prot_H-paniculata_contig336.8993.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig336.8993.1
Unique Nameprot_H-paniculata_contig336.8993.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length134
Homology
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BLAST of mRNA_H-paniculata_contig336.8993.1 vs. uniprot
Match: A0A6H5L4W1_9PHAE (PARP-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4W1_9PHAE)

HSP 1 Score: 58.5 bits (140), Expect = 5.070e-8
Identity = 32/90 (35.56%), Postives = 46/90 (51.11%), Query Frame = 0 
Query:   20 DSVTISYASRRGTNRCRRCKQYLAEGELRFGMIFKSENPTPHMLYQGFHLCCATAPNDVTQPDDLEGIQDLMPQDVEMVRRWIQTGTAPP 109
            +   I YA   G  RC  C   ++ G+L+ G  +  E+     L +  H  C  AP  +T P DL GI+DL P+DV+ V RW+  G + P
Sbjct:   73 EDFVIGYARGLGRVRCSSCGCKISAGQLQLGAFYMHEDR--FTLLRWHHQSCVDAPECLTSPMDLCGIEDLSPEDVDEVCRWLAHGRSGP 160
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig336.8993.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5L4W1_9PHAE5.070e-835.56PARP-type domain-containing protein n=1 Tax=Ectoca... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001510Zinc finger, PARP-typeSMARTSM01336zf_PARP_3coord: 26..103
e-value: 3.5E-4
score: 25.4
IPR001510Zinc finger, PARP-typePFAMPF00645zf-PARPcoord: 28..100
e-value: 4.5E-6
score: 27.4
IPR001510Zinc finger, PARP-typePROSITEPS50064PARP_ZN_FINGER_2coord: 28..106
score: 10.11
IPR036957Zinc finger, PARP-type superfamilyGENE3D3.30.1740.10coord: 16..121
e-value: 5.8E-10
score: 41.2
NoneNo IPR availableSUPERFAMILY57716Glucocorticoid receptor-like (DNA-binding domain)coord: 28..109

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig336contigH-paniculata_contig336:5479..8168 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig336.8993.1mRNA_H-paniculata_contig336.8993.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig336 5182..9871 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig336.8993.1 ID=prot_H-paniculata_contig336.8993.1|Name=mRNA_H-paniculata_contig336.8993.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=134bp
MPFQGNGGATHERRSSWSCDSVTISYASRRGTNRCRRCKQYLAEGELRFG
MIFKSENPTPHMLYQGFHLCCATAPNDVTQPDDLEGIQDLMPQDVEMVRR
WIQTGTAPPPVLSLSSQETRGIAGQAVHSVTAP*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001510Znf_PARP
IPR036957Znf_PARP_sf