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Homology
BLAST of mRNA_H-paniculata_contig3705.9778.1 vs. uniprot
Match: A0A6H5L6U6_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6U6_9PHAE) HSP 1 Score: 107 bits (266), Expect = 5.980e-21 Identity = 65/136 (47.79%), Postives = 82/136 (60.29%), Query Frame = 2
Query: 182 SSSSAVDVLGALMLVIERGWVARVGSLQATSLDCLVACRDIARFRLKVAKKTPSRVWHPKLCGRGRRQGSVSHSVPPMFHIDRSDRLTLPRVTKMLWDRPSFDLGHPDFALELPEELQQLVLGGEFGGALDGVSWP 589
+ +A LGAL +VI GWVAR SLQ S++ L +CR++A FRL++A+KTP RV+ K G GR G VS S+ LPRV ++L+DR FDL P +AL P EL LVLG EF G L GV WP
Sbjct: 293 AGGTAATTLGALRVVIASGWVARTISLQVASVETLRSCREVANFRLRIARKTPRRVYQDKFAGGGR--GRVSRSI------------ILPRVVRVLYDRSEFDL-KPGWAL--PVELVGLVLGTEFCGDLKGVPWP 411
BLAST of mRNA_H-paniculata_contig3705.9778.1 vs. uniprot
Match: D8LHW9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LHW9_ECTSI) HSP 1 Score: 107 bits (267), Expect = 7.320e-21 Identity = 65/137 (47.45%), Postives = 82/137 (59.85%), Query Frame = 2
Query: 179 TSSSSAVDVLGALMLVIERGWVARVGSLQATSLDCLVACRDIARFRLKVAKKTPSRVWHPKLCGRGRRQGSVSHSVPPMFHIDRSDRLTLPRVTKMLWDRPSFDLGHPDFALELPEELQQLVLGGEFGGALDGVSWP 589
T+ +A LGAL +VI GWVAR SLQ S++ L +CR++A FRL++A+KTP RV+ K G G G VS S+ LPRV ++L+DR FDL P +AL P EL LVLG EF G L GV WP
Sbjct: 19 TAGGTAATTLGALRVVIASGWVARTISLQVASVETLRSCREVANFRLRIARKTPRRVYQDKFAGGG--HGRVSRSI------------ILPRVVRVLYDRSEFDL-KPGWAL--PVELVGLVLGTEFCGDLKGVPWP 138
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Taxonomic scope | Eukaryota |
| Seed ortholog score | 108.2 |
| Seed ortholog evalue | 1.2e-20 |
| Seed eggNOG ortholog | 2880.D8LHW9 |
| Hectar predicted targeting category | other localisation |
| EggNOG free text desc. | FNIP Repeat |
| EggNOG OGs | 2E9BD@1,2SFQ3@2759 |
| Ec32 ortholog description | FNIP |
| Ec32 ortholog | Ec-18_000780.1 |
| COG Functional cat. | S |
| Best tax level | Eukaryota |
| Best eggNOG OG | NA|NA|NA |
| Exons | 3 |
| Model size | 2063 |
| Cds size | 1566 |
| Stop | 1 |
| Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig3705.9778.1 >prot_H-paniculata_contig3705.9778.1 ID=prot_H-paniculata_contig3705.9778.1|Name=mRNA_H-paniculata_contig3705.9778.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=522bp
MSYSRPSEEQEKTEQQRIGNDNAKTSTTSSSSAVDVLGALMLVIERGWVA RVGSLQATSLDCLVACRDIARFRLKVAKKTPSRVWHPKLCGRGRRQGSVS HSVPPMFHIDRSDRLTLPRVTKMLWDRPSFDLGHPDFALELPEELQQLVL GGEFGGALDGVSWPSALQSLIFWRRFNRAVDNVSWPRHLKTLTFGCNFNQ RVDNVVWPPGLETLTFGSWFDQKLDGVNFPPMLKRLTLGRDFNQPVERIR WPPALCHLSFGFFFNRSLEAAAAAWPPTLRELILGDCFNQDVRHVAWPAG LHTLKFGRGFSSEVEGALWPPALKSLTFGGTFNRSVVAAGFPEYLKSLEF GFGFNQPVDAVVWPSGLKRLVFAEEFDRAVEGCSWPAGLTDLVFGLKFNR LVAGSTWPFALQRLTFGDEFDQSLEEVVLPEGLMEIKFGEAFNQPIECVR WPPGLEVMVFGERFNQPLQGVTWPMALKKLQLGSDFDQKVEEIQWPSGLR RVEFIDSYRHVDDHRAIVVAA* back to topmRNA from alignment at H-paniculata_contig3705:14067..17356+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_H-paniculata_contig3705.9778.1 ID=mRNA_H-paniculata_contig3705.9778.1|Name=mRNA_H-paniculata_contig3705.9778.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=3290bp|location=Sequence derived from alignment at H-paniculata_contig3705:14067..17356+ (Halopteris paniculata Hal_grac_a_UBK monoicous) CTGTGACTTCGTCTAGCTTGACTTGGTATGGTACGTGCAACGCATTTGCT
GTGCAAGACAAGGCAGCCTTCCTGCTACTGCATTTCTTTTTCCCAACATG
TCATATTCTCGCCCTTCCGAGGAGCAGGAGAAAACCGAACAGCAGCGCAT
TGGCAATGACAATGCCAAAACCAGTACAACGTCATCATCGTCAGCAGTCG
ATGTGCTCGGAGCTTTGATGTTGGTGATCGAACGGGGTTGGGTAGCACGT
GTCGGTTCTCTCCAGGCGACCTCGCTGGATTGCCTTGTGGCATGCAGGGA
TATCGCACGCTTTCGCCTCAAGGTGGCGAAGAAAACGCCCAGTAGAGTTT
GGCACCCTAAGCTGTGCGGCCGAGGCCGTCGGCAAGGAAGCGTCTCCCAC
TCCGTTCCTCCCATGTTCCATATTGACAGGTATCTTCGTTTTATTTAAGA
CATTTGTCAGTCTCGCATAATCTTCAGTGTACAACGTGTCAGCATTTACA
CCGCAGTTGCACACTGCGGCCCGTTACAATCACGGAGTACAATTTGTCAT
CCGTAAAACATTTTTCACTTGTAAACAATACACAGACAAGCTTCGTCTGT
ACTCCTCGACTAGCCGAGGCAGCCAACCACCGACTAGGGAATGCTGGAGT
TGTTCCTGTTGTCCGCATTTGTGGGCCTACCTACGAGAAGGGGTCAGTTT
GTACGACGGCGGGGTCAACAGGACCGCTGCACGGCATGGATGCGACCGTC
CTTCTCGACTGTACAGACCAAACGGTTTCACCGTTTGAATGAAAGATCTC
GGCGCCGTTTTTTTTTTTTTCAAATCTCGTGCGCTCCAGTCTGTGTGGTT
TGCGGGCAAAATTTCGCACAATTTCAGTTCAACTTGTCCTACCTAGTACA
GTAGAACGCAACGTGTGGGATGTGCCACACCTACCGCTGCCAGGTCCGTT
GCATCTGTTGAGCACGTCGAGTCCCTCTTCTCTAAAAGATCTAGACTGAA
ATTCACAGGCGCTGTTGGCTCGCCGACGATAGGTTTTCTACGAAGTATTT
CCTTCGCGCCCTTCAACCTTCTTGACGCTCATGTTGGTCGTGTGTGTGTA
CAGGTCTGACCGCCTGACCTTGCCACGAGTCACCAAAATGTTGTGGGATC
GGCCTTCGTTCGATCTTGGTCACCCCGACTTCGCCCTCGAGCTTCCCGAA
GAGCTGCAACAGTTGGTGCTGGGGGGAGAGTTTGGTGGAGCGCTTGACGG
AGTCTCATGGCCGTCCGCCCTCCAGAGTCTCATCTTCTGGCGCAGGTAAT
TAGTAGCCGTCCCTTGCACGCAATATCAGCTTCTGTGGTTTATGACCACC
GCGACAACGGATTATGTTGATACCCGGTATGTTTTTGCTCCACCTACCGT
CAACTACGGACGTTGGCACACATACACGCTTTCAGGATCCACTTACATGA
GCAAAGCAATCGCTTGTCGTTAGCTTGCCTGCATTTCTCCCCAGGACGCA
CCTTTCCTCAAGAACAACAATAGACGTGGGGCCGGAATTACTGTGTCGAA
CGGGTCCTTCCATATCCAGATCTTGAAAACATGACGCCTGCTACGTTCAC
CGTTTTGGTTGGTACCCAATTTACAAGTGCCCTAATTTTCAAGAAAATAT
TGCGTGTTATTCCTCGATTGCCGTAGGCGTGCTCAGAAACATGCAAATAT
TTTGTGCTAAGAAAAACGAAGTTGGTTGTATCACAATGCGCTTGCTGAGA
AACTTTCGCGAGTATTTATCTATTTATCTATTTTTTCTGGATATCTGTCA
TCACCGTTACCTTGGTCGATACGGACCCACACAACAACAAAAAAACAGAT
TTAACCGAGCGGTCGACAATGTGAGCTGGCCTCGGCATCTCAAGACCCTC
ACGTTCGGCTGCAATTTCAACCAACGCGTCGACAATGTCGTGTGGCCTCC
TGGACTGGAAACTCTGACGTTCGGCAGCTGGTTTGATCAAAAACTTGACG
GGGTTAACTTTCCACCCATGCTTAAGCGCTTAACTCTTGGCCGGGACTTT
AACCAGCCTGTGGAGCGTATCCGTTGGCCGCCGGCACTCTGTCACCTCTC
TTTCGGGTTCTTCTTCAATCGGTCGTTGGAAGCTGCAGCTGCTGCTTGGC
CACCAACCCTGAGAGAGCTGATACTCGGTGACTGCTTTAATCAAGACGTG
AGGCATGTAGCTTGGCCGGCGGGTTTACACACGCTCAAATTTGGCAGAGG
TTTCAGCTCGGAGGTAGAGGGTGCCTTGTGGCCTCCGGCTTTGAAGTCGC
TCACGTTTGGCGGCACATTCAATCGTTCTGTGGTGGCGGCGGGGTTTCCA
GAGTACTTGAAAAGTCTGGAGTTTGGATTCGGGTTCAACCAGCCTGTTGA
TGCGGTGGTTTGGCCATCGGGCTTGAAGCGGCTGGTGTTTGCGGAGGAGT
TCGATAGGGCGGTAGAGGGATGCTCGTGGCCCGCCGGGCTAACCGATCTT
GTGTTTGGGTTGAAGTTCAATAGACTGGTCGCTGGATCGACTTGGCCATT
TGCTTTGCAGAGATTGACGTTCGGGGACGAATTCGATCAATCATTGGAGG
AAGTAGTTTTGCCCGAGGGTTTGATGGAAATTAAGTTTGGGGAAGCGTTT
AACCAGCCCATTGAGTGTGTTCGATGGCCCCCTGGTCTCGAAGTCATGGT
GTTTGGGGAGCGATTTAATCAACCGCTGCAGGGTGTCACGTGGCCGATGG
CACTGAAAAAGCTTCAGCTCGGCAGTGATTTTGACCAGAAAGTGGAGGAA
ATACAGTGGCCTTCGGGTCTGCGTAGAGTGGAGTTTATCGATAGTTACCG
CCATGTTGATGACCACCGCGCAATCGTGGTGGCAGCGTAAGTACGTGGAG
GGGTACGCTATACACTTTTGCACTCCTCAACGCAGCAACTCTAGGCAAGG
TCTCAATTTTCCTTGTTCAATTCTAAGCATGTTGCAGCTTTCTGACGGTG
GGGCGAAGACTAACGTGGGCAGGGAAGGTGAACATGCGCACAAAACAAAA
CATGTGAGAGTGTGCAGTAGCAGGCTGGGCGCGTGTGCGTGTCGAGTAAC
AGAGGATCTTGCTGGGGTCATCGATCATCTTGTCTGTCTGATTAGCGCAG
GGGGCAACAGTTCATGCGTAGCTACTGCATACCCGTAGGGAGCGATGTAA
ACGTCCAGGGGGCGATTTTTTTTAACTTGATTTTATCGACAGCAAAGCCC
ATTTGCATTCCATAAAAACACGTCGATTGACATGTCTCGA back to topCoding sequence (CDS) from alignment at H-paniculata_contig3705:14067..17356+ >mRNA_H-paniculata_contig3705.9778.1 ID=mRNA_H-paniculata_contig3705.9778.1|Name=mRNA_H-paniculata_contig3705.9778.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=3132bp|location=Sequence derived from alignment at H-paniculata_contig3705:14067..17356+ (Halopteris paniculata Hal_grac_a_UBK monoicous) ATGTCATATTCTCGCCCTTCCGAGGAGCAGGAGAAAACCGAACAGCAGCG CATTGGCAATGACAATGCCAAAACCAGTACAACGTCATCATCGTCAGCAG TCGATGTGCTCGGAGCTTTGATGTTGGTGATCGAACGGGGTTGGGTAGCA CGTGTCGGTTCTCTCCAGGCGACCTCGCTGGATTGCCTTGTGGCATGCAG GGATATCGCACGCTTTCGCCTCAAGGTGGCGAAGAAAACGCCCAGTAGAG TTTGGCACCCTAAGCTGTGCGGCCGAGGCCGTCGGCAAGGAAGCGTCTCC CACTCCGTTCCTCCCATGTTCCATATTGACAGATGTCATATTCTCGCCCT TCCGAGGAGCAGGAGAAAACCGAACAGCAGCGCATTGGCAATGACAATGC CAAAACCAGTACAACGTCATCATCGTCAGCAGTCGATGTGCTCGGAGCTT TGATGTTGGTGATCGAACGGGGTTGGGTAGCACGTGTCGGTTCTCTCCAG GCGACCTCGCTGGATTGCCTTGTGGCATGCAGGGATATCGCACGCTTTCG CCTCAAGGTGGCGAAGAAAACGCCCAGTAGAGTTTGGCACCCTAAGCTGT GCGGCCGAGGCCGTCGGCAAGGAAGCGTCTCCCACTCCGTTCCTCCCATG TTCCATATTGACAGGTCTGACCGCCTGACCTTGCCACGAGTCACCAAAAT GTTGTGGGATCGGCCTTCGTTCGATCTTGGTCACCCCGACTTCGCCCTCG AGCTTCCCGAAGAGCTGCAACAGTTGGTGCTGGGGGGAGAGTTTGGTGGA GCGCTTGACGGAGTCTCATGGCCGTCCGCCCTCCAGAGTCTCATCTTCTG GCGCAGGTCTGACCGCCTGACCTTGCCACGAGTCACCAAAATGTTGTGGG ATCGGCCTTCGTTCGATCTTGGTCACCCCGACTTCGCCCTCGAGCTTCCC GAAGAGCTGCAACAGTTGGTGCTGGGGGGAGAGTTTGGTGGAGCGCTTGA CGGAGTCTCATGGCCGTCCGCCCTCCAGAGTCTCATCTTCTGGCGCAGAT TTAACCGAGCGGTCGACAATGTGAGCTGGCCTCGGCATCTCAAGACCCTC ACGTTCGGCTGCAATTTCAACCAACGCGTCGACAATGTCGTGTGGCCTCC TGGACTGGAAACTCTGACGTTCGGCAGCTGGTTTGATCAAAAACTTGACG GGGTTAACTTTCCACCCATGCTTAAGCGCTTAACTCTTGGCCGGGACTTT AACCAGCCTGTGGAGCGTATCCGTTGGCCGCCGGCACTCTGTCACCTCTC TTTCGGGTTCTTCTTCAATCGGTCGTTGGAAGCTGCAGCTGCTGCTTGGC CACCAACCCTGAGAGAGCTGATACTCGGTGACTGCTTTAATCAAGACGTG AGGCATGTAGCTTGGCCGGCGGGTTTACACACGCTCAAATTTGGCAGAGG TTTCAGCTCGGAGGTAGAGGGTGCCTTGTGGCCTCCGGCTTTGAAGTCGC TCACGTTTGGCGGCACATTCAATCGTTCTGTGGTGGCGGCGGGGTTTCCA GAGTACTTGAAAAGTCTGGAGTTTGGATTCGGGTTCAACCAGCCTGTTGA TGCGGTGGTTTGGCCATCGGGCTTGAAGCGGCTGGTGTTTGCGGAGGAGT TCGATAGGGCGGTAGAGGGATGCTCGTGGCCCGCCGGGCTAACCGATCTT GTGTTTGGGTTGAAGTTCAATAGACTGGTCGCTGGATCGACTTGGCCATT TGCTTTGCAGAGATTGACGTTCGGGGACGAATTCGATCAATCATTGGAGG AAGTAGTTTTGCCCGAGGGTTTGATGGAAATTAAGTTTGGGGAAGCGTTT AACCAGCCCATTGAGTGTGTTCGATGGCCCCCTGGTCTCGAAGTCATGGT GTTTGGGGAGCGATTTAATCAACCGCTGCAGGGTGTCACGTGGCCGATGG CACTGAAAAAGCTTCAGCTCGGCAGTGATTTTGACCAGAAAGTGGAGGAA ATACAGTGGCCTTCGGGTCTGCGTAGAGTGGAGTTTATCGATAGTTACCG CCATGTTGATGACCACCGCGCAATCGTGGTGGCAGCGTAAATTTAACCGA GCGGTCGACAATGTGAGCTGGCCTCGGCATCTCAAGACCCTCACGTTCGG CTGCAATTTCAACCAACGCGTCGACAATGTCGTGTGGCCTCCTGGACTGG AAACTCTGACGTTCGGCAGCTGGTTTGATCAAAAACTTGACGGGGTTAAC TTTCCACCCATGCTTAAGCGCTTAACTCTTGGCCGGGACTTTAACCAGCC TGTGGAGCGTATCCGTTGGCCGCCGGCACTCTGTCACCTCTCTTTCGGGT TCTTCTTCAATCGGTCGTTGGAAGCTGCAGCTGCTGCTTGGCCACCAACC CTGAGAGAGCTGATACTCGGTGACTGCTTTAATCAAGACGTGAGGCATGT AGCTTGGCCGGCGGGTTTACACACGCTCAAATTTGGCAGAGGTTTCAGCT CGGAGGTAGAGGGTGCCTTGTGGCCTCCGGCTTTGAAGTCGCTCACGTTT GGCGGCACATTCAATCGTTCTGTGGTGGCGGCGGGGTTTCCAGAGTACTT GAAAAGTCTGGAGTTTGGATTCGGGTTCAACCAGCCTGTTGATGCGGTGG TTTGGCCATCGGGCTTGAAGCGGCTGGTGTTTGCGGAGGAGTTCGATAGG GCGGTAGAGGGATGCTCGTGGCCCGCCGGGCTAACCGATCTTGTGTTTGG GTTGAAGTTCAATAGACTGGTCGCTGGATCGACTTGGCCATTTGCTTTGC AGAGATTGACGTTCGGGGACGAATTCGATCAATCATTGGAGGAAGTAGTT TTGCCCGAGGGTTTGATGGAAATTAAGTTTGGGGAAGCGTTTAACCAGCC CATTGAGTGTGTTCGATGGCCCCCTGGTCTCGAAGTCATGGTGTTTGGGG AGCGATTTAATCAACCGCTGCAGGGTGTCACGTGGCCGATGGCACTGAAA AAGCTTCAGCTCGGCAGTGATTTTGACCAGAAAGTGGAGGAAATACAGTG GCCTTCGGGTCTGCGTAGAGTGGAGTTTATCGATAGTTACCGCCATGTTG ATGACCACCGCGCAATCGTGGTGGCAGCGTAA back to top
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