prot_H-paniculata_contig3705.9778.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig3705.9778.1
Unique Nameprot_H-paniculata_contig3705.9778.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length522
Homology
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BLAST of mRNA_H-paniculata_contig3705.9778.1 vs. uniprot
Match: A0A6H5L6U6_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6U6_9PHAE)

HSP 1 Score: 107 bits (266), Expect = 2.800e-21
Identity = 65/136 (47.79%), Postives = 82/136 (60.29%), Query Frame = 0 
Query:   29 SSSSAVDVLGALMLVIERGWVARVGSLQATSLDCLVACRDIARFRLKVAKKTPSRVWHPKLCGRGRRQGSVSHSVPPMFHIDRSDRLTLPRVTKMLWDRPSFDLGHPDFALELPEELQQLVLGGEFGGALDGVSWP 164
            +  +A   LGAL +VI  GWVAR  SLQ  S++ L +CR++A FRL++A+KTP RV+  K  G GR  G VS S+             LPRV ++L+DR  FDL  P +AL  P EL  LVLG EF G L GV WP
Sbjct:  293 AGGTAATTLGALRVVIASGWVARTISLQVASVETLRSCREVANFRLRIARKTPRRVYQDKFAGGGR--GRVSRSI------------ILPRVVRVLYDRSEFDL-KPGWAL--PVELVGLVLGTEFCGDLKGVPWP 411
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BLAST of mRNA_H-paniculata_contig3705.9778.1 vs. uniprot
Match: D8LHW9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LHW9_ECTSI)

HSP 1 Score: 107 bits (267), Expect = 3.260e-21
Identity = 65/137 (47.45%), Postives = 82/137 (59.85%), Query Frame = 0 
Query:   28 TSSSSAVDVLGALMLVIERGWVARVGSLQATSLDCLVACRDIARFRLKVAKKTPSRVWHPKLCGRGRRQGSVSHSVPPMFHIDRSDRLTLPRVTKMLWDRPSFDLGHPDFALELPEELQQLVLGGEFGGALDGVSWP 164
            T+  +A   LGAL +VI  GWVAR  SLQ  S++ L +CR++A FRL++A+KTP RV+  K  G G   G VS S+             LPRV ++L+DR  FDL  P +AL  P EL  LVLG EF G L GV WP
Sbjct:   19 TAGGTAATTLGALRVVIASGWVARTISLQVASVETLRSCREVANFRLRIARKTPRRVYQDKFAGGG--HGRVSRSI------------ILPRVVRVLYDRSEFDL-KPGWAL--PVELVGLVLGTEFCGDLKGVPWP 138
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig3705.9778.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5L6U6_9PHAE2.800e-2147.79Reverse transcriptase domain-containing protein n=... [more]
D8LHW9_ECTSI3.260e-2147.45Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR008615FNIPPFAMPF05725FNIPcoord: 464..505
e-value: 7.6E-6
score: 26.0
coord: 220..263
e-value: 2.0E-7
score: 31.1
IPR032675Leucine-rich repeat domain superfamilyGENE3D3.80.10.10coord: 129..335
e-value: 3.6E-9
score: 37.5
NoneNo IPR availablePANTHERPTHR32134UNCHARACTERIZEDcoord: 141..270
coord: 364..480
NoneNo IPR availablePANTHERPTHR32134UNCHARACTERIZEDcoord: 275..373
NoneNo IPR availablePANTHERPTHR32134:SF86coord: 141..270
coord: 364..480
NoneNo IPR availablePANTHERPTHR32134:SF86coord: 275..373
NoneNo IPR availableSUPERFAMILY52058L domain-likecoord: 130..372

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig3705contigH-paniculata_contig3705:14164..16956 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig3705.9778.1mRNA_H-paniculata_contig3705.9778.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig3705 14067..17356 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig3705.9778.1 ID=prot_H-paniculata_contig3705.9778.1|Name=mRNA_H-paniculata_contig3705.9778.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=522bp
MSYSRPSEEQEKTEQQRIGNDNAKTSTTSSSSAVDVLGALMLVIERGWVA
RVGSLQATSLDCLVACRDIARFRLKVAKKTPSRVWHPKLCGRGRRQGSVS
HSVPPMFHIDRSDRLTLPRVTKMLWDRPSFDLGHPDFALELPEELQQLVL
GGEFGGALDGVSWPSALQSLIFWRRFNRAVDNVSWPRHLKTLTFGCNFNQ
RVDNVVWPPGLETLTFGSWFDQKLDGVNFPPMLKRLTLGRDFNQPVERIR
WPPALCHLSFGFFFNRSLEAAAAAWPPTLRELILGDCFNQDVRHVAWPAG
LHTLKFGRGFSSEVEGALWPPALKSLTFGGTFNRSVVAAGFPEYLKSLEF
GFGFNQPVDAVVWPSGLKRLVFAEEFDRAVEGCSWPAGLTDLVFGLKFNR
LVAGSTWPFALQRLTFGDEFDQSLEEVVLPEGLMEIKFGEAFNQPIECVR
WPPGLEVMVFGERFNQPLQGVTWPMALKKLQLGSDFDQKVEEIQWPSGLR
RVEFIDSYRHVDDHRAIVVAA*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR008615FNIP
IPR032675LRR_dom_sf