prot_H-paniculata_contig37867.9936.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig37867.9936.1
Unique Nameprot_H-paniculata_contig37867.9936.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length136
Homology
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BLAST of mRNA_H-paniculata_contig37867.9936.1 vs. uniprot
Match: A0A0P1AC26_PLAHL (Polyprotein n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1AC26_PLAHL)

HSP 1 Score: 52.0 bits (123), Expect = 2.960e-5
Identity = 40/131 (30.53%), Postives = 59/131 (45.04%), Query Frame = 0 
Query:    4 CFQCNEPGHLKMNCPQRICPICKGIGHGESSHRLSAMFSSDGFRDIVEHGFTVRVAGQGEFA--SVIESIEEDKPVPVDGCEE-FWVADSGATAHMTPSNELMFDYETCG-NLFVTVANGETLPIEGYGKM 130
            C  C+  GH+K +CP ++                      D   D V   F V V G    +  S+I S   D  + V       W+ DSGAT+HMTP  + +F+YE    N+ VT+A+G+ L + G G +
Sbjct:  116 CLSCDRIGHMKRDCPNKV---------------------DDSDDDAV---FAVSVLGPVNESENSMITSAMVDTALAVGKDRSPSWLIDSGATSHMTPYRDDLFEYEIVNTNIEVTIADGKNLRVAGTGSV 222
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BLAST of mRNA_H-paniculata_contig37867.9936.1 vs. uniprot
Match: A0A8J6LGS5_TENMO (Anoctamin n=1 Tax=Tenebrio molitor TaxID=7067 RepID=A0A8J6LGS5_TENMO)

HSP 1 Score: 52.4 bits (124), Expect = 3.850e-5
Identity = 38/132 (28.79%), Postives = 55/132 (41.67%), Query Frame = 0 
Query:    2 RVCFQCNEPGHLKMNCPQRICPICKGIGHGESSHRLSAMFSSDGFRDIVEHGFTVRVAGQGEFASVIESIEEDKPVPVDGCEEFWVADSGATAHMTPSNELMFDYET-CGNLFVTVANGETLPIEGYGKMLV 132
            R CF+C++PGH+  NCP +     K   + +   +  A               T R  G   F SV + I E          E W+ADSGA+AHMT +     +Y        + V N E +   G G++ V
Sbjct: 1339 RKCFKCHQPGHIAKNCPNK-----KATANSDVREKKGAN--------------TSRAEGDA-FVSVFDEIAES---------EMWLADSGASAHMTRNRNYFVNYTPFAAPKVICVGNNEKILAYGCGQINV 1441
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig37867.9936.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A0P1AC26_PLAHL2.960e-530.53Polyprotein n=1 Tax=Plasmopara halstedii TaxID=478... [more]
A0A8J6LGS5_TENMO3.850e-528.79Anoctamin n=1 Tax=Tenebrio molitor TaxID=7067 RepI... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 135..136
NoneNo IPR availableGENE3D4.10.60.10coord: 1..35
e-value: 3.7E-6
score: 28.7
IPR001878Zinc finger, CCHC-typeSMARTSM00343c2hcfinal6coord: 3..19
e-value: 0.002
score: 27.4
IPR001878Zinc finger, CCHC-typePFAMPF00098zf-CCHCcoord: 2..19
e-value: 1.5E-4
score: 21.7
IPR001878Zinc finger, CCHC-typePROSITEPS50158ZF_CCHCcoord: 4..19
score: 9.851
IPR036875Zinc finger, CCHC-type superfamilySUPERFAMILY57756Retrovirus zinc finger-like domainscoord: 2..31

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig37867contigH-paniculata_contig37867:1433..1840 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig37867.9936.1mRNA_H-paniculata_contig37867.9936.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig37867 1433..1840 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig37867.9936.1 ID=prot_H-paniculata_contig37867.9936.1|Name=mRNA_H-paniculata_contig37867.9936.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=136bp
TRVCFQCNEPGHLKMNCPQRICPICKGIGHGESSHRLSAMFSSDGFRDIV
EHGFTVRVAGQGEFASVIESIEEDKPVPVDGCEEFWVADSGATAHMTPSN
ELMFDYETCGNLFVTVANGETLPIEGYGKMLVWTKD
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001878Znf_CCHC
IPR036875Znf_CCHC_sf