prot_H-paniculata_contig37193.9807.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig37193.9807.1
Unique Nameprot_H-paniculata_contig37193.9807.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length67
Homology
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BLAST of mRNA_H-paniculata_contig37193.9807.1 vs. uniprot
Match: D7FTM8_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FTM8_ECTSI)

HSP 1 Score: 110 bits (275), Expect = 1.140e-26
Identity = 52/63 (82.54%), Postives = 58/63 (92.06%), Query Frame = 0 
Query:    1 GCRPNALLVATLVKAHGRRRRLDDATRVVLRMQDWGLQPDVVVFNSLAAAAVWNRRIDLALEV 63
            GCRPN +LVAT+VKAHGRRRRLDDA RVVLRM DWG++PDV VFNSLAAAAVWN R+DLAL+V
Sbjct:  791 GCRPNGMLVATVVKAHGRRRRLDDACRVVLRMVDWGIKPDVAVFNSLAAAAVWNGRMDLALQV 853
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig37193.9807.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FTM8_ECTSI1.140e-2682.54Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002885Pentatricopeptide repeatPFAMPF13812PPR_3coord: 3..48
e-value: 3.9E-4
score: 20.4
IPR002885Pentatricopeptide repeatTIGRFAMTIGR00756TIGR00756coord: 11..41
e-value: 7.8E-6
score: 23.7
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 5..39
score: 9.262
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 40..67
score: 6.774
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10coord: 1..67
e-value: 2.7E-13
score: 51.6

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig37193contigH-paniculata_contig37193:288..488 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig37193.9807.1mRNA_H-paniculata_contig37193.9807.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig37193 288..488 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig37193.9807.1 ID=prot_H-paniculata_contig37193.9807.1|Name=mRNA_H-paniculata_contig37193.9807.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=67bp
GCRPNALLVATLVKAHGRRRRLDDATRVVLRMQDWGLQPDVVVFNSLAAA
AVWNRRIDLALEVRRCM
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR002885Pentatricopeptide_repeat
IPR011990TPR-like_helical_dom_sf