mRNA_H-paniculata_contig37867.9936.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig37867.9936.1
Unique NamemRNA_H-paniculata_contig37867.9936.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig37867.9936.1 vs. uniprot
Match: A0A0P1AC26_PLAHL (Polyprotein n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1AC26_PLAHL)

HSP 1 Score: 52.0 bits (123), Expect = 2.960e-5
Identity = 40/131 (30.53%), Postives = 59/131 (45.04%), Query Frame = 1 
Query:   10 CFQCNEPGHLKMNCPQRICPICKGIGHGESSHRLSAMFSSDGFRDIVEHGFTVRVAGQGEFA--SVIESIEEDKPVPVDGCEE-FWVADSGATAHMTPSNELMFDYETCG-NLFVTVANGETLPIEGYGKM 390
            C  C+  GH+K +CP ++                      D   D V   F V V G    +  S+I S   D  + V       W+ DSGAT+HMTP  + +F+YE    N+ VT+A+G+ L + G G +
Sbjct:  116 CLSCDRIGHMKRDCPNKV---------------------DDSDDDAV---FAVSVLGPVNESENSMITSAMVDTALAVGKDRSPSWLIDSGATSHMTPYRDDLFEYEIVNTNIEVTIADGKNLRVAGTGSV 222
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BLAST of mRNA_H-paniculata_contig37867.9936.1 vs. uniprot
Match: A0A438GAQ9_VITVI (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Vitis vinifera TaxID=29760 RepID=A0A438GAQ9_VITVI)

HSP 1 Score: 52.4 bits (124), Expect = 3.740e-5
Identity = 39/132 (29.55%), Postives = 62/132 (46.97%), Query Frame = 1 
Query:    1 TRVCFQCNEPGHLKMNCPQRICPICKGIGHGESSHRLSAMFS--SDGFRDIVEHGFTVRVAGQGEF--ASVIESIEEDKPVPVDGCEEFWVADSGATAHMTPSNELMFDYETCGNLFVTVANGETLPIEGYG 384
            T VCF C+E GH K NC +++    + I     +   +A FS  SD    +    F+     Q     ++ + ++ E     +      W+ DSGAT HMT +++    + T     VTVA+G T  I+G+G
Sbjct:  163 TIVCFYCHEAGHTKKNC-RKLQNRNRRIQTANVATSDTATFSDSSDKIVTMTAEEFSKYSQYQDALKASTPVSALAESGKTCLVSSSNKWIIDSGATDHMTGNHKTFSTFRTHSTPPVTVADGSTYEIKGFG 293
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BLAST of mRNA_H-paniculata_contig37867.9936.1 vs. uniprot
Match: A0A8J6LGS5_TENMO (Anoctamin n=1 Tax=Tenebrio molitor TaxID=7067 RepID=A0A8J6LGS5_TENMO)

HSP 1 Score: 52.4 bits (124), Expect = 3.850e-5
Identity = 38/132 (28.79%), Postives = 55/132 (41.67%), Query Frame = 1 
Query:    4 RVCFQCNEPGHLKMNCPQRICPICKGIGHGESSHRLSAMFSSDGFRDIVEHGFTVRVAGQGEFASVIESIEEDKPVPVDGCEEFWVADSGATAHMTPSNELMFDYET-CGNLFVTVANGETLPIEGYGKMLV 396
            R CF+C++PGH+  NCP +     K   + +   +  A               T R  G   F SV + I E          E W+ADSGA+AHMT +     +Y        + V N E +   G G++ V
Sbjct: 1339 RKCFKCHQPGHIAKNCPNK-----KATANSDVREKKGAN--------------TSRAEGDA-FVSVFDEIAES---------EMWLADSGASAHMTRNRNYFVNYTPFAAPKVICVGNNEKILAYGCGQINV 1441
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig37867.9936.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A0P1AC26_PLAHL2.960e-530.53Polyprotein n=1 Tax=Plasmopara halstedii TaxID=478... [more]
A0A438GAQ9_VITVI3.740e-529.55Retrovirus-related Pol polyprotein from transposon... [more]
A0A8J6LGS5_TENMO3.850e-528.79Anoctamin n=1 Tax=Tenebrio molitor TaxID=7067 RepI... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig37867contigH-paniculata_contig37867:1433..1840 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size408
Cds size408
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930161.9677548-CDS-H-paniculata_contig37867:1432..18401622930161.9677548-CDS-H-paniculata_contig37867:1432..1840Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig37867 1433..1840 -
1691481172.7412791-CDS-H-paniculata_contig37867:1432..18401691481172.7412791-CDS-H-paniculata_contig37867:1432..1840Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig37867 1433..1840 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig37867.9936.1prot_H-paniculata_contig37867.9936.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig37867 1433..1840 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig37867.9936.1

>prot_H-paniculata_contig37867.9936.1 ID=prot_H-paniculata_contig37867.9936.1|Name=mRNA_H-paniculata_contig37867.9936.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=136bp
TRVCFQCNEPGHLKMNCPQRICPICKGIGHGESSHRLSAMFSSDGFRDIV
EHGFTVRVAGQGEFASVIESIEEDKPVPVDGCEEFWVADSGATAHMTPSN
ELMFDYETCGNLFVTVANGETLPIEGYGKMLVWTKD
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mRNA from alignment at H-paniculata_contig37867:1433..1840-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig37867.9936.1 ID=mRNA_H-paniculata_contig37867.9936.1|Name=mRNA_H-paniculata_contig37867.9936.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=408bp|location=Sequence derived from alignment at H-paniculata_contig37867:1433..1840- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ACTCGTGTTTGTTTTCAATGTAATGAGCCAGGTCATCTGAAGATGAATTG
TCCTCAGCGCATATGTCCGATCTGCAAAGGGATCGGTCATGGCGAGAGTA
GTCACAGGTTGTCAGCAATGTTCTCTTCGGACGGGTTCAGGGACATTGTT
GAACACGGTTTCACGGTCAGAGTGGCAGGGCAGGGCGAATTTGCTTCGGT
AATTGAGTCTATTGAAGAGGACAAGCCAGTACCAGTAGATGGTTGTGAGG
AGTTTTGGGTGGCCGACAGTGGGGCTACGGCCCACATGACTCCGTCTAAC
GAATTAATGTTTGATTACGAAACCTGCGGTAATTTGTTTGTGACGGTGGC
TAACGGCGAAACACTTCCGATTGAGGGATATGGTAAGATGTTGGTATGGA
CGAAGGAT
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Coding sequence (CDS) from alignment at H-paniculata_contig37867:1433..1840-

>mRNA_H-paniculata_contig37867.9936.1 ID=mRNA_H-paniculata_contig37867.9936.1|Name=mRNA_H-paniculata_contig37867.9936.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=816bp|location=Sequence derived from alignment at H-paniculata_contig37867:1433..1840- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ACTCGTGTTTGTTTTCAATGTAATGAGCCAGGTCATCTGAAGATGAATTG
TCCTCAGCGCATATGTCCGATCTGCAAAGGGATCGGTCATGGCGAGAGTA
GTCACAGGTTGTCAGCAATGTTCTCTTCGGACGGGTTCAGGGACATTGTT
GAACACGGTTTCACGGTCAGAGTGGCAGGGCAGGGCGAATTTGCTTCGGT
AATTGAGTCTATTGAAGAGGACAAGCCAGTACCAGTAGATGGTTGTGAGG
AGTTTTGGGTGGCCGACAGTGGGGCTACGGCCCACATGACTCCGTCTAAC
GAATTAATGTTTGATTACGAAACCTGCGGTAATTTGTTTGTGACGGTGGC
TAACGGCGAAACACTTCCGATTGAGGGATATGGTAAGATGTTGGTATGGA
CGAAGGATACTCGTGTTTGTTTTCAATGTAATGAGCCAGGTCATCTGAAG
ATGAATTGTCCTCAGCGCATATGTCCGATCTGCAAAGGGATCGGTCATGG
CGAGAGTAGTCACAGGTTGTCAGCAATGTTCTCTTCGGACGGGTTCAGGG
ACATTGTTGAACACGGTTTCACGGTCAGAGTGGCAGGGCAGGGCGAATTT
GCTTCGGTAATTGAGTCTATTGAAGAGGACAAGCCAGTACCAGTAGATGG
TTGTGAGGAGTTTTGGGTGGCCGACAGTGGGGCTACGGCCCACATGACTC
CGTCTAACGAATTAATGTTTGATTACGAAACCTGCGGTAATTTGTTTGTG
ACGGTGGCTAACGGCGAAACACTTCCGATTGAGGGATATGGTAAGATGTT
GGTATGGACGAAGGAT
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