mRNA_H-paniculata_contig37193.9807.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig37193.9807.1
Unique NamemRNA_H-paniculata_contig37193.9807.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig37193.9807.1 vs. uniprot
Match: D7FTM8_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FTM8_ECTSI)

HSP 1 Score: 110 bits (275), Expect = 1.140e-26
Identity = 52/63 (82.54%), Postives = 58/63 (92.06%), Query Frame = 1 
Query:    1 GCRPNALLVATLVKAHGRRRRLDDATRVVLRMQDWGLQPDVVVFNSLAAAAVWNRRIDLALEV 189
            GCRPN +LVAT+VKAHGRRRRLDDA RVVLRM DWG++PDV VFNSLAAAAVWN R+DLAL+V
Sbjct:  791 GCRPNGMLVATVVKAHGRRRRLDDACRVVLRMVDWGIKPDVAVFNSLAAAAVWNGRMDLALQV 853
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig37193.9807.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FTM8_ECTSI1.140e-2682.54Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig37193contigH-paniculata_contig37193:288..488 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score112.5
Seed ortholog evalue7.9e-23
Seed eggNOG ortholog2880.D7FTM8
Hectar predicted targeting categoryother localisation
EggNOG free text desc.endonuclease activity
EggNOG OGsKOG4197@1,KOG4197@2759
Ec32 ortholog descriptionPentatricopeptide repeat
Ec32 orthologEc-06_008880.1
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size201
Cds size201
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930146.9856138-CDS-H-paniculata_contig37193:287..4881622930146.9856138-CDS-H-paniculata_contig37193:287..488Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig37193 288..488 +
1691481166.1383011-CDS-H-paniculata_contig37193:287..4881691481166.1383011-CDS-H-paniculata_contig37193:287..488Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig37193 288..488 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig37193.9807.1prot_H-paniculata_contig37193.9807.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig37193 288..488 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig37193.9807.1

>prot_H-paniculata_contig37193.9807.1 ID=prot_H-paniculata_contig37193.9807.1|Name=mRNA_H-paniculata_contig37193.9807.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=67bp
GCRPNALLVATLVKAHGRRRRLDDATRVVLRMQDWGLQPDVVVFNSLAAA
AVWNRRIDLALEVRRCM
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mRNA from alignment at H-paniculata_contig37193:288..488+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig37193.9807.1 ID=mRNA_H-paniculata_contig37193.9807.1|Name=mRNA_H-paniculata_contig37193.9807.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=201bp|location=Sequence derived from alignment at H-paniculata_contig37193:288..488+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGCTGCCGGCCGAACGCGCTGCTCGTTGCGACGCTAGTCAAGGCCCACGG
AAGAAGGCGCAGGTTAGATGATGCCACAAGGGTCGTGCTGCGGATGCAGG
ATTGGGGACTCCAGCCTGATGTGGTGGTCTTTAACTCCTTGGCCGCCGCG
GCCGTGTGGAATAGGAGGATTGATCTCGCGCTGGAGGTGAGGAGGTGCAT
G
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Coding sequence (CDS) from alignment at H-paniculata_contig37193:288..488+

>mRNA_H-paniculata_contig37193.9807.1 ID=mRNA_H-paniculata_contig37193.9807.1|Name=mRNA_H-paniculata_contig37193.9807.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=402bp|location=Sequence derived from alignment at H-paniculata_contig37193:288..488+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGCTGCCGGCCGAACGCGCTGCTCGTTGCGACGCTAGTCAAGGCCCACGG
AAGAAGGCGCAGGTTAGATGATGCCACAAGGGTCGTGCTGCGGATGCAGG
ATTGGGGACTCCAGCCTGATGTGGTGGTCTTTAACTCCTTGGCCGCCGCG
GCCGTGTGGAATAGGAGGATTGATCTCGCGCTGGAGGTGAGGAGGTGCAT
GGGCTGCCGGCCGAACGCGCTGCTCGTTGCGACGCTAGTCAAGGCCCACG
GAAGAAGGCGCAGGTTAGATGATGCCACAAGGGTCGTGCTGCGGATGCAG
GATTGGGGACTCCAGCCTGATGTGGTGGTCTTTAACTCCTTGGCCGCCGC
GGCCGTGTGGAATAGGAGGATTGATCTCGCGCTGGAGGTGAGGAGGTGCA
TG
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