prot_H-paniculata_contig37432.9855.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_H-paniculata_contig37432.9855.1
Unique Name	prot_H-paniculata_contig37432.9855.1
Type	polypeptide
Organism	Halopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length	82

Homology

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BLAST of mRNA_H-paniculata_contig37432.9855.1 vs. uniprot
Match: A0A6H5KKK1_9PHAE (Integrase catalytic domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKK1_9PHAE)

HSP 1 Score: 85.1 bits (209), Expect = 1.790e-17
Identity = 45/81 (55.56%), Postives = 54/81 (66.67%), Query Frame = 0

Query:    1 PIPYASACASQYSNVWADAMASEFEGLNAAGTF-LVDSVPVNRNVLGAKWVFKWKTDAQGTIVKGKARLVAKDFSQVEGVD 80
            P  Y  A  S+Y+ +W  AM++E EGL  AGTF L   VP++ NV+ A+WVFKWK D  G IVK KARLVAK F Q  GVD
Sbjct:  448 PDSYQEAQRSKYAKIWEGAMSAEVEGLIRAGTFTLAAKVPISCNVIDARWVFKWKADETGKIVKAKARLVAKGFKQKYGVD 528

[Close]

BLAST of mRNA_H-paniculata_contig37432.9855.1 vs. uniprot
Match: A0A6H5KPV1_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPV1_9PHAE)

HSP 1 Score: 84.7 bits (208), Expect = 2.410e-17
Identity = 45/81 (55.56%), Postives = 54/81 (66.67%), Query Frame = 0

Query:    1 PIPYASACASQYSNVWADAMASEFEGLNAAGTF-LVDSVPVNRNVLGAKWVFKWKTDAQGTIVKGKARLVAKDFSQVEGVD 80
            P  Y  A  S+++ VW  AM++EFEGL  AGTF L   VP+  NV+ A+WVFKWK D  G IVK KARLVAK F Q  G+D
Sbjct:  167 PDSYQEARQSKHAEVWDVAMSAEFEGLVRAGTFSLAVKVPIGCNVIDARWVFKWKADETGKIVKAKARLVAKGFKQKHGID 247

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BLAST of mRNA_H-paniculata_contig37432.9855.1 vs. uniprot
Match: A0A6H5JRL9_9PHAE (Integrase catalytic domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRL9_9PHAE)

HSP 1 Score: 84.7 bits (208), Expect = 2.460e-17
Identity = 45/81 (55.56%), Postives = 53/81 (65.43%), Query Frame = 0

Query:    1 PIPYASACASQYSNVWADAMASEFEGLNAAGTF-LVDSVPVNRNVLGAKWVFKWKTDAQGTIVKGKARLVAKDFSQVEGVD 80
            P  Y  A  S+Y+ +W  AM++E EGL  AGTF L   VP+  NV+ A+WVFKWK D  G IVK KARLVAK F Q  GVD
Sbjct:  715 PDSYQEAQRSKYAKIWEGAMSAEVEGLIRAGTFTLAAKVPIGCNVIDARWVFKWKADETGKIVKAKARLVAKGFKQKYGVD 795

[Close]

BLAST of mRNA_H-paniculata_contig37432.9855.1 vs. uniprot
Match: A0A6H5KLE6_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KLE6_9PHAE)

HSP 1 Score: 81.6 bits (200), Expect = 7.310e-17
Identity = 42/83 (50.60%), Postives = 55/83 (66.27%), Query Frame = 0

Query:    1 PIPYASACASQYSNVWADAMASEFEGLNAAGTF-LVDSVPVNRNVLGAKWVFKWKTDAQGTIVKGKARLVAKDFSQVEGVDSF 82
            P  Y  A  S+YS++W  A+++EF GL  AGTF L   +P+  NV+ A+WV+KWK +  G I+K KARLVAK F Q  GVD F
Sbjct:   15 PSSYNEARQSKYSSIWDKAISAEFGGLLRAGTFALAVKIPIGCNVIDARWVYKWKANETGKILKAKARLVAKGFKQKHGVDYF 97

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BLAST of mRNA_H-paniculata_contig37432.9855.1 vs. uniprot
Match: A0A6H5L3I1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L3I1_9PHAE)

HSP 1 Score: 82.0 bits (201), Expect = 2.180e-16
Identity = 44/81 (54.32%), Postives = 52/81 (64.20%), Query Frame = 0

Query:    1 PIPYASACASQYSNVWADAMASEFEGLNAAGTF-LVDSVPVNRNVLGAKWVFKWKTDAQGTIVKGKARLVAKDFSQVEGVD 80
            P  Y  A  S+Y+ +W  A ++E EGL  AGTF L   VP+  NV+ A+WVFKWK D  G IVK KARLVAK F Q  GVD
Sbjct:  679 PGSYEEAQRSKYAKIWEGARSAEVEGLMRAGTFTLAVKVPIGCNVIDARWVFKWKADETGKIVKAKARLVAKGFKQKYGVD 759

[Close]

BLAST of mRNA_H-paniculata_contig37432.9855.1 vs. uniprot
Match: A0A6H5KZH7_9PHAE (Uncharacterized protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZH7_9PHAE)

HSP 1 Score: 82.0 bits (201), Expect = 2.190e-16
Identity = 44/81 (54.32%), Postives = 52/81 (64.20%), Query Frame = 0

Query:    1 PIPYASACASQYSNVWADAMASEFEGLNAAGTF-LVDSVPVNRNVLGAKWVFKWKTDAQGTIVKGKARLVAKDFSQVEGVD 80
            P  Y  A  S+Y+ +W  A ++E EGL  AGTF L   VP+  NV+ A+WVFKWK D  G IVK KARLVAK F Q  GVD
Sbjct:  889 PGSYEEAQRSKYAKIWEGARSAEVEGLMRAGTFTLAVKVPIGCNVIDARWVFKWKADETGKIVKAKARLVAKGFKQKYGVD 969

[Close]

BLAST of mRNA_H-paniculata_contig37432.9855.1 vs. uniprot
Match: A0A6H5JV80_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JV80_9PHAE)

HSP 1 Score: 81.3 bits (199), Expect = 4.000e-16
Identity = 43/81 (53.09%), Postives = 52/81 (64.20%), Query Frame = 0

Query:    1 PIPYASACASQYSNVWADAMASEFEGLNAAGTF-LVDSVPVNRNVLGAKWVFKWKTDAQGTIVKGKARLVAKDFSQVEGVD 80
            P  Y  A  S+++ +W  AM++E EGL  AGTF L   +P   NV+ A+WVFKWK D  G IVK KARLVAK F Q  GVD
Sbjct:  213 PGSYQEALRSKHATIWDKAMSAEVEGLIRAGTFTLAAKIPEGCNVIDARWVFKWKADETGKIVKAKARLVAKGFKQKHGVD 293

[Close]

BLAST of mRNA_H-paniculata_contig37432.9855.1 vs. uniprot
Match: A0A6H5LDZ0_9PHAE (CCHC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LDZ0_9PHAE)

HSP 1 Score: 81.3 bits (199), Expect = 4.030e-16
Identity = 43/81 (53.09%), Postives = 52/81 (64.20%), Query Frame = 0

Query:    1 PIPYASACASQYSNVWADAMASEFEGLNAAGTF-LVDSVPVNRNVLGAKWVFKWKTDAQGTIVKGKARLVAKDFSQVEGVD 80
            P  Y  A  S+++ +W  AM++E EGL  AGTF L   +P   NV+ A+WVFKWK D  G IVK KARLVAK F Q  GVD
Sbjct:  418 PGSYQEALRSKHATIWDKAMSAEVEGLIRAGTFTLAAKIPEGCNVIDARWVFKWKADETGKIVKAKARLVAKGFKQKHGVD 498

[Close]

BLAST of mRNA_H-paniculata_contig37432.9855.1 vs. uniprot
Match: A0A6H5J594_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J594_9PHAE)

HSP 1 Score: 81.3 bits (199), Expect = 4.040e-16
Identity = 43/81 (53.09%), Postives = 52/81 (64.20%), Query Frame = 0

Query:    1 PIPYASACASQYSNVWADAMASEFEGLNAAGTF-LVDSVPVNRNVLGAKWVFKWKTDAQGTIVKGKARLVAKDFSQVEGVD 80
            P  Y  A  S+++ +W  AM++E EGL  AGTF L   +P   NV+ A+WVFKWK D  G IVK KARLVAK F Q  GVD
Sbjct:  482 PGSYQEALRSKHATIWDKAMSAEVEGLIRAGTFTLAAKIPEGCNVIDARWVFKWKADETGKIVKAKARLVAKGFKQKHGVD 562

[Close]

BLAST of mRNA_H-paniculata_contig37432.9855.1 vs. uniprot
Match: A0A6H5KHE8_9PHAE (CCHC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHE8_9PHAE)

HSP 1 Score: 81.3 bits (199), Expect = 4.040e-16
Identity = 43/81 (53.09%), Postives = 52/81 (64.20%), Query Frame = 0

Query:    1 PIPYASACASQYSNVWADAMASEFEGLNAAGTF-LVDSVPVNRNVLGAKWVFKWKTDAQGTIVKGKARLVAKDFSQVEGVD 80
            P  Y  A  S+++ +W  AM++E EGL  AGTF L   +P   NV+ A+WVFKWK D  G IVK KARLVAK F Q  GVD
Sbjct:  626 PGSYQEALRSKHATIWDKAMSAEVEGLIRAGTFTLAAKIPEGCNVIDARWVFKWKADETGKIVKAKARLVAKGFKQKHGVD 706

The following BLAST results are available for this feature:

BLAST of mRNA_H-paniculata_contig37432.9855.1 vs. uniprot

BLAST of mRNA_H-paniculata_contig37432.9855.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
A0A6H5KKK1_9PHAE	1.790e-17	55.56	Integrase catalytic domain-containing protein n=2 ...	[more]
A0A6H5KPV1_9PHAE	2.410e-17	55.56	Reverse transcriptase Ty1/copia-type domain-contai...	[more]
A0A6H5JRL9_9PHAE	2.460e-17	55.56	Integrase catalytic domain-containing protein n=2 ...	[more]
A0A6H5KLE6_9PHAE	7.310e-17	50.60	Reverse transcriptase Ty1/copia-type domain-contai...	[more]
A0A6H5L3I1_9PHAE	2.180e-16	54.32	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5KZH7_9PHAE	2.190e-16	54.32	Uncharacterized protein n=3 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5JV80_9PHAE	4.000e-16	53.09	Reverse transcriptase Ty1/copia-type domain-contai...	[more]
A0A6H5LDZ0_9PHAE	4.030e-16	53.09	CCHC-type domain-containing protein n=1 Tax=Ectoca...	[more]
A0A6H5J594_9PHAE	4.040e-16	53.09	Integrase catalytic domain-containing protein n=1 ...	[more]
A0A6H5KHE8_9PHAE	4.040e-16	53.09	CCHC-type domain-containing protein n=1 Tax=Ectoca...	[more]

Pages

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR013103	Reverse transcriptase, RNA-dependent DNA polymerase	PFAM	PF07727	RVT_2	coord: 32..80 e-value: 1.1E-8 score: 35.1
IPR039537	Retrotransposon Ty1/copia-like	PANTHER	PTHR11439	GAG-POL-RELATED RETROTRANSPOSON	coord: 7..80
None	No IPR available	PANTHER	PTHR11439:SF273		coord: 7..80

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
H-paniculata_contig37432	contig	H-paniculata_contig37432:1604..1849 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_H-paniculata_contig37432.9855.1	mRNA_H-paniculata_contig37432.9855.1	Halopteris paniculata Hal_grac_a_UBK monoicous	mRNA	H-paniculata_contig37432 1604..1849 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_H-paniculata_contig37432.9855.1 ID=prot_H-paniculata_contig37432.9855.1|Name=mRNA_H-paniculata_contig37432.9855.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=82bp
PIPYASACASQYSNVWADAMASEFEGLNAAGTFLVDSVPVNRNVLGAKWV
FKWKTDAQGTIVKGKARLVAKDFSQVEGVDSF

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR013103	RVT_2
IPR039537	Retrotran_Ty1/copia-like