prot_H-paniculata_contig38236.10021.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig38236.10021.1
Unique Nameprot_H-paniculata_contig38236.10021.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length249
Homology
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BLAST of mRNA_H-paniculata_contig38236.10021.1 vs. uniprot
Match: A0A6H5JHT2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHT2_9PHAE)

HSP 1 Score: 102 bits (255), Expect = 3.260e-21
Identity = 115/285 (40.35%), Postives = 145/285 (50.88%), Query Frame = 0 
Query:    1 RLTSLEGFAALHSLRELDVSQNGVQSMLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTQSDMRALSLNSGLRRLRMDGNPFCSIGVPSNQSFEVYMHHLMPGTTLLGGASSSSAIQPPPALPLSANMEYP--------------SHHPHHDHRVLSSPQRNYAQPGTAFSRAR-------------------DDISIARRWRDISSTSGRS-HPLLLSSVERNRQE--GQRXXXXXXXXXVERRSRSAPPVTWPTAGGGGPAVDPGSYVKLHL 249
            RL SLEGFAAL +LRELDVS N VQ ML                XXXXXXXXXXXXXXXXXXXXXXX  T+ D+RALSLN+ LRRLR++GNP+CS GV  + ++++ + HL+PG  LL G       +PP  L LS +   P               HH H+  R+   P R    P ++ S  R                    D+S+ RRWRD S+ +G+S +P       +      G R      XXX         P    T GGGGP V PGSY ++ +
Sbjct:  224 RLASLEGFAALPNLRELDVSHNSVQDMLGLGSNVNLRVLRISYNXXXXXXXXXXXXXXXXXXXXXXXLKTKEDVRALSLNAALRRLRIEGNPYCSTGV-QHGTYQIALQHLLPGMRLLDG-------KPPQVLSLSLSSTMPLXXXXXXXXXGKPADHHRHNSRRM---PHRTSRGPPSSCSPDRRGSGSIREGFMAASSLDFVGDLSVERRWRD-SAVAGKSLYPQFAPDSHQRAAASGGVRGGARARXXXXXXXXXGREPCIKVTTGGGGPTVAPGSYAEIFV 496
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BLAST of mRNA_H-paniculata_contig38236.10021.1 vs. uniprot
Match: D8LKE3_ECTSI (Hypothetical leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKE3_ECTSI)

HSP 1 Score: 96.3 bits (238), Expect = 5.360e-19
Identity = 125/279 (44.80%), Postives = 155/279 (55.56%), Query Frame = 0 
Query:    1 RLTSLEGFAALHSLRELDVSQNGVQSMLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTQSDMRALSLNSGLRRLRMDGNPFCSIGVPSNQSFEVYMHHLMPGTTLLGGASSSSAIQPPPALPLSANMEYP--------------SHHPHHDHRV----------LSSPQRNYA---QPGTAFSRARD---DISIARRWRDISSTSGRSHPLLLSSVERNRQEGQRXXXXXXXXXVERRSRSAPPVTWPTAGGGGPAVDPGSYVKLHL 249
            RL SLEGFAAL +LRELDVS        XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX   T+ D+RALSLN+ LRRLR++GNP+CS GV  + ++++ + HL+PG +LL G +       PP L LS +   P               HH H+  R+            SP R  +   + G   S + D   D+S+ RRWRD S+ +GRS     S      + G R              R   P    T GGGGP V PGSY ++ +
Sbjct:  171 RLASLEGFAALPNLRELDVSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLLKTKVDVRALSLNAALRRLRIEGNPYCSTGV-QHGTYQIALQHLLPGMSLLDGKA-------PPVLSLSLSSTMPLPXXXXXXXXGKPGDHHRHNSRRMPHRTSRGTPSSCSPDRRGSGSIREGFMASSSLDFVGDLSVERRWRD-SAVAGRSQFTPDSHQRAVARGGVRGGVRVRGGGDGNGGRGREPCIKVTTGGGGPTVAPGSYAEIFV 440
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig38236.10021.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JHT2_9PHAE3.260e-2140.35Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LKE3_ECTSI5.360e-1944.80Hypothetical leucine rich repeat protein n=1 Tax=E... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 195..215
NoneNo IPR availableSMARTSM00365LRR_sd22_2coord: 33..54
e-value: 0.013
score: 24.6
coord: 11..32
e-value: 21.0
score: 13.0
NoneNo IPR availablePANTHERPTHR15454NISCHARIN RELATEDcoord: 1..134
NoneNo IPR availablePANTHERPTHR15454:SF7SD03973Pcoord: 1..134
NoneNo IPR availableSUPERFAMILY52058L domain-likecoord: 2..120
IPR025875Leucine rich repeat 4PFAMPF12799LRR_4coord: 35..68
e-value: 4.1E-6
score: 27.0
IPR032675Leucine-rich repeat domain superfamilyGENE3D3.80.10.10coord: 1..118
e-value: 2.3E-20
score: 74.3
IPR001611Leucine-rich repeatPROSITEPS51450LRRcoord: 35..56
score: 9.052
IPR001611Leucine-rich repeatPROSITEPS51450LRRcoord: 57..78
score: 5.656
IPR001611Leucine-rich repeatPROSITEPS51450LRRcoord: 13..34
score: 6.549
IPR001611Leucine-rich repeatPROSITEPS51450LRRcoord: 82..103
score: 4.863

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig38236contigH-paniculata_contig38236:396..1656 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig38236.10021.1mRNA_H-paniculata_contig38236.10021.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig38236 396..1656 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig38236.10021.1 ID=prot_H-paniculata_contig38236.10021.1|Name=mRNA_H-paniculata_contig38236.10021.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=249bp
RLTSLEGFAALHSLRELDVSQNGVQSMLGLASNKELKVLRISHNRIRRIE
GLEKLRLLEEVDLSYNLLRTQSDMRALSLNSGLRRLRMDGNPFCSIGVPS
NQSFEVYMHHLMPGTTLLGGASSSSAIQPPPALPLSANMEYPSHHPHHDH
RVLSSPQRNYAQPGTAFSRARDDISIARRWRDISSTSGRSHPLLLSSVER
NRQEGQRQRQRQRSRSVERRSRSAPPVTWPTAGGGGPAVDPGSYVKLHL
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR025875Leu-rich_rpt_4
IPR032675LRR_dom_sf
IPR001611Leu-rich_rpt