mRNA_H-paniculata_contig37432.9855.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig37432.9855.1
Unique NamemRNA_H-paniculata_contig37432.9855.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig37432.9855.1 vs. uniprot
Match: A0A6H5KKK1_9PHAE (Integrase catalytic domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKK1_9PHAE)

HSP 1 Score: 85.1 bits (209), Expect = 1.790e-17
Identity = 45/81 (55.56%), Postives = 54/81 (66.67%), Query Frame = 1 
Query:    1 PIPYASACASQYSNVWADAMASEFEGLNAAGTF-LVDSVPVNRNVLGAKWVFKWKTDAQGTIVKGKARLVAKDFSQVEGVD 240
            P  Y  A  S+Y+ +W  AM++E EGL  AGTF L   VP++ NV+ A+WVFKWK D  G IVK KARLVAK F Q  GVD
Sbjct:  448 PDSYQEAQRSKYAKIWEGAMSAEVEGLIRAGTFTLAAKVPISCNVIDARWVFKWKADETGKIVKAKARLVAKGFKQKYGVD 528
[Close]
BLAST of mRNA_H-paniculata_contig37432.9855.1 vs. uniprot
Match: A0A6H5KPV1_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPV1_9PHAE)

HSP 1 Score: 84.7 bits (208), Expect = 2.410e-17
Identity = 45/81 (55.56%), Postives = 54/81 (66.67%), Query Frame = 1 
Query:    1 PIPYASACASQYSNVWADAMASEFEGLNAAGTF-LVDSVPVNRNVLGAKWVFKWKTDAQGTIVKGKARLVAKDFSQVEGVD 240
            P  Y  A  S+++ VW  AM++EFEGL  AGTF L   VP+  NV+ A+WVFKWK D  G IVK KARLVAK F Q  G+D
Sbjct:  167 PDSYQEARQSKHAEVWDVAMSAEFEGLVRAGTFSLAVKVPIGCNVIDARWVFKWKADETGKIVKAKARLVAKGFKQKHGID 247
[Close]
BLAST of mRNA_H-paniculata_contig37432.9855.1 vs. uniprot
Match: A0A6H5JRL9_9PHAE (Integrase catalytic domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRL9_9PHAE)

HSP 1 Score: 84.7 bits (208), Expect = 2.460e-17
Identity = 45/81 (55.56%), Postives = 53/81 (65.43%), Query Frame = 1 
Query:    1 PIPYASACASQYSNVWADAMASEFEGLNAAGTF-LVDSVPVNRNVLGAKWVFKWKTDAQGTIVKGKARLVAKDFSQVEGVD 240
            P  Y  A  S+Y+ +W  AM++E EGL  AGTF L   VP+  NV+ A+WVFKWK D  G IVK KARLVAK F Q  GVD
Sbjct:  715 PDSYQEAQRSKYAKIWEGAMSAEVEGLIRAGTFTLAAKVPIGCNVIDARWVFKWKADETGKIVKAKARLVAKGFKQKYGVD 795
[Close]
BLAST of mRNA_H-paniculata_contig37432.9855.1 vs. uniprot
Match: A0A6H5KLE6_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KLE6_9PHAE)

HSP 1 Score: 81.6 bits (200), Expect = 7.310e-17
Identity = 42/83 (50.60%), Postives = 55/83 (66.27%), Query Frame = 1 
Query:    1 PIPYASACASQYSNVWADAMASEFEGLNAAGTF-LVDSVPVNRNVLGAKWVFKWKTDAQGTIVKGKARLVAKDFSQVEGVDSF 246
            P  Y  A  S+YS++W  A+++EF GL  AGTF L   +P+  NV+ A+WV+KWK +  G I+K KARLVAK F Q  GVD F
Sbjct:   15 PSSYNEARQSKYSSIWDKAISAEFGGLLRAGTFALAVKIPIGCNVIDARWVYKWKANETGKILKAKARLVAKGFKQKHGVDYF 97
[Close]
BLAST of mRNA_H-paniculata_contig37432.9855.1 vs. uniprot
Match: A0A6H5L3I1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L3I1_9PHAE)

HSP 1 Score: 82.0 bits (201), Expect = 2.180e-16
Identity = 44/81 (54.32%), Postives = 52/81 (64.20%), Query Frame = 1 
Query:    1 PIPYASACASQYSNVWADAMASEFEGLNAAGTF-LVDSVPVNRNVLGAKWVFKWKTDAQGTIVKGKARLVAKDFSQVEGVD 240
            P  Y  A  S+Y+ +W  A ++E EGL  AGTF L   VP+  NV+ A+WVFKWK D  G IVK KARLVAK F Q  GVD
Sbjct:  679 PGSYEEAQRSKYAKIWEGARSAEVEGLMRAGTFTLAVKVPIGCNVIDARWVFKWKADETGKIVKAKARLVAKGFKQKYGVD 759
[Close]
BLAST of mRNA_H-paniculata_contig37432.9855.1 vs. uniprot
Match: A0A6H5KZH7_9PHAE (Uncharacterized protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZH7_9PHAE)

HSP 1 Score: 82.0 bits (201), Expect = 2.190e-16
Identity = 44/81 (54.32%), Postives = 52/81 (64.20%), Query Frame = 1 
Query:    1 PIPYASACASQYSNVWADAMASEFEGLNAAGTF-LVDSVPVNRNVLGAKWVFKWKTDAQGTIVKGKARLVAKDFSQVEGVD 240
            P  Y  A  S+Y+ +W  A ++E EGL  AGTF L   VP+  NV+ A+WVFKWK D  G IVK KARLVAK F Q  GVD
Sbjct:  889 PGSYEEAQRSKYAKIWEGARSAEVEGLMRAGTFTLAVKVPIGCNVIDARWVFKWKADETGKIVKAKARLVAKGFKQKYGVD 969
[Close]
BLAST of mRNA_H-paniculata_contig37432.9855.1 vs. uniprot
Match: A0A6H5JV80_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JV80_9PHAE)

HSP 1 Score: 81.3 bits (199), Expect = 4.000e-16
Identity = 43/81 (53.09%), Postives = 52/81 (64.20%), Query Frame = 1 
Query:    1 PIPYASACASQYSNVWADAMASEFEGLNAAGTF-LVDSVPVNRNVLGAKWVFKWKTDAQGTIVKGKARLVAKDFSQVEGVD 240
            P  Y  A  S+++ +W  AM++E EGL  AGTF L   +P   NV+ A+WVFKWK D  G IVK KARLVAK F Q  GVD
Sbjct:  213 PGSYQEALRSKHATIWDKAMSAEVEGLIRAGTFTLAAKIPEGCNVIDARWVFKWKADETGKIVKAKARLVAKGFKQKHGVD 293
[Close]
BLAST of mRNA_H-paniculata_contig37432.9855.1 vs. uniprot
Match: A0A6H5LDZ0_9PHAE (CCHC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LDZ0_9PHAE)

HSP 1 Score: 81.3 bits (199), Expect = 4.030e-16
Identity = 43/81 (53.09%), Postives = 52/81 (64.20%), Query Frame = 1 
Query:    1 PIPYASACASQYSNVWADAMASEFEGLNAAGTF-LVDSVPVNRNVLGAKWVFKWKTDAQGTIVKGKARLVAKDFSQVEGVD 240
            P  Y  A  S+++ +W  AM++E EGL  AGTF L   +P   NV+ A+WVFKWK D  G IVK KARLVAK F Q  GVD
Sbjct:  418 PGSYQEALRSKHATIWDKAMSAEVEGLIRAGTFTLAAKIPEGCNVIDARWVFKWKADETGKIVKAKARLVAKGFKQKHGVD 498
[Close]
BLAST of mRNA_H-paniculata_contig37432.9855.1 vs. uniprot
Match: A0A6H5J594_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J594_9PHAE)

HSP 1 Score: 81.3 bits (199), Expect = 4.040e-16
Identity = 43/81 (53.09%), Postives = 52/81 (64.20%), Query Frame = 1 
Query:    1 PIPYASACASQYSNVWADAMASEFEGLNAAGTF-LVDSVPVNRNVLGAKWVFKWKTDAQGTIVKGKARLVAKDFSQVEGVD 240
            P  Y  A  S+++ +W  AM++E EGL  AGTF L   +P   NV+ A+WVFKWK D  G IVK KARLVAK F Q  GVD
Sbjct:  482 PGSYQEALRSKHATIWDKAMSAEVEGLIRAGTFTLAAKIPEGCNVIDARWVFKWKADETGKIVKAKARLVAKGFKQKHGVD 562
[Close]
BLAST of mRNA_H-paniculata_contig37432.9855.1 vs. uniprot
Match: A0A6H5KHE8_9PHAE (CCHC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHE8_9PHAE)

HSP 1 Score: 81.3 bits (199), Expect = 4.040e-16
Identity = 43/81 (53.09%), Postives = 52/81 (64.20%), Query Frame = 1 
Query:    1 PIPYASACASQYSNVWADAMASEFEGLNAAGTF-LVDSVPVNRNVLGAKWVFKWKTDAQGTIVKGKARLVAKDFSQVEGVD 240
            P  Y  A  S+++ +W  AM++E EGL  AGTF L   +P   NV+ A+WVFKWK D  G IVK KARLVAK F Q  GVD
Sbjct:  626 PGSYQEALRSKHATIWDKAMSAEVEGLIRAGTFTLAAKIPEGCNVIDARWVFKWKADETGKIVKAKARLVAKGFKQKHGVD 706
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig37432.9855.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KKK1_9PHAE1.790e-1755.56Integrase catalytic domain-containing protein n=2 ... [more]
A0A6H5KPV1_9PHAE2.410e-1755.56Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JRL9_9PHAE2.460e-1755.56Integrase catalytic domain-containing protein n=2 ... [more]
A0A6H5KLE6_9PHAE7.310e-1750.60Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5L3I1_9PHAE2.180e-1654.32Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KZH7_9PHAE2.190e-1654.32Uncharacterized protein n=3 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JV80_9PHAE4.000e-1653.09Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5LDZ0_9PHAE4.030e-1653.09CCHC-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5J594_9PHAE4.040e-1653.09Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5KHE8_9PHAE4.040e-1653.09CCHC-type domain-containing protein n=1 Tax=Ectoca... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig37432contigH-paniculata_contig37432:1604..1849 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeArthropoda
Seed ortholog score73.2
Seed ortholog evalue6.5e-11
Seed eggNOG ortholog7029.ACYPI24114-PA
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Reverse transcriptase (RNA-dependent DNA polymerase)
EggNOG OGs38DPC@33154,3BI7U@33208,3CTS1@33213,3SQRW@50557,41WYJ@6656,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelInsecta
Best eggNOG OGNA|NA|NA
Exons1
Model size246
Cds size246
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930152.0290272-CDS-H-paniculata_contig37432:1603..18491622930152.0290272-CDS-H-paniculata_contig37432:1603..1849Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig37432 1604..1849 -
1691481168.3740005-CDS-H-paniculata_contig37432:1603..18491691481168.3740005-CDS-H-paniculata_contig37432:1603..1849Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig37432 1604..1849 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig37432.9855.1prot_H-paniculata_contig37432.9855.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig37432 1604..1849 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig37432.9855.1

>prot_H-paniculata_contig37432.9855.1 ID=prot_H-paniculata_contig37432.9855.1|Name=mRNA_H-paniculata_contig37432.9855.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=82bp
PIPYASACASQYSNVWADAMASEFEGLNAAGTFLVDSVPVNRNVLGAKWV
FKWKTDAQGTIVKGKARLVAKDFSQVEGVDSF
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mRNA from alignment at H-paniculata_contig37432:1604..1849-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig37432.9855.1 ID=mRNA_H-paniculata_contig37432.9855.1|Name=mRNA_H-paniculata_contig37432.9855.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=246bp|location=Sequence derived from alignment at H-paniculata_contig37432:1604..1849- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CCGATACCGTACGCTTCAGCTTGTGCCTCGCAGTACTCCAACGTGTGGGC
GGATGCAATGGCTTCCGAGTTCGAGGGTCTCAACGCGGCGGGGACGTTTT
TGGTAGATAGCGTACCCGTAAATCGTAATGTACTGGGGGCCAAGTGGGTG
TTTAAATGGAAGACAGATGCTCAGGGTACGATTGTCAAGGGCAAAGCTAG
ACTAGTGGCGAAAGATTTTAGCCAGGTAGAAGGAGTCGATTCCTTT
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Coding sequence (CDS) from alignment at H-paniculata_contig37432:1604..1849-

>mRNA_H-paniculata_contig37432.9855.1 ID=mRNA_H-paniculata_contig37432.9855.1|Name=mRNA_H-paniculata_contig37432.9855.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=492bp|location=Sequence derived from alignment at H-paniculata_contig37432:1604..1849- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CCGATACCGTACGCTTCAGCTTGTGCCTCGCAGTACTCCAACGTGTGGGC
GGATGCAATGGCTTCCGAGTTCGAGGGTCTCAACGCGGCGGGGACGTTTT
TGGTAGATAGCGTACCCGTAAATCGTAATGTACTGGGGGCCAAGTGGGTG
TTTAAATGGAAGACAGATGCTCAGGGTACGATTGTCAAGGGCAAAGCTAG
ACTAGTGGCGAAAGATTTTAGCCAGGTAGAAGGAGTCGATTCCTTTCCGA
TACCGTACGCTTCAGCTTGTGCCTCGCAGTACTCCAACGTGTGGGCGGAT
GCAATGGCTTCCGAGTTCGAGGGTCTCAACGCGGCGGGGACGTTTTTGGT
AGATAGCGTACCCGTAAATCGTAATGTACTGGGGGCCAAGTGGGTGTTTA
AATGGAAGACAGATGCTCAGGGTACGATTGTCAAGGGCAAAGCTAGACTA
GTGGCGAAAGATTTTAGCCAGGTAGAAGGAGTCGATTCCTTT
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