prot_H-paniculata_contig31729.8546.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig31729.8546.1
Unique Nameprot_H-paniculata_contig31729.8546.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length47
Homology
BLAST of mRNA_H-paniculata_contig31729.8546.1 vs. uniprot
Match: A0A7S2VXQ2_9STRA (Hypothetical protein (Fragment) n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2VXQ2_9STRA)

HSP 1 Score: 53.1 bits (126), Expect = 4.740e-7
Identity = 21/42 (50.00%), Postives = 33/42 (78.57%), Query Frame = 0
Query:    3 LELMKRMSREGLNPDVISYNTAITACAGAGQWKQALTLVEQV 44
            L+L+++M  EG+ PD  SY+ AI+ACA AG+WK+AL L++ +
Sbjct:  167 LDLLQQMMEEGIEPDAYSYSAAISACAPAGRWKEALKLIKHM 208          
BLAST of mRNA_H-paniculata_contig31729.8546.1 vs. uniprot
Match: A0A448ZHH6_9STRA (Uncharacterized protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448ZHH6_9STRA)

HSP 1 Score: 48.1 bits (113), Expect = 4.300e-5
Identity = 20/37 (54.05%), Postives = 27/37 (72.97%), Query Frame = 0
Query:    7 KRMSREGLNPDVISYNTAITACAGAGQWKQALTLVEQ 43
            K     GL PD ISYN AI+ACA AG+WK+AL ++++
Sbjct:  405 KDQPSSGLQPDEISYNAAISACASAGKWKEALRVLDE 441          
BLAST of mRNA_H-paniculata_contig31729.8546.1 vs. uniprot
Match: A0A1E7FEB6_9STRA (Uncharacterized protein n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FEB6_9STRA)

HSP 1 Score: 47.4 bits (111), Expect = 8.030e-5
Identity = 18/44 (40.91%), Postives = 34/44 (77.27%), Query Frame = 0
Query:    2 TLELMKRMSREGLNPDVISYNTAITACAGAGQWKQALTLVEQVI 45
            +L L +RM+ EGL PDV ++++ I++C  AG+W++AL +++ +I
Sbjct:  241 SLALFRRMTEEGLTPDVQTHSSIISSCEAAGEWQRALWVLQTII 284          
BLAST of mRNA_H-paniculata_contig31729.8546.1 vs. uniprot
Match: A0A448ZGJ8_9STRA (Smr domain-containing protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448ZGJ8_9STRA)

HSP 1 Score: 47.4 bits (111), Expect = 8.060e-5
Identity = 18/44 (40.91%), Postives = 34/44 (77.27%), Query Frame = 0
Query:    2 TLELMKRMSREGLNPDVISYNTAITACAGAGQWKQALTLVEQVI 45
            +L L +RM+ EGL PDV ++++ I++C  AG+W++AL +++ +I
Sbjct:  965 SLALYRRMTEEGLKPDVQTHSSIISSCEAAGEWQRALWVLQSII 1008          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig31729.8546.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A7S2VXQ2_9STRA4.740e-750.00Hypothetical protein (Fragment) n=1 Tax=Eucampia a... [more]
A0A448ZHH6_9STRA4.300e-554.05Uncharacterized protein n=1 Tax=Pseudo-nitzschia m... [more]
A0A1E7FEB6_9STRA8.030e-540.91Uncharacterized protein n=1 Tax=Fragilariopsis cyl... [more]
A0A448ZGJ8_9STRA8.060e-540.91Smr domain-containing protein n=1 Tax=Pseudo-nitzs... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002885Pentatricopeptide repeatPFAMPF12854PPR_1coord: 13..43
e-value: 2.6E-5
score: 23.8
IPR002885Pentatricopeptide repeatTIGRFAMTIGR00756TIGR00756coord: 19..43
e-value: 4.3E-4
score: 18.3
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10coord: 1..45
e-value: 1.6E-10
score: 42.6
NoneNo IPR availablePROSITEPS51257PROKAR_LIPOPROTEINcoord: 1..28
score: 5.0

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig31729contigH-paniculata_contig31729:2263..2403 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig31729.8546.1mRNA_H-paniculata_contig31729.8546.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig31729 2263..2430 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig31729.8546.1 ID=prot_H-paniculata_contig31729.8546.1|Name=mRNA_H-paniculata_contig31729.8546.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=47bp
MTLELMKRMSREGLNPDVISYNTAITACAGAGQWKQALTLVEQVIF*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR002885Pentatricopeptide_repeat
IPR011990TPR-like_helical_dom_sf