prot_H-paniculata_contig3323.8908.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig3323.8908.1
Unique Nameprot_H-paniculata_contig3323.8908.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length56
Homology
BLAST of mRNA_H-paniculata_contig3323.8908.1 vs. uniprot
Match: D7FRP7_ECTSI (General transcription factor IIH subunit n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FRP7_ECTSI)

HSP 1 Score: 109 bits (273), Expect = 3.880e-27
Identity = 51/56 (91.07%), Postives = 54/56 (96.43%), Query Frame = 0
Query:    1 SGNQQELTVSGYSCPRCKTKTSELPSECVICALPLVSSPHLARSYHHLFPVLPFEE 56
            SGN+QEL+VSGYSCPRCKTKTSELPSECVICALPLVSSPHLARSYHHLFPV  F+E
Sbjct:  275 SGNRQELSVSGYSCPRCKTKTSELPSECVICALPLVSSPHLARSYHHLFPVPQFDE 330          
BLAST of mRNA_H-paniculata_contig3323.8908.1 vs. uniprot
Match: A0A835ZF22_9STRA (General transcription factor IIH subunit n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZF22_9STRA)

HSP 1 Score: 97.8 bits (242), Expect = 8.940e-23
Identity = 45/56 (80.36%), Postives = 47/56 (83.93%), Query Frame = 0
Query:    1 SGNQQELTVSGYSCPRCKTKTSELPSECVICALPLVSSPHLARSYHHLFPVLPFEE 56
            SG QQ LT  GY CPRCK KT+ELPS C ICALPLVSSPHLARSYHHLFPV PF+E
Sbjct:  284 SGRQQTLTAQGYYCPRCKIKTTELPSTCEICALPLVSSPHLARSYHHLFPVPPFDE 339          
BLAST of mRNA_H-paniculata_contig3323.8908.1 vs. uniprot
Match: H9VRF2_PINTA (Uncharacterized protein (Fragment) n=3 Tax=Pinus subgen. Pinus TaxID=139271 RepID=H9VRF2_PINTA)

HSP 1 Score: 82.8 bits (203), Expect = 1.190e-19
Identity = 36/46 (78.26%), Postives = 39/46 (84.78%), Query Frame = 0
Query:   11 GYSCPRCKTKTSELPSECVICALPLVSSPHLARSYHHLFPVLPFEE 56
            GY+CPRCK +  ELP+EC IC L LVSSPHLARSYHHLFPV PFEE
Sbjct:    6 GYTCPRCKARACELPTECHICGLTLVSSPHLARSYHHLFPVTPFEE 51          
BLAST of mRNA_H-paniculata_contig3323.8908.1 vs. uniprot
Match: A0A2V0NPK1_9CHLO (General transcription factor IIH subunit n=1 Tax=Raphidocelis subcapitata TaxID=307507 RepID=A0A2V0NPK1_9CHLO)

HSP 1 Score: 86.3 bits (212), Expect = 2.100e-18
Identity = 37/55 (67.27%), Postives = 41/55 (74.55%), Query Frame = 0
Query:    2 GNQQELTVSGYSCPRCKTKTSELPSECVICALPLVSSPHLARSYHHLFPVLPFEE 56
            G   EL   GY+CPRCK +T ELP  C +C L L+SSPHLARSYHHLFPV PFEE
Sbjct:  291 GENPELLAGGYTCPRCKARTGELPCRCHVCGLTLISSPHLARSYHHLFPVEPFEE 345          
BLAST of mRNA_H-paniculata_contig3323.8908.1 vs. uniprot
Match: A0A418AXM0_9STRA (RING-type domain-containing protein n=5 Tax=Aphanomyces TaxID=100860 RepID=A0A418AXM0_9STRA)

HSP 1 Score: 84.0 bits (206), Expect = 5.010e-18
Identity = 35/52 (67.31%), Postives = 44/52 (84.62%), Query Frame = 0
Query:    5 QELTVSGYSCPRCKTKTSELPSECVICALPLVSSPHLARSYHHLFPVLPFEE 56
            Q  T  GY CPRCK+K+ ELP+ CV+C+LPLVSSPHLARSYHHLFP++ F++
Sbjct:  204 QTFTTLGYLCPRCKSKSCELPTVCVVCSLPLVSSPHLARSYHHLFPIVNFDK 255          
BLAST of mRNA_H-paniculata_contig3323.8908.1 vs. uniprot
Match: A0A835URS2_VANPL (Uncharacterized protein n=1 Tax=Vanilla planifolia TaxID=51239 RepID=A0A835URS2_VANPL)

HSP 1 Score: 81.3 bits (199), Expect = 8.280e-18
Identity = 34/46 (73.91%), Postives = 39/46 (84.78%), Query Frame = 0
Query:   11 GYSCPRCKTKTSELPSECVICALPLVSSPHLARSYHHLFPVLPFEE 56
            GY+CPRCK +  ELP+EC IC L LVSSPHLAR+YHHLFPV+PF E
Sbjct:   12 GYTCPRCKARVCELPTECQICGLALVSSPHLARTYHHLFPVMPFNE 57          
BLAST of mRNA_H-paniculata_contig3323.8908.1 vs. uniprot
Match: A0A835IM77_9MAGN (General transcription factor IIH subunit n=1 Tax=Coptis chinensis TaxID=261450 RepID=A0A835IM77_9MAGN)

HSP 1 Score: 84.3 bits (207), Expect = 9.100e-18
Identity = 36/52 (69.23%), Postives = 41/52 (78.85%), Query Frame = 0
Query:    5 QELTVSGYSCPRCKTKTSELPSECVICALPLVSSPHLARSYHHLFPVLPFEE 56
            +E  V GY+CPRCK +  ELP+EC IC L LVSSPHLARSYHHLFP+ PF E
Sbjct:  303 KEAKVGGYTCPRCKARVCELPTECQICGLTLVSSPHLARSYHHLFPITPFNE 354          
BLAST of mRNA_H-paniculata_contig3323.8908.1 vs. uniprot
Match: A0A392N9U5_9FABA (General transcription factor IIH subunit 2 (Fragment) n=1 Tax=Trifolium medium TaxID=97028 RepID=A0A392N9U5_9FABA)

HSP 1 Score: 82.4 bits (202), Expect = 1.220e-17
Identity = 34/54 (62.96%), Postives = 43/54 (79.63%), Query Frame = 0
Query:    3 NQQELTVSGYSCPRCKTKTSELPSECVICALPLVSSPHLARSYHHLFPVLPFEE 56
            +++  T  GY+CPRCK +  ELP+EC IC L L+SSPHLARSYHHLFP++PF E
Sbjct:  188 HEEAKTGGGYTCPRCKVRVCELPTECRICGLTLISSPHLARSYHHLFPIVPFAE 241          
BLAST of mRNA_H-paniculata_contig3323.8908.1 vs. uniprot
Match: A0A6D2IMA1_9BRAS (General transcription factor IIH subunit n=1 Tax=Microthlaspi erraticum TaxID=1685480 RepID=A0A6D2IMA1_9BRAS)

HSP 1 Score: 83.6 bits (205), Expect = 1.640e-17
Identity = 34/51 (66.67%), Postives = 41/51 (80.39%), Query Frame = 0
Query:    6 ELTVSGYSCPRCKTKTSELPSECVICALPLVSSPHLARSYHHLFPVLPFEE 56
            E  + GY+CPRCK +  +LP+EC IC L LVSSPHLARSYHHLFP+ PF+E
Sbjct:  292 EAKIGGYTCPRCKARICDLPTECTICGLTLVSSPHLARSYHHLFPIAPFDE 342          
BLAST of mRNA_H-paniculata_contig3323.8908.1 vs. uniprot
Match: A0A1U8GVY9_CAPAN (general transcription factor IIH subunit 2-like n=2 Tax=Capsicum annuum TaxID=4072 RepID=A0A1U8GVY9_CAPAN)

HSP 1 Score: 82.0 bits (201), Expect = 1.640e-17
Identity = 34/46 (73.91%), Postives = 40/46 (86.96%), Query Frame = 0
Query:   11 GYSCPRCKTKTSELPSECVICALPLVSSPHLARSYHHLFPVLPFEE 56
            GY+CPRCKT+  ELP+EC IC L LVSSPHLARSYHHLFP+ PF++
Sbjct:  145 GYTCPRCKTRICELPAECCICGLTLVSSPHLARSYHHLFPIRPFDD 190          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig3323.8908.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FRP7_ECTSI3.880e-2791.07General transcription factor IIH subunit n=2 Tax=E... [more]
A0A835ZF22_9STRA8.940e-2380.36General transcription factor IIH subunit n=1 Tax=T... [more]
H9VRF2_PINTA1.190e-1978.26Uncharacterized protein (Fragment) n=3 Tax=Pinus s... [more]
A0A2V0NPK1_9CHLO2.100e-1867.27General transcription factor IIH subunit n=1 Tax=R... [more]
A0A418AXM0_9STRA5.010e-1867.31RING-type domain-containing protein n=5 Tax=Aphano... [more]
A0A835URS2_VANPL8.280e-1873.91Uncharacterized protein n=1 Tax=Vanilla planifolia... [more]
A0A835IM77_9MAGN9.100e-1869.23General transcription factor IIH subunit n=1 Tax=C... [more]
A0A392N9U5_9FABA1.220e-1762.96General transcription factor IIH subunit 2 (Fragme... [more]
A0A6D2IMA1_9BRAS1.640e-1766.67General transcription factor IIH subunit n=1 Tax=M... [more]
A0A1U8GVY9_CAPAN1.640e-1773.91general transcription factor IIH subunit 2-like n=... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR012170TFIIH subunit Ssl1/p44TIGRFAMTIGR00622TIGR00622coord: 11..56
e-value: 4.3E-18
score: 64.0
NoneNo IPR availablePANTHERPTHR12695GENERAL TRANSCRIPTION FACTOR IIH SUBUNIT 2coord: 4..56

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig3323contigH-paniculata_contig3323:4930..5964 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig3323.8908.1mRNA_H-paniculata_contig3323.8908.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig3323 4930..5964 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig3323.8908.1 ID=prot_H-paniculata_contig3323.8908.1|Name=mRNA_H-paniculata_contig3323.8908.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=56bp
SGNQQELTVSGYSCPRCKTKTSELPSECVICALPLVSSPHLARSYHHLFP
VLPFEE
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR012170TFIIH_SSL1/p44