mRNA_H-paniculata_contig3323.8908.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig3323.8908.1
Unique NamemRNA_H-paniculata_contig3323.8908.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig3323.8908.1 vs. uniprot
Match: D7FRP7_ECTSI (General transcription factor IIH subunit n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FRP7_ECTSI)

HSP 1 Score: 109 bits (273), Expect = 3.880e-27
Identity = 51/56 (91.07%), Postives = 54/56 (96.43%), Query Frame = 1 
Query:    1 SGNQQELTVSGYSCPRCKTKTSELPSECVICALPLVSSPHLARSYHHLFPVLPFEE 168
            SGN+QEL+VSGYSCPRCKTKTSELPSECVICALPLVSSPHLARSYHHLFPV  F+E
Sbjct:  275 SGNRQELSVSGYSCPRCKTKTSELPSECVICALPLVSSPHLARSYHHLFPVPQFDE 330
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BLAST of mRNA_H-paniculata_contig3323.8908.1 vs. uniprot
Match: A0A835ZF22_9STRA (General transcription factor IIH subunit n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZF22_9STRA)

HSP 1 Score: 97.8 bits (242), Expect = 8.940e-23
Identity = 45/56 (80.36%), Postives = 47/56 (83.93%), Query Frame = 1 
Query:    1 SGNQQELTVSGYSCPRCKTKTSELPSECVICALPLVSSPHLARSYHHLFPVLPFEE 168
            SG QQ LT  GY CPRCK KT+ELPS C ICALPLVSSPHLARSYHHLFPV PF+E
Sbjct:  284 SGRQQTLTAQGYYCPRCKIKTTELPSTCEICALPLVSSPHLARSYHHLFPVPPFDE 339
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BLAST of mRNA_H-paniculata_contig3323.8908.1 vs. uniprot
Match: H9VRF2_PINTA (Uncharacterized protein (Fragment) n=3 Tax=Pinus subgen. Pinus TaxID=139271 RepID=H9VRF2_PINTA)

HSP 1 Score: 82.8 bits (203), Expect = 1.190e-19
Identity = 36/46 (78.26%), Postives = 39/46 (84.78%), Query Frame = 1 
Query:   31 GYSCPRCKTKTSELPSECVICALPLVSSPHLARSYHHLFPVLPFEE 168
            GY+CPRCK +  ELP+EC IC L LVSSPHLARSYHHLFPV PFEE
Sbjct:    6 GYTCPRCKARACELPTECHICGLTLVSSPHLARSYHHLFPVTPFEE 51
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BLAST of mRNA_H-paniculata_contig3323.8908.1 vs. uniprot
Match: A0A2V0NPK1_9CHLO (General transcription factor IIH subunit n=1 Tax=Raphidocelis subcapitata TaxID=307507 RepID=A0A2V0NPK1_9CHLO)

HSP 1 Score: 86.3 bits (212), Expect = 2.100e-18
Identity = 37/55 (67.27%), Postives = 41/55 (74.55%), Query Frame = 1 
Query:    4 GNQQELTVSGYSCPRCKTKTSELPSECVICALPLVSSPHLARSYHHLFPVLPFEE 168
            G   EL   GY+CPRCK +T ELP  C +C L L+SSPHLARSYHHLFPV PFEE
Sbjct:  291 GENPELLAGGYTCPRCKARTGELPCRCHVCGLTLISSPHLARSYHHLFPVEPFEE 345
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BLAST of mRNA_H-paniculata_contig3323.8908.1 vs. uniprot
Match: A0A418AXM0_9STRA (RING-type domain-containing protein n=5 Tax=Aphanomyces TaxID=100860 RepID=A0A418AXM0_9STRA)

HSP 1 Score: 84.0 bits (206), Expect = 5.010e-18
Identity = 35/52 (67.31%), Postives = 44/52 (84.62%), Query Frame = 1 
Query:   13 QELTVSGYSCPRCKTKTSELPSECVICALPLVSSPHLARSYHHLFPVLPFEE 168
            Q  T  GY CPRCK+K+ ELP+ CV+C+LPLVSSPHLARSYHHLFP++ F++
Sbjct:  204 QTFTTLGYLCPRCKSKSCELPTVCVVCSLPLVSSPHLARSYHHLFPIVNFDK 255
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BLAST of mRNA_H-paniculata_contig3323.8908.1 vs. uniprot
Match: A0A835URS2_VANPL (Uncharacterized protein n=1 Tax=Vanilla planifolia TaxID=51239 RepID=A0A835URS2_VANPL)

HSP 1 Score: 81.3 bits (199), Expect = 8.280e-18
Identity = 34/46 (73.91%), Postives = 39/46 (84.78%), Query Frame = 1 
Query:   31 GYSCPRCKTKTSELPSECVICALPLVSSPHLARSYHHLFPVLPFEE 168
            GY+CPRCK +  ELP+EC IC L LVSSPHLAR+YHHLFPV+PF E
Sbjct:   12 GYTCPRCKARVCELPTECQICGLALVSSPHLARTYHHLFPVMPFNE 57
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BLAST of mRNA_H-paniculata_contig3323.8908.1 vs. uniprot
Match: A0A835IM77_9MAGN (General transcription factor IIH subunit n=1 Tax=Coptis chinensis TaxID=261450 RepID=A0A835IM77_9MAGN)

HSP 1 Score: 84.3 bits (207), Expect = 9.100e-18
Identity = 36/52 (69.23%), Postives = 41/52 (78.85%), Query Frame = 1 
Query:   13 QELTVSGYSCPRCKTKTSELPSECVICALPLVSSPHLARSYHHLFPVLPFEE 168
            +E  V GY+CPRCK +  ELP+EC IC L LVSSPHLARSYHHLFP+ PF E
Sbjct:  303 KEAKVGGYTCPRCKARVCELPTECQICGLTLVSSPHLARSYHHLFPITPFNE 354
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BLAST of mRNA_H-paniculata_contig3323.8908.1 vs. uniprot
Match: A0A392N9U5_9FABA (General transcription factor IIH subunit 2 (Fragment) n=1 Tax=Trifolium medium TaxID=97028 RepID=A0A392N9U5_9FABA)

HSP 1 Score: 82.4 bits (202), Expect = 1.220e-17
Identity = 34/54 (62.96%), Postives = 43/54 (79.63%), Query Frame = 1 
Query:    7 NQQELTVSGYSCPRCKTKTSELPSECVICALPLVSSPHLARSYHHLFPVLPFEE 168
            +++  T  GY+CPRCK +  ELP+EC IC L L+SSPHLARSYHHLFP++PF E
Sbjct:  188 HEEAKTGGGYTCPRCKVRVCELPTECRICGLTLISSPHLARSYHHLFPIVPFAE 241
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BLAST of mRNA_H-paniculata_contig3323.8908.1 vs. uniprot
Match: A0A6D2IMA1_9BRAS (General transcription factor IIH subunit n=1 Tax=Microthlaspi erraticum TaxID=1685480 RepID=A0A6D2IMA1_9BRAS)

HSP 1 Score: 83.6 bits (205), Expect = 1.640e-17
Identity = 34/51 (66.67%), Postives = 41/51 (80.39%), Query Frame = 1 
Query:   16 ELTVSGYSCPRCKTKTSELPSECVICALPLVSSPHLARSYHHLFPVLPFEE 168
            E  + GY+CPRCK +  +LP+EC IC L LVSSPHLARSYHHLFP+ PF+E
Sbjct:  292 EAKIGGYTCPRCKARICDLPTECTICGLTLVSSPHLARSYHHLFPIAPFDE 342
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BLAST of mRNA_H-paniculata_contig3323.8908.1 vs. uniprot
Match: A0A1U8GVY9_CAPAN (general transcription factor IIH subunit 2-like n=2 Tax=Capsicum annuum TaxID=4072 RepID=A0A1U8GVY9_CAPAN)

HSP 1 Score: 82.0 bits (201), Expect = 1.640e-17
Identity = 34/46 (73.91%), Postives = 40/46 (86.96%), Query Frame = 1 
Query:   31 GYSCPRCKTKTSELPSECVICALPLVSSPHLARSYHHLFPVLPFEE 168
            GY+CPRCKT+  ELP+EC IC L LVSSPHLARSYHHLFP+ PF++
Sbjct:  145 GYTCPRCKTRICELPAECCICGLTLVSSPHLARSYHHLFPIRPFDD 190
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig3323.8908.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FRP7_ECTSI3.880e-2791.07General transcription factor IIH subunit n=2 Tax=E... [more]
A0A835ZF22_9STRA8.940e-2380.36General transcription factor IIH subunit n=1 Tax=T... [more]
H9VRF2_PINTA1.190e-1978.26Uncharacterized protein (Fragment) n=3 Tax=Pinus s... [more]
A0A2V0NPK1_9CHLO2.100e-1867.27General transcription factor IIH subunit n=1 Tax=R... [more]
A0A418AXM0_9STRA5.010e-1867.31RING-type domain-containing protein n=5 Tax=Aphano... [more]
A0A835URS2_VANPL8.280e-1873.91Uncharacterized protein n=1 Tax=Vanilla planifolia... [more]
A0A835IM77_9MAGN9.100e-1869.23General transcription factor IIH subunit n=1 Tax=C... [more]
A0A392N9U5_9FABA1.220e-1762.96General transcription factor IIH subunit 2 (Fragme... [more]
A0A6D2IMA1_9BRAS1.640e-1766.67General transcription factor IIH subunit n=1 Tax=M... [more]
A0A1U8GVY9_CAPAN1.640e-1773.91general transcription factor IIH subunit 2-like n=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig3323contigH-paniculata_contig3323:4930..5964 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score111.7
Seed ortholog evalue1.1e-22
Seed eggNOG ortholog2880.D7FRP7
Preferred nameGTF2H2
KEGG rclassRC00002,RC00078
KEGG koko:K00889,ko:K01177,ko:K03142,ko:K14766
KEGG ReactionR02112,R03469,R11262
KEGG Pathwayko00500,ko00562,ko01100,ko03022,ko03420,ko04011,ko04070,ko04072,ko04139,ko04144,ko04666,ko04810,ko05203,ko05231,map00500,map00562,map01100,map03022,map03420,map04011,map04070,map04072,map04139,map04144,map04666,map04810,map05203,map05231
KEGG ModuleM00130,M00290
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0000109,GO:0000112,GO:0000428,GO:0000438,GO:0000439,GO:0000988,GO:0000990,GO:0000991,GO:0001109,GO:0001111,GO:0001112,GO:0001113,GO:0001120,GO:0002029,GO:0002031,GO:0003674,GO:0003676,GO:0003700,GO:0003723,GO:0003824,GO:0004842,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005667,GO:0005669,GO:0005675,GO:0006139,GO:0006259,GO:0006281,GO:0006283,GO:0006289,GO:0006293,GO:0006294,GO:0006296,GO:0006351,GO:0006352,GO:0006353,GO:0006354,GO:0006355,GO:0006357,GO:0006360,GO:0006361,GO:0006363,GO:0006366,GO:0006367,GO:0006368,GO:0006370,GO:0006396,GO:0006397,GO:0006412,GO:0006464,GO:0006468,GO:0006518,GO:0006725,GO:0006793,GO:0006796,GO:0006807,GO:0006810,GO:0006897,GO:0006898,GO:0006950,GO:0006974,GO:0008135,GO:0008150,GO:0008152,GO:0008277,GO:0009058,GO:0009059,GO:0009314,GO:0009411,GO:0009416,GO:0009452,GO:0009628,GO:0009889,GO:0009966,GO:0009968,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0010646,GO:0010648,GO:0016043,GO:0016070,GO:0016071,GO:0016192,GO:0016310,GO:0016567,GO:0016591,GO:0016604,GO:0016607,GO:0016740,GO:0018130,GO:0019219,GO:0019222,GO:0019438,GO:0019538,GO:0019787,GO:0022401,GO:0022607,GO:0023051,GO:0023057,GO:0023058,GO:0030880,GO:0031323,GO:0031326,GO:0031334,GO:0031623,GO:0031974,GO:0031981,GO:0032446,GO:0032774,GO:0032806,GO:0032991,GO:0033554,GO:0033683,GO:0034367,GO:0034622,GO:0034641,GO:0034645,GO:0034654,GO:0036211,GO:0036260,GO:0043043,GO:0043112,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043254,GO:0043412,GO:0043603,GO:0043604,GO:0043933,GO:0044085,GO:0044087,GO:0044089,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044451,GO:0044464,GO:0044798,GO:0045744,GO:0046483,GO:0047485,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048583,GO:0048585,GO:0050789,GO:0050794,GO:0050896,GO:0051128,GO:0051130,GO:0051171,GO:0051179,GO:0051234,GO:0051252,GO:0051716,GO:0055029,GO:0060255,GO:0061630,GO:0061659,GO:0061695,GO:0065003,GO:0065004,GO:0065007,GO:0070013,GO:0070647,GO:0070816,GO:0070911,GO:0071704,GO:0071824,GO:0071840,GO:0080090,GO:0090304,GO:0090305,GO:0090575,GO:0097159,GO:0097659,GO:0098657,GO:0140096,GO:0140110,GO:1901360,GO:1901362,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1902494,GO:1902554,GO:1902911,GO:1903506,GO:1990234,GO:1990391,GO:2000112,GO:2001141
EggNOG free text desc.nucleotide-excision repair
EggNOG OGsCOG5151@1,KOG2807@2759
EC2.7.1.68,3.2.1.2
COG Functional cat.KL
CAZyGH14
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko03009,ko03021,ko03400,ko04131
Exons2
Model size168
Cds size168
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930026.859374-CDS-H-paniculata_contig3323:4929..50341622930026.859374-CDS-H-paniculata_contig3323:4929..5034Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3323 4930..5034 +
1691481116.047416-CDS-H-paniculata_contig3323:4929..50341691481116.047416-CDS-H-paniculata_contig3323:4929..5034Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3323 4930..5034 +
1622930026.8792822-CDS-H-paniculata_contig3323:5901..59641622930026.8792822-CDS-H-paniculata_contig3323:5901..5964Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3323 5902..5964 +
1691481116.0607667-CDS-H-paniculata_contig3323:5901..59641691481116.0607667-CDS-H-paniculata_contig3323:5901..5964Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3323 5902..5964 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig3323.8908.1prot_H-paniculata_contig3323.8908.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig3323 4930..5964 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig3323.8908.1

>prot_H-paniculata_contig3323.8908.1 ID=prot_H-paniculata_contig3323.8908.1|Name=mRNA_H-paniculata_contig3323.8908.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=56bp
SGNQQELTVSGYSCPRCKTKTSELPSECVICALPLVSSPHLARSYHHLFP
VLPFEE
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mRNA from alignment at H-paniculata_contig3323:4930..5964+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig3323.8908.1 ID=mRNA_H-paniculata_contig3323.8908.1|Name=mRNA_H-paniculata_contig3323.8908.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1035bp|location=Sequence derived from alignment at H-paniculata_contig3323:4930..5964+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AGCGGGAATCAACAGGAACTCACGGTGTCGGGGTATAGCTGCCCCCGCTG
CAAAACGAAAACGTCGGAGCTTCCTTCGGAGTGCGTGATTTGTGCTCTCC
CCTTGGTGAGGTTTGTGTTTTCTTGTTGATTCTGTTCAGTTCTGGACGCT
GTTTTTTTAAGGGAAAATAGTGAGTTGGAGCGTGTGGTGTGAGGATAGGC
AAATGCCCGAAGAATCTGTCAGTGTTGCCTGATGATAGAAGTCTCTTTTC
CTCCCCCTTGTTTTTCGCTTGAACGGACCGTACGACTGAACTACCGTGGT
CGTCTCTATATTTTGAGGGTGAAGGAAAGAGCAACAGCTCGCACAACAAA
GTGGTCATGTTTTACACTCGAAACAAAGTAGAGATCAATTTTGTCAAAAG
CGATCTAGCAGCACCCCTCCTTACCGATCTATTTTTGCTGATAGCTCTGT
ACAACCGAACTTTCAAGTCAGCTGTATAACCTCAACATGCCTACAGTGGA
GTTATAATGTAAGGTTCAGAGCTGTGGTTCAATTACCTGTGGCAGGATAC
CCCCCCCCTGCCCCACCCTCTCCAAGATCTTTGTTTCGTTTCAAGCGCTC
CTTCGCAGTAATCATAAAACGTCCCGCCCCTCCGCTCTCTCGAGCGTTCG
CGAGCAATAGTCTACATACCTTTTGAAGGCACGCGTTTTATGAGGACGCC
CCCCACCGTTCTGCCCCTCACCCTTCACTTGTTAATTTTGGTCCGTTTGT
AGATATGTCAGTTCAGTCAGCAAAATTGAAATGACCAAGCATGCCTACGT
CTTGTTTTCGCGGCTTTCATTTGAACGTTTTCTCAATTCGGAAATACTGT
TTCCAACTGTTTGTTGCTGCTGTCACTTGACTGTACTACTGTCTGTTATC
AAATCTCATTTTTTCACAACTCCCGCCGCCCTCCGATCCTTCCGGCGCGC
GCTCTCTGCTTTGCGCTTGCAGGTGTCTTCACCGCACCTTGCACGCTCTT
ATCATCATCTCTTCCCTGTGCTTCCTTTTGAAGAA
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Coding sequence (CDS) from alignment at H-paniculata_contig3323:4930..5964+

>mRNA_H-paniculata_contig3323.8908.1 ID=mRNA_H-paniculata_contig3323.8908.1|Name=mRNA_H-paniculata_contig3323.8908.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=336bp|location=Sequence derived from alignment at H-paniculata_contig3323:4930..5964+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AGCGGGAATCAACAGGAACTCACGGTGTCGGGGTATAGCTGCCCCCGCTG
CAAAACGAAAACGTCGGAGCTTCCTTCGGAGTGCGTGATTTGTGCTCTCC
CCTTGAGCGGGAATCAACAGGAACTCACGGTGTCGGGGTATAGCTGCCCC
CGCTGCAAAACGAAAACGTCGGAGCTTCCTTCGGAGTGCGTGATTTGTGC
TCTCCCCTTGGTGTCTTCACCGCACCTTGCACGCTCTTATCATCATCTCT
TCCCTGTGCTTCCTTTTGAAGAAGTGTCTTCACCGCACCTTGCACGCTCT
TATCATCATCTCTTCCCTGTGCTTCCTTTTGAAGAA
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