mRNA_H-paniculata_contig336.8993.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig336.8993.1
Unique NamemRNA_H-paniculata_contig336.8993.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig336.8993.1 vs. uniprot
Match: A0A6H5L4W1_9PHAE (PARP-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4W1_9PHAE)

HSP 1 Score: 58.5 bits (140), Expect = 3.010e-6
Identity = 32/90 (35.56%), Postives = 46/90 (51.11%), Query Frame = 1 
Query:  355 DSVTISYASRRGTNRCRRCKQYLAEGELRFGMIFKSENPTPHMLYQGFHLCCATAPNDVTQPDDLEGIQDLMPQDVEMVRRWIQTGTAPP 624
            +   I YA   G  RC  C   ++ G+L+ G  +  E+     L +  H  C  AP  +T P DL GI+DL P+DV+ V RW+  G + P
Sbjct:   73 EDFVIGYARGLGRVRCSSCGCKISAGQLQLGAFYMHEDR--FTLLRWHHQSCVDAPECLTSPMDLCGIEDLSPEDVDEVCRWLAHGRSGP 160
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig336.8993.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5L4W1_9PHAE3.010e-635.56PARP-type domain-containing protein n=1 Tax=Ectoca... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig336contigH-paniculata_contig336:5182..9871 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionHypothetical protein
Ec32 orthologEc-02_001570.1
Exons3
Model size2402
Cds size402
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig336.8993.1prot_H-paniculata_contig336.8993.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig336 5479..8168 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930037.3041863-UTR-H-paniculata_contig336:5181..54781622930037.3041863-UTR-H-paniculata_contig336:5181..5478Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig336 5182..5478 +
1691481120.6667116-UTR-H-paniculata_contig336:5181..54781691481120.6667116-UTR-H-paniculata_contig336:5181..5478Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig336 5182..5478 +
1622930037.373664-UTR-H-paniculata_contig336:8168..98711622930037.373664-UTR-H-paniculata_contig336:8168..9871Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig336 8169..9871 +
1691481120.7147334-UTR-H-paniculata_contig336:8168..98711691481120.7147334-UTR-H-paniculata_contig336:8168..9871Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig336 8169..9871 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930037.323383-CDS-H-paniculata_contig336:5478..56281622930037.323383-CDS-H-paniculata_contig336:5478..5628Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig336 5479..5628 +
1691481120.6781275-CDS-H-paniculata_contig336:5478..56281691481120.6781275-CDS-H-paniculata_contig336:5478..5628Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig336 5479..5628 +
1622930037.3360589-CDS-H-paniculata_contig336:6169..63701622930037.3360589-CDS-H-paniculata_contig336:6169..6370Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig336 6170..6370 +
1691481120.688063-CDS-H-paniculata_contig336:6169..63701691481120.688063-CDS-H-paniculata_contig336:6169..6370Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig336 6170..6370 +
1622930037.3561108-CDS-H-paniculata_contig336:8117..81681622930037.3561108-CDS-H-paniculata_contig336:8117..8168Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig336 8118..8168 +
1691481120.6993816-CDS-H-paniculata_contig336:8117..81681691481120.6993816-CDS-H-paniculata_contig336:8117..8168Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig336 8118..8168 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig336.8993.1

>prot_H-paniculata_contig336.8993.1 ID=prot_H-paniculata_contig336.8993.1|Name=mRNA_H-paniculata_contig336.8993.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=134bp
MPFQGNGGATHERRSSWSCDSVTISYASRRGTNRCRRCKQYLAEGELRFG
MIFKSENPTPHMLYQGFHLCCATAPNDVTQPDDLEGIQDLMPQDVEMVRR
WIQTGTAPPPVLSLSSQETRGIAGQAVHSVTAP*
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mRNA from alignment at H-paniculata_contig336:5182..9871+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig336.8993.1 ID=mRNA_H-paniculata_contig336.8993.1|Name=mRNA_H-paniculata_contig336.8993.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=4690bp|location=Sequence derived from alignment at H-paniculata_contig336:5182..9871+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGCCAGACCCCACACCAATGACAGACTGACTGCTCCCCATCGGAGACACA
GCCACAACTTGGTCGACACCACTGCTCCGCCCCGAATCTGTACTTAAGCT
TCTTGCCTCTCAACACATCCGATAGACCTCATCCTCACTGTGGCGAGTTT
TGTAGCTGAACCTTTCCTACGACTTCTGTGATAAAGTTTTCCCCCCTGTG
CCCTCAACGCCTGGACGACCCAACGTTCCACTATTCAAGCAATCGATACC
AAAACTTTCAAGCTATCAACTACATAGCTGAGGGACACGTGATCTTCATG
CCGTTTCAAGGAAACGGCGGTGCGACCCATGAGCGACGATCATCATGGAG
TTGCGACAGTGTAACGATTTCCTACGCGTCTCGGAGAGGGACGAACAGAT
GCAGGCGATGCAAGCAGTATCTGGCAGAAGGCGAACTTCGATTTGGGGTA
AGTGACCATCACCATAGTCGGTGGAGTCATCGTAAGTCCGTGATTGTCAC
GTTCTGCCCAGTAGTTTGAACGTGTCCTCATGATCGTTCGGGTTTTCGAT
GCGATGGCTGTTGATCTCGCGTGGCATTCACCGTGTGCTCAGAGGGCAGC
AAGTAGCCTGTCTTGTTGCGAACAGCCCTCGCGAGGAAAACAAACGAGTC
AGCGGTAAATACTCACCTCGTAGAGAGATTGAGACATATTCATGAGGAGT
CACTAACAGTAGTCCATGCAACATTCATGTCTCCACCTGTACGTTCTTTT
CTCGGAACCGAATTATACGTGCTCTGGACATATGTTGTTGTGACTTTGGC
TTTCTGTCTTTCCTCGCCCTCCCGAGATACTCGAGATACACCACTACTGA
ACACTTAAACACACAAAATAAGCAATATCGTCGATGAACTTACTATCTCC
TAGATTTAACAGACATATCCTGATCAATCACGTGTCCATTCACTTCTCCC
CCCGCCCCAACCTAATCCGCCTTTCCTCATTTCGACAGATGATTTTCAAG
TCTGAAAACCCTACGCCGCACATGCTGTACCAAGGGTTCCACCTCTGCTG
CGCCACAGCGCCGAACGACGTTACTCAGCCTGATGATCTCGAAGGCATTC
AAGACTTGATGCCACAAGATGTCGAGATGGTGCGAAGATGGATTCAGACG
GGAACCGCGCCTCCGCCTGTGCTTTCTCTGTCTAGTCAGGTGAACAGGCC
GACTACTGCTTTTTATACCCGAATGAAGCTTGCAAAGTACTGGACTATTC
ATTGGTGTGTATTCACGGTCACATGGTCGGTCATGAGTTGTCTGTAGGAA
CGTAGCTGGAGCGGACCTCGATTTAGCGTGTACATATACGTACTTGCCCT
CGGCAGGGTAGTGGCACAACGTGTCTGCAGCAGTTAGGCAGTTGGCGTCT
CTCTCGTAAGTCAGTTGTACTGGCTCTAGAGTCAATCTGTGTACGATGCC
TGACTAACCTAAGACTACTCGTTTTAGCATTATGAATCTTTTCATCACCT
TCACCGATCTACCTGGTAATAAAGTATGGATGATCTCATCTATCCTCCTG
TTTCTTGGATGTCATGTGTCCGGGTGGTCTGAAACACCTCCAACACCTGC
CTGACTTCTAGGAAGGAATACCGCCTGTTGTTGTCTGTTGCCATTTTGCC
CTCCTCTAGTAAGTCAAGAGAGGTTGTATGTATACATGGTACGTTGCTAG
CTGGAAGAACTTCGGAAGTCCTGGTCGAAATTGAAATCAGGAGGGCGAAC
CGTGCTCTGCGCATTATCATGGAAGTTCCATAATTGCGGAGGATCTATAT
GGACCTGATGCCTTCTGGAGTTTATACGTGGCATCCACGCTTCACTTGTC
TTTTGTACTATTTTCATTGATTTATGAATAAGGAGAGAACAGCAAGCAAT
CTAGTTTTGGAGGTGTATTCTTTTTTCTTTGTTTGGGGCCGGTCAAGTCG
GCTTAACGTTTGCCTCAGCTGATCCCAGTACTTACTTCGTCCATCCATCG
TTCAAGTGTTGCGCGGAATTCAAGGGACAGGACAGCGGGTTTCCCTAACT
TAGTTTATCTGCTCCTTTCAATTTATACATGCGGCTCTTCATGCAGCACT
CAAATCGAACCAACAACAAACCGAGAGGCCGAGGAAGGTTTGTCGGAGAC
GACGACACAACAGTCACATTTGACCTCTAGCGCATGATATTCAAACCGGT
GGCACAAACAACAGAGTCGGGTATCCGGCCAAGCCTTTTTGTCTCCGCGT
CGTGCTCGCACATAACACGCCCAACCTTTGATGACATTTGGTCACTTAAG
AAATAATGGAACGCCTCGCAGTGCGAAAGTAAAAGCCCAGATTAGATAAG
ATTCCGTGATCGATCCTACATATGGTGTGCAGTAGCTGGAATATTTTTTT
TGAAGTATTGTATTATTGTTTTACTCTGAGCAGGTATCGATCTCTTGAAG
CGGTGGTCTTGTCACTACCCAATATGAGGTCGAAGAGACCTCTTTTGTTT
ACAAATTCATCAACCGTCGGACTTTACGTTCATTTTTACCGTGTAGGAAC
GATCCTGGAACGATCCCAAATCCGTCTGGATTAAAAGTTGAAAATATTAT
TATTGGGTCACCGGGGTGGGTCTACGCAAAATTCCCACTTCATCTCCACC
TGAAAAAAATGTTGATGGTATGAATATCTGCTGCTGTCCAGACAGATAGC
CCAGTGTAGACAGCAAGGAAAGGAAGGAAGTTGGCATACTTTCTGCACCT
CGATGACTGACGCTCGATATTTATTATATTTTTTATTCTGATTCCTTTAT
GAAAACTCAATTTAACAAGAAGTTATTTCGAGTGTTCTTTTTACTTAGCC
TGCTACCTAGTGACGCCAAATACACCAAGCTAGACAGACTCTTTCATGTT
GCTTCCCACCTTTTCGGTTTTCGTTTTTGCTTCCAGGAGACCCGTGGCAT
CGCAGGGCAGGCTGTGCACAGTGTCACCGCTCCGTGATACATGCAGAGTA
GCGTCGAGGACGACAGCGGTGCTAGGCTAGCTATAAGTCGTCCCGAAATA
TATACGATATAATAACTAGATGATCTTGTCGGTGCCGTGCTGTGCGCATG
TTGTGGTTTCGTCGGATGCTTCACTGTTTGATCTTTTAGTACAAAAAAAT
TCAGTCGACAGATTTTGGTTAGTTAGGTTTTGAGAGAGATGCGCATCCCG
ACTCGGGAGAGTTGAGTGCAATACGGCCCTGAGTATTTATGTATCCGTTC
TGCTTACCCTCCAACTTTCGTGAAGGACGGTGCTATATTGGCCGTGTTGC
CTGACCCTAGTAATGAGTTACAGTTGAAAGCTGTATTGTGATCCATGACC
AAGTTTTCGAGGTTGTGTGTTTGCACTCTTTGCTTTTCCCCCCCTGCCGA
ATGTCTGCTCGCTGGTGAAGATTTTTTTTTGAAGGGGGGGTTGGGGGATT
TTACGACGACTGAGTTTGAGCTGTCCGGTGTTGCGCTCTCCGAGGTCTTG
TTTTTTACAAGGGGTGGTTCTTGATTAAAAAAAACAAAAAAAAAACTATT
TTTGAGAGCCACCTGCAGTCAGTTTAGCTAGATACGGTGCATTATCTGTT
CTTTTTCGTGTGGTAATTAGCGGTGTTAAGGATTGTGTTGACAAATGTGT
GGACACCGGAAGACTCTTGTTTGTCGCTCGCTATCTATTATTGTGAAGGA
TTTTTGAATATATAAATGATGGTACGAGTGGGAAACGTTGACTACACTTT
CTCGGGTTAATGGGCTAACGTGCAGTTAGTAGTTGGACGTAAGACTGCCT
ACTGACTGTTTTAGCCATGGAAGTGGATGGGAGGACAGGACTTAATAGTG
TTGATGTGGTCTTGGTTTGGACCGAAAATATTGCAGCAAGCATCGGTTTT
TCTTTTTCATGTTTTTTTTGTTTCGGTGCGCAGTAGATGTTAGGGATGGG
CATGGCGTGTGCCTGTTTCCTTCGTTGGTTGTGGCTTTTGTGGCTTTTTT
TCTTGTTGTGTGGCGCTTTACCAGATTTTTTTTTCCCTGGATGTGTGTTG
TATGAAATATATAGAGTAAGGTATAATTTTGTTATTGAGATTCCGCTCAC
CCATTCGAAGACATCTTGCAGCGCGGCGTCGGTGTATGTTAGGTACAGTT
TAAGTAATGGATTTAGTCTAGACTAGAATTTTGTGTTGTTGCATCTGTTT
CTAAGAGTCTCCCCTTGAGTATATGGTGATAAGTTTGCAAGGCAATGTCA
CCGCGTTTTTTGTACTTGAGGAATTCTCGACGAAAAAAAAAGCGTATAGT
CGAAGTCCCTGAGAGGACGAGTGACATGGTGTTGATTGATATCGATAAGA
TAGAGTACCTGGGACCATGAGTATCTACACAGCTCTTTGTCCATCCATCG
TCGCTACAGGCGTGGTTTGTCCGTTGTATGTTGTGTTGCAGGAACTGTGG
TGGCTTTATTAATAAAGAACGATGTGCAAAAAGGTAACAAAGTTGGATGA
GAAGCTGAGGGTTCATGTAAGTTACTTCATTCTTGTGTTTACCTTTTTTA
TACCACTTTTTTGTCACACTCGAGCAGAGTTAGTTTGTTGCACTCTAGTA
GTATTGTTTTTGCAGTGTATGGCGCGACAAGCACCACGGACCTACGCCCG
AACGGGTAGGGTAGCTCGTGAACTGAGCATGACTGGAAGT
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Coding sequence (CDS) from alignment at H-paniculata_contig336:5182..9871+

>mRNA_H-paniculata_contig336.8993.1 ID=mRNA_H-paniculata_contig336.8993.1|Name=mRNA_H-paniculata_contig336.8993.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=804bp|location=Sequence derived from alignment at H-paniculata_contig336:5182..9871+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCCGTTTCAAGGAAACGGCGGTGCGACCCATGAGCGACGATCATCATG
GAGTTGCGACAGTGTAACGATTTCCTACGCGTCTCGGAGAGGGACGAACA
GATGCAGGCGATGCAAGCAGTATCTGGCAGAAGGCGAACTTCGATTTGGG
ATGCCGTTTCAAGGAAACGGCGGTGCGACCCATGAGCGACGATCATCATG
GAGTTGCGACAGTGTAACGATTTCCTACGCGTCTCGGAGAGGGACGAACA
GATGCAGGCGATGCAAGCAGTATCTGGCAGAAGGCGAACTTCGATTTGGG
ATGATTTTCAAGTCTGAAAACCCTACGCCGCACATGCTGTACCAAGGGTT
CCACCTCTGCTGCGCCACAGCGCCGAACGACGTTACTCAGCCTGATGATC
TCGAAGGCATTCAAGACTTGATGCCACAAGATGTCGAGATGGTGCGAAGA
TGGATTCAGACGGGAACCGCGCCTCCGCCTGTGCTTTCTCTGTCTAGTCA
GATGATTTTCAAGTCTGAAAACCCTACGCCGCACATGCTGTACCAAGGGT
TCCACCTCTGCTGCGCCACAGCGCCGAACGACGTTACTCAGCCTGATGAT
CTCGAAGGCATTCAAGACTTGATGCCACAAGATGTCGAGATGGTGCGAAG
ATGGATTCAGACGGGAACCGCGCCTCCGCCTGTGCTTTCTCTGTCTAGTC
AGGAGACCCGTGGCATCGCAGGGCAGGCTGTGCACAGTGTCACCGCTCCG
TGAGAGACCCGTGGCATCGCAGGGCAGGCTGTGCACAGTGTCACCGCTCC
GTGA
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