mRNA_H-paniculata_contig38236.10021.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig38236.10021.1
Unique NamemRNA_H-paniculata_contig38236.10021.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig38236.10021.1 vs. uniprot
Match: A0A6H5JHT2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHT2_9PHAE)

HSP 1 Score: 102 bits (255), Expect = 3.260e-21
Identity = 115/285 (40.35%), Postives = 145/285 (50.88%), Query Frame = 1 
Query:    1 RLTSLEGFAALHSLRELDVSQNGVQSMLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTQSDMRALSLNSGLRRLRMDGNPFCSIGVPSNQSFEVYMHHLMPGTTLLGGASSSSAIQPPPALPLSANMEYP--------------SHHPHHDHRVLSSPQRNYAQPGTAFSRAR-------------------DDISIARRWRDISSTSGRS-HPLLLSSVERNRQE--GQRXXXXXXXXXVERRSRSAPPVTWPTAGGGGPAVDPGSYVKLHL 747
            RL SLEGFAAL +LRELDVS N VQ ML                XXXXXXXXXXXXXXXXXXXXXXX  T+ D+RALSLN+ LRRLR++GNP+CS GV  + ++++ + HL+PG  LL G       +PP  L LS +   P               HH H+  R+   P R    P ++ S  R                    D+S+ RRWRD S+ +G+S +P       +      G R      XXX         P    T GGGGP V PGSY ++ +
Sbjct:  224 RLASLEGFAALPNLRELDVSHNSVQDMLGLGSNVNLRVLRISYNXXXXXXXXXXXXXXXXXXXXXXXLKTKEDVRALSLNAALRRLRIEGNPYCSTGV-QHGTYQIALQHLLPGMRLLDG-------KPPQVLSLSLSSTMPLXXXXXXXXXGKPADHHRHNSRRM---PHRTSRGPPSSCSPDRRGSGSIREGFMAASSLDFVGDLSVERRWRD-SAVAGKSLYPQFAPDSHQRAAASGGVRGGARARXXXXXXXXXGREPCIKVTTGGGGPTVAPGSYAEIFV 496
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BLAST of mRNA_H-paniculata_contig38236.10021.1 vs. uniprot
Match: D8LKE3_ECTSI (Hypothetical leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKE3_ECTSI)

HSP 1 Score: 96.3 bits (238), Expect = 5.360e-19
Identity = 125/279 (44.80%), Postives = 155/279 (55.56%), Query Frame = 1 
Query:    1 RLTSLEGFAALHSLRELDVSQNGVQSMLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTQSDMRALSLNSGLRRLRMDGNPFCSIGVPSNQSFEVYMHHLMPGTTLLGGASSSSAIQPPPALPLSANMEYP--------------SHHPHHDHRV----------LSSPQRNYA---QPGTAFSRARD---DISIARRWRDISSTSGRSHPLLLSSVERNRQEGQRXXXXXXXXXVERRSRSAPPVTWPTAGGGGPAVDPGSYVKLHL 747
            RL SLEGFAAL +LRELDVS        XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX   T+ D+RALSLN+ LRRLR++GNP+CS GV  + ++++ + HL+PG +LL G +       PP L LS +   P               HH H+  R+            SP R  +   + G   S + D   D+S+ RRWRD S+ +GRS     S      + G R              R   P    T GGGGP V PGSY ++ +
Sbjct:  171 RLASLEGFAALPNLRELDVSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLLKTKVDVRALSLNAALRRLRIEGNPYCSTGV-QHGTYQIALQHLLPGMSLLDGKA-------PPVLSLSLSSTMPLPXXXXXXXXGKPGDHHRHNSRRMPHRTSRGTPSSCSPDRRGSGSIREGFMASSSLDFVGDLSVERRWRD-SAVAGRSQFTPDSHQRAVARGGVRGGVRVRGGGDGNGGRGREPCIKVTTGGGGPTVAPGSYAEIFV 440
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig38236.10021.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JHT2_9PHAE3.260e-2140.35Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LKE3_ECTSI5.360e-1944.80Hypothetical leucine rich repeat protein n=1 Tax=E... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig38236contigH-paniculata_contig38236:396..1656 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score99.4
Seed ortholog evalue2.6e-18
Seed eggNOG ortholog2880.D8LKE3
KEGG koko:K16606,ko:K19750
Hectar predicted targeting categoryother localisation
EggNOG free text desc.axoneme assembly
EggNOG OGsCOG4886@1,KOG0531@2759
Ec32 ortholog descriptionHypothetical leucine rich repeat protein
Ec32 orthologEc-16_002670.1
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04812
Exons2
Model size747
Cds size747
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930175.1273456-CDS-H-paniculata_contig38236:395..5751622930175.1273456-CDS-H-paniculata_contig38236:395..575Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig38236 396..575 +
1691481177.7618713-CDS-H-paniculata_contig38236:395..5751691481177.7618713-CDS-H-paniculata_contig38236:395..575Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig38236 396..575 +
1622930175.1438527-CDS-H-paniculata_contig38236:1089..16561622930175.1438527-CDS-H-paniculata_contig38236:1089..1656Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig38236 1090..1656 +
1691481177.7716367-CDS-H-paniculata_contig38236:1089..16561691481177.7716367-CDS-H-paniculata_contig38236:1089..1656Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig38236 1090..1656 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig38236.10021.1prot_H-paniculata_contig38236.10021.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig38236 396..1656 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig38236.10021.1

>prot_H-paniculata_contig38236.10021.1 ID=prot_H-paniculata_contig38236.10021.1|Name=mRNA_H-paniculata_contig38236.10021.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=249bp
RLTSLEGFAALHSLRELDVSQNGVQSMLGLASNKELKVLRISHNRIRRIE
GLEKLRLLEEVDLSYNLLRTQSDMRALSLNSGLRRLRMDGNPFCSIGVPS
NQSFEVYMHHLMPGTTLLGGASSSSAIQPPPALPLSANMEYPSHHPHHDH
RVLSSPQRNYAQPGTAFSRARDDISIARRWRDISSTSGRSHPLLLSSVER
NRQEGQRQRQRQRSRSVERRSRSAPPVTWPTAGGGGPAVDPGSYVKLHL
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mRNA from alignment at H-paniculata_contig38236:396..1656+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig38236.10021.1 ID=mRNA_H-paniculata_contig38236.10021.1|Name=mRNA_H-paniculata_contig38236.10021.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1261bp|location=Sequence derived from alignment at H-paniculata_contig38236:396..1656+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AGGCTCACATCCCTGGAAGGATTTGCGGCGTTGCACAGCTTACGAGAGCT
GGATGTGAGCCAAAATGGAGTACAAAGCATGCTGGGTTTGGCTTCCAACA
AAGAGCTGAAGGTCCTCAGAATATCGCACAATCGAATACGCCGAATAGAG
GGGCTGGAGAAGCTTAGGCTTTTGGAAGAGGTAAGCAAAACTGTATTGCA
GCCGACGTTGAACACACAATAAATTAGCGAGCACTAGAGCGGAATAGTTT
TTCAAGCTGCAACGCGCTGATCTTTCCGCAGCGCGAAGCAAGAGCAGTCC
GCTGCGGATAAAAATGATTTGTTCGGACTATGATTCAATCGCTTTGGATC
GACATGCGGCTGTGGTATATCGCATTTTGTGCATCACAAAGGACACCGCG
CATCGATTGATACATGACCCCACAAAGCAATTTTCTCGTCAAATCGCCGA
CTTGCCGTACGCCGCGACCCTCCGCAGAGCAGGCGTTGTGTATAGGTATC
CCTGCAAGGAATAAAGATTGGTAAGTTTGTGCTCCAGCTGGTATCGGCAA
TTCGATAACTCTTCAAATAACTAAAATCCTGATCGACGGAGCCTCGACAT
ACATTACTTGACGGGCCGTAGCTCCAACCTTTGACACCCCAAAGTCCCTA
GTAACATTTGCTATACTCACGTATTCCCTTGCACCGTTTGTCAGGTGGAT
TTGTCTTACAATTTGCTTAGGACCCAAAGCGACATGCGAGCGCTCTCGCT
TAACTCTGGCCTGCGTCGACTTCGTATGGACGGTAATCCTTTTTGCAGCA
TAGGTGTCCCATCCAACCAAAGTTTCGAGGTATACATGCACCACCTCATG
CCGGGGACAACTCTTCTCGGCGGTGCATCATCGTCTTCGGCGATACAGCC
ACCACCTGCTCTACCTCTATCTGCAAACATGGAATACCCTTCACATCATC
CACACCACGACCACCGAGTACTCAGCTCACCACAGCGTAATTATGCGCAG
CCCGGAACAGCGTTCAGCAGGGCCCGGGATGACATTAGCATAGCACGGCG
TTGGCGAGACATTTCTTCGACATCGGGACGTAGTCACCCTTTGCTATTGT
CATCGGTCGAACGCAATCGACAAGAAGGGCAACGGCAACGACAACGACAA
CGATCCCGGTCTGTTGAACGGAGAAGTCGGAGCGCGCCCCCGGTTACTTG
GCCCACGGCGGGAGGCGGCGGACCTGCGGTAGATCCTGGATCGTACGTAA
AATTACATTTA
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Coding sequence (CDS) from alignment at H-paniculata_contig38236:396..1656+

>mRNA_H-paniculata_contig38236.10021.1 ID=mRNA_H-paniculata_contig38236.10021.1|Name=mRNA_H-paniculata_contig38236.10021.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1494bp|location=Sequence derived from alignment at H-paniculata_contig38236:396..1656+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AGGCTCACATCCCTGGAAGGATTTGCGGCGTTGCACAGCTTACGAGAGCT
GGATGTGAGCCAAAATGGAGTACAAAGCATGCTGGGTTTGGCTTCCAACA
AAGAGCTGAAGGTCCTCAGAATATCGCACAATCGAATACGCCGAATAGAG
GGGCTGGAGAAGCTTAGGCTTTTGGAAGAGAGGCTCACATCCCTGGAAGG
ATTTGCGGCGTTGCACAGCTTACGAGAGCTGGATGTGAGCCAAAATGGAG
TACAAAGCATGCTGGGTTTGGCTTCCAACAAAGAGCTGAAGGTCCTCAGA
ATATCGCACAATCGAATACGCCGAATAGAGGGGCTGGAGAAGCTTAGGCT
TTTGGAAGAGGTGGATTTGTCTTACAATTTGCTTAGGACCCAAAGCGACA
TGCGAGCGCTCTCGCTTAACTCTGGCCTGCGTCGACTTCGTATGGACGGT
AATCCTTTTTGCAGCATAGGTGTCCCATCCAACCAAAGTTTCGAGGTATA
CATGCACCACCTCATGCCGGGGACAACTCTTCTCGGCGGTGCATCATCGT
CTTCGGCGATACAGCCACCACCTGCTCTACCTCTATCTGCAAACATGGAA
TACCCTTCACATCATCCACACCACGACCACCGAGTACTCAGCTCACCACA
GCGTAATTATGCGCAGCCCGGAACAGCGTTCAGCAGGGCCCGGGATGACA
TTAGCATAGCACGGCGTTGGCGAGACATTTCTTCGACATCGGGACGTAGT
CACCCTTTGCTATTGTCATCGGTCGAACGCAATCGACAAGAAGGGCAACG
GCAACGACAACGACAACGATCCCGGTCTGTTGAACGGAGAAGTCGGAGCG
CGCCCCCGGTTACTTGGCCCACGGCGGGAGGCGGCGGACCTGCGGTAGAT
CCTGGATCGTACGTAAAATTACATTTAGTGGATTTGTCTTACAATTTGCT
TAGGACCCAAAGCGACATGCGAGCGCTCTCGCTTAACTCTGGCCTGCGTC
GACTTCGTATGGACGGTAATCCTTTTTGCAGCATAGGTGTCCCATCCAAC
CAAAGTTTCGAGGTATACATGCACCACCTCATGCCGGGGACAACTCTTCT
CGGCGGTGCATCATCGTCTTCGGCGATACAGCCACCACCTGCTCTACCTC
TATCTGCAAACATGGAATACCCTTCACATCATCCACACCACGACCACCGA
GTACTCAGCTCACCACAGCGTAATTATGCGCAGCCCGGAACAGCGTTCAG
CAGGGCCCGGGATGACATTAGCATAGCACGGCGTTGGCGAGACATTTCTT
CGACATCGGGACGTAGTCACCCTTTGCTATTGTCATCGGTCGAACGCAAT
CGACAAGAAGGGCAACGGCAACGACAACGACAACGATCCCGGTCTGTTGA
ACGGAGAAGTCGGAGCGCGCCCCCGGTTACTTGGCCCACGGCGGGAGGCG
GCGGACCTGCGGTAGATCCTGGATCGTACGTAAAATTACATTTA
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