCCTGGATAGGGCACTTACATCGTCCAGTGTGGATCCGTT
GCGCGTATCGAATGCTGCGATGAGTGCCTTCGTCAAGAGCGGCCGGTGGG
ACAAGGCTTTGGATTTGCTGGACGATATGAGGGCGAATGGTAGTACTCCA
GACGTGATCAGCTACACGACGGCAATGAAAGCATACGGGGAGGGTAACCA
ATGGGACAAGGCCTTAGATTTGTTGACCGAGATGAGACGCAACGGCGTGA
CCCCTAACGTGATCAGCTACAACATGGCAATGAAAGCATGCGGGGACGGT
GGACAGTGGGAGAAGGCTGTGGATCTGTGGGTGAAAATGAAGGCAAATGG
TATCACTCCGGATGTGGTCAGCTATGGCGCGGCGATGAAGGCGTACGGGG
ACGGTAATCAGTGCGAGAAGGTTTTGAATCTGTTGGCCGAGATGAAGGCG
AGCTGTGTCAGTCCAGATGTGATGAGCTACGGCACAGCGATGAAAGCATG
CGGTAGTAGCGGACAATGGCAGAAAGCTGTGGAGCTGTTGCTCGAGATGG
AAGCGACGGGTATCACTCCTGACGTAATTAGCTACAACACGGCGATAAAA
GCATGCGGGGACGGTGGGCAATGGGAGAAGGCTGTGGATCTATTGATCGA
GATGGAGGCGAAGGGTATCACTCCCAACGTGGTCAGCTACAACACGGCGA
TGAAGGCAATCGGAGATGGGAAGCGGTGGGAAAAGGCTGTGGATCTATTG
GCCGAGATGGAGGCCAAGGGTGTCGCTCCCAACGTGGTAAGCTATAACAC
GGCGATAAAAGCATGCGGGGATGGTGAACAGTGGGAGAAGGCATTGGATC
TGTTTTCCGAAATGAAGGCGAATGGTATCACCCTTGACGTGGTCAGCTAT
AACACGACAATGAAAGTATACGGGGACGGTAAGCAATGGCAGAACGCCAT
GGATCTCTTGGCGGAGATGGAAGTAAAGGGTGTGAGTCCTAACGTAATAA
GTTACAACACAGCGATGAAGGCATGTGGAAACGGTGGGCAATGGGAAAAA
GCAATGGATCTCTTGACCGAGATGGAAATAAAGGGTGTGAATCCTAACGT
GATAAGCTACAACACGGCGATGAGCGCATGTGGGGACGGTGGACAGTGGG
AGAAGTCTGTGGACCTTCTGGCTGATATGGAGGCGAAGGGTATGATTCCT
AACGTGATCAGCTACACGACGGCAATGAGAGCCTGTAGGGACGATGGGCA
GTGGGAGAAGGCTATAGATTTATTGGTCGAAATGAAGACGAAGGGTATTA
TTCCGGACGTAGTTAGCTACGACGCGGTCATCACGGCCTGTCGCAAAGCT
GGCCAGCTGGAGAGGGCTGCCGAGATTTTGAAAGATTCGCACGCCCTCAG
GACTCGTGGGGCACGGTCAACACTTGGATGAATGTCCTTGATCCACTGGA
ATGGTATTGGCCTAAGACCAGTCCACGCCATTGGGCGGATCTGGCGCAAG
CTGAAAATGTCAAGTCCTGCTCATATTGGGCAGCCCAAAACGCAGGCGGG
GTGTCATCGTCATCCTTTTCATGTAGCGAGCGCCGCGTCCGAGGCCCACT
TGTTGGTGGCGCCGATTTACACAGTTGTGAACAGCCTCAAGCTTACGGGG
CGGTCACGTAGTCCTCTATTGCAAGCTTCTCGCGGTTGCCTGGTAGGACA
GGCCTCGTTGCCTTTTCGAGGGATGGCGACAAATGTCGTGGTACACTCAT
GGGCGAAAGCACGCGCTGAAAGGATGGATAAGACGGGAACAAGAAGTGCA
CCGCAACAAACGCAATCTACTGAAGGGAGGGCAGTCATGCGCCAACTAAA
GGAGGCTGGATTCCAGAGAGACTGGCGAAAAGTGCAAGCTATCCTGGATA
GGGCACTTACATCGTCCAGTGTGGATCCGTTGCGCGTATCGAATGCTGCG
ATGAGTGCCTTCGTCAAGAGCGGCCGGTGGGACAAGGCTTTGGATTTGCT
GGACGATATGAGGGCGAATGGTAGTACTCCAGACGTGATCAGCTACACGA
CGGCAATGAAAGCATACGGGGAGGGTAACCAATGGGACAAGGCCTTAGAT
TTGTTGACCGAGATGAGACGCAACGGCGTGACCCCTAACGTGATCAGCTA
CAACATGGCAATGAAAGCATGCGGGGACGGTGGACAGTGGGAGAAGGCTG
TGGATCTGTGGGTGAAAATGAAGGCAAATGGTATCACTCCGGATGTGGTC
AGCTATGGCGCGGCGATGAAGGCGTACGGGGACGGTAATCAGTGCGAGAA
GGTTTTGAATCTGTTGGCCGAGATGAAGGCGAGCTGTGTCAGTCCAGATG
TGATGAGCTACGGCACAGCGATGAAAGCATGCGGTAGTAGCGGACAATGG
CAGAAAGCTGTGGAGCTGTTGCTCGAGATGGAAGCGACGGGTATCACTCC
TGACGTAATTAGCTACAACACGGCGATAAAAGCATGCGGGGACGGTGGGC
AATGGGAGAAGGCTGTGGATCTATTGATCGAGATGGAGGCGAAGGGTATC
ACTCCCAACGTGGTCAGCTACAACACGGCGATGAAGGCAATCGGAGATGG
GAAGCGGTGGGAAAAGGCTGTGGATCTATTGGCCGAGATGGAGGCCAAGG
GTGTCGCTCCCAACGTGGTAAGCTATAACACGGCGATAAAAGCATGCGGG
GATGGTGAACAGTGGGAGAAGGCATTGGATCTGTTTTCCGAAATGAAGGC
GAATGGTATCACCCTTGACGTGGTCAGCTATAACACGACAATGAAAGTAT
ACGGGGACGGTAAGCAATGGCAGAACGCCATGGATCTCTTGGCGGAGATG
GAAGTAAAGGGTGTGAGTCCTAACGTAATAAGTTACAACACAGCGATGAA
GGCATGTGGAAACGGTGGGCAATGGGAAAAAGCAATGGATCTCTTGACCG
AGATGGAAATAAAGGGTGTGAATCCTAACGTGATAAGCTACAACACGGCG
ATGAGCGCATGTGGGGACGGTGGACAGTGGGAGAAGTCTGTGGACCTTCT
GGCTGATATGGAGGCGAAGGGTATGATTCCTAACGTGATCAGCTACACGA
CGGCAATGAGAGCCTGTAGGGACGATGGGCAGTGGGAGAAGGCTATAGAT
TTATTGGTCGAAATGAAGACGAAGGGTATTATTCCGGACGTAGTTAGCTA
CGACGCGGTCATCACGGCCTGTCGCAAAGCTGGCCAGCTGGAGAGGGCTG
CCGAGATTTTGAAAGATTCGCACGCCCTCAGGACTCGTGGGGCACGGTCA
ACACTTGGATGA
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