mRNA_H-paniculata_contig31729.8546.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig31729.8546.1
Unique NamemRNA_H-paniculata_contig31729.8546.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig31729.8546.1 vs. uniprot
Match: A0A7S2VXQ2_9STRA (Hypothetical protein (Fragment) n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2VXQ2_9STRA)

HSP 1 Score: 56.6 bits (135), Expect = 3.540e-8
Identity = 22/46 (47.83%), Postives = 34/46 (73.91%), Query Frame = 1
Query:   22 WKMTLELMKRMSREGLNPDVISYNTAITACAGAGQWKQALTLVEQV 159
            W   L+L+++M  EG+ PD  SY+ AI+ACA AG+WK+AL L++ +
Sbjct:  163 WMKALDLLQQMMEEGIEPDAYSYSAAISACAPAGRWKEALKLIKHM 208          
BLAST of mRNA_H-paniculata_contig31729.8546.1 vs. uniprot
Match: A0A812IFC2_9DINO (Hypothetical protein n=1 Tax=Symbiodinium sp. CCMP2592 TaxID=631055 RepID=A0A812IFC2_9DINO)

HSP 1 Score: 55.1 bits (131), Expect = 1.440e-7
Identity = 26/54 (48.15%), Postives = 36/54 (66.67%), Query Frame = 1
Query:    1 ACGAGQQWKMTLELMKRMSREGLNPDVISYNTAITACAGAGQWKQALTLVEQVI 162
            AC  G+QW+M L L+  M    L PDV+SY+ AI+AC   GQW  AL LV++++
Sbjct:   19 ACEKGRQWEMVLWLLATMPSLRLEPDVVSYSAAISACEH-GQWTMALQLVDEMV 71          
BLAST of mRNA_H-paniculata_contig31729.8546.1 vs. uniprot
Match: A0A448ZGJ8_9STRA (Smr domain-containing protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448ZGJ8_9STRA)

HSP 1 Score: 52.8 bits (125), Expect = 1.490e-6
Identity = 20/49 (40.82%), Postives = 37/49 (75.51%), Query Frame = 1
Query:   16 QQWKMTLELMKRMSREGLNPDVISYNTAITACAGAGQWKQALTLVEQVI 162
            Q W+ +L L +RM+ EGL PDV ++++ I++C  AG+W++AL +++ +I
Sbjct:  960 QWWECSLALYRRMTEEGLKPDVQTHSSIISSCEAAGEWQRALWVLQSII 1008          
BLAST of mRNA_H-paniculata_contig31729.8546.1 vs. uniprot
Match: A0A7S4ATP8_9STRA (Hypothetical protein n=1 Tax=Pseudo-nitzschia australis TaxID=44445 RepID=A0A7S4ATP8_9STRA)

HSP 1 Score: 52.4 bits (124), Expect = 2.040e-6
Identity = 20/49 (40.82%), Postives = 37/49 (75.51%), Query Frame = 1
Query:   16 QQWKMTLELMKRMSREGLNPDVISYNTAITACAGAGQWKQALTLVEQVI 162
            Q W+ +L L +RM+ EGL PDV ++++ I++C  AG+W++AL +++ +I
Sbjct:  952 QWWECSLALYRRMTEEGLKPDVQTHSSIISSCEAAGEWQRALWVLQTII 1000          
BLAST of mRNA_H-paniculata_contig31729.8546.1 vs. uniprot
Match: A0A1E7FEB6_9STRA (Uncharacterized protein n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FEB6_9STRA)

HSP 1 Score: 51.6 bits (122), Expect = 3.770e-6
Identity = 19/47 (40.43%), Postives = 36/47 (76.60%), Query Frame = 1
Query:   22 WKMTLELMKRMSREGLNPDVISYNTAITACAGAGQWKQALTLVEQVI 162
            W+ +L L +RM+ EGL PDV ++++ I++C  AG+W++AL +++ +I
Sbjct:  238 WECSLALFRRMTEEGLTPDVQTHSSIISSCEAAGEWQRALWVLQTII 284          
BLAST of mRNA_H-paniculata_contig31729.8546.1 vs. uniprot
Match: A0A813CG79_9DINO (COMT protein n=1 Tax=Symbiodinium sp. KB8 TaxID=230985 RepID=A0A813CG79_9DINO)

HSP 1 Score: 51.2 bits (121), Expect = 5.200e-6
Identity = 22/53 (41.51%), Postives = 36/53 (67.92%), Query Frame = 1
Query:    1 ACGAGQQWKMTLELMKRMSREGLNPDVISYNTAITACAGAGQWKQALTLVEQV 159
            A  AG QW   LEL+   S++ L PD+I+YNTA++AC  + +W++A  L+ ++
Sbjct:  335 AAEAGHQWPWALELLF-FSKKELRPDIITYNTAVSACEKSSEWQRAFLLLREL 386          
BLAST of mRNA_H-paniculata_contig31729.8546.1 vs. uniprot
Match: W7TN84_9STRA (Pentatricopeptide repeat containing protein n=5 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TN84_9STRA)

HSP 1 Score: 50.1 bits (118), Expect = 1.340e-5
Identity = 23/54 (42.59%), Postives = 37/54 (68.52%), Query Frame = 1
Query:    1 ACGAGQQWKMTLELMKRMS-REGLNPDVISYNTAITACAGAGQWKQALTLVEQV 159
            AC AG +WK  ++L++ M  +EG+ PD+ S+NTA++AC  AGQ  Q   L+ ++
Sbjct:  817 ACDAGGEWKAAVKLVEDMRVKEGIRPDLYSFNTAVSACQKAGQVVQITRLLGRM 870          
BLAST of mRNA_H-paniculata_contig31729.8546.1 vs. uniprot
Match: A0A448ZHH6_9STRA (Uncharacterized protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448ZHH6_9STRA)

HSP 1 Score: 48.9 bits (115), Expect = 3.420e-5
Identity = 23/52 (44.23%), Postives = 34/52 (65.38%), Query Frame = 1
Query:   10 AGQQWKMTLELMKRMSRE---GLNPDVISYNTAITACAGAGQWKQALTLVEQ 156
            AGQ  ++   L  +   +   GL PD ISYN AI+ACA AG+WK+AL ++++
Sbjct:  390 AGQCQRLLQRLQSKFKDQPSSGLQPDEISYNAAISACASAGKWKEALRVLDE 441          
BLAST of mRNA_H-paniculata_contig31729.8546.1 vs. uniprot
Match: A0A4D9CRR1_9STRA (PPR_long domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CRR1_9STRA)

HSP 1 Score: 48.9 bits (115), Expect = 3.440e-5
Identity = 22/54 (40.74%), Postives = 37/54 (68.52%), Query Frame = 1
Query:    1 ACGAGQQWKMTLELMKRMS-REGLNPDVISYNTAITACAGAGQWKQALTLVEQV 159
            AC AG +WK  ++L++ M  ++G+ PD+ S+NTA++AC  AGQ  Q   L+ ++
Sbjct:  753 ACDAGGEWKAAVKLVEDMRVKQGIRPDLYSFNTAVSACQKAGQVVQITRLLGRM 806          
BLAST of mRNA_H-paniculata_contig31729.8546.1 vs. uniprot
Match: A0A812RAC1_9DINO (Hypothetical protein n=1 Tax=Symbiodinium natans TaxID=878477 RepID=A0A812RAC1_9DINO)

HSP 1 Score: 47.8 bits (112), Expect = 8.760e-5
Identity = 20/53 (37.74%), Postives = 35/53 (66.04%), Query Frame = 1
Query:    1 ACGAGQQWKMTLELMKRMSREGLNPDVISYNTAITACAGAGQWKQALTLVEQV 159
            AC   ++W+ +L++    S E ++PD+  +N AI+AC   G WK ALTL++++
Sbjct:  341 ACARSRRWQRSLQIFWE-SAETISPDLAYFNAAISACERGGDWKGALTLLQEL 392          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig31729.8546.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 10
Match NameE-valueIdentityDescription
A0A7S2VXQ2_9STRA3.540e-847.83Hypothetical protein (Fragment) n=1 Tax=Eucampia a... [more]
A0A812IFC2_9DINO1.440e-748.15Hypothetical protein n=1 Tax=Symbiodinium sp. CCMP... [more]
A0A448ZGJ8_9STRA1.490e-640.82Smr domain-containing protein n=1 Tax=Pseudo-nitzs... [more]
A0A7S4ATP8_9STRA2.040e-640.82Hypothetical protein n=1 Tax=Pseudo-nitzschia aust... [more]
A0A1E7FEB6_9STRA3.770e-640.43Uncharacterized protein n=1 Tax=Fragilariopsis cyl... [more]
A0A813CG79_9DINO5.200e-641.51COMT protein n=1 Tax=Symbiodinium sp. KB8 TaxID=23... [more]
W7TN84_9STRA1.340e-542.59Pentatricopeptide repeat containing protein n=5 Ta... [more]
A0A448ZHH6_9STRA3.420e-544.23Uncharacterized protein n=1 Tax=Pseudo-nitzschia m... [more]
A0A4D9CRR1_9STRA3.440e-540.74PPR_long domain-containing protein n=1 Tax=Nannoch... [more]
A0A812RAC1_9DINO8.760e-537.74Hypothetical protein n=1 Tax=Symbiodinium natans T... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig31729contigH-paniculata_contig31729:2263..2430 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size168
Cds size141
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929977.0980237-CDS-H-paniculata_contig31729:2262..24031622929977.0980237-CDS-H-paniculata_contig31729:2262..2403Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig31729 2263..2403 -
1691481094.7747853-CDS-H-paniculata_contig31729:2262..24031691481094.7747853-CDS-H-paniculata_contig31729:2262..2403Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig31729 2263..2403 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929977.1116285-UTR-H-paniculata_contig31729:2403..24301622929977.1116285-UTR-H-paniculata_contig31729:2403..2430Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig31729 2404..2430 -
1691481094.7840617-UTR-H-paniculata_contig31729:2403..24301691481094.7840617-UTR-H-paniculata_contig31729:2403..2430Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig31729 2404..2430 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig31729.8546.1prot_H-paniculata_contig31729.8546.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig31729 2263..2403 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig31729.8546.1

>prot_H-paniculata_contig31729.8546.1 ID=prot_H-paniculata_contig31729.8546.1|Name=mRNA_H-paniculata_contig31729.8546.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=47bp
MTLELMKRMSREGLNPDVISYNTAITACAGAGQWKQALTLVEQVIF*
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mRNA from alignment at H-paniculata_contig31729:2263..2430-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig31729.8546.1 ID=mRNA_H-paniculata_contig31729.8546.1|Name=mRNA_H-paniculata_contig31729.8546.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=168bp|location=Sequence derived from alignment at H-paniculata_contig31729:2263..2430- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GCATGTGGCGCCGGGCAACAGTGGAAAATGACACTGGAGCTCATGAAGCG GATGTCTCGAGAGGGCTTGAATCCGGACGTGATATCGTACAACACGGCCA TCACTGCGTGCGCGGGCGCAGGGCAGTGGAAGCAGGCGTTGACGCTGGTG GAGCAGGTAATTTTTTAA
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Coding sequence (CDS) from alignment at H-paniculata_contig31729:2263..2430-

>mRNA_H-paniculata_contig31729.8546.1 ID=mRNA_H-paniculata_contig31729.8546.1|Name=mRNA_H-paniculata_contig31729.8546.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=282bp|location=Sequence derived from alignment at H-paniculata_contig31729:2263..2430- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGACACTGGAGCTCATGAAGCGGATGTCTCGAGAGGGCTTGAATCCGGA
CGTGATATCGTACAACACGGCCATCACTGCGTGCGCGGGCGCAGGGCAGT
GGAAGCAGGCGTTGACGCTGGTGGAGCAGGTAATTTTTTAAATGACACTG
GAGCTCATGAAGCGGATGTCTCGAGAGGGCTTGAATCCGGACGTGATATC
GTACAACACGGCCATCACTGCGTGCGCGGGCGCAGGGCAGTGGAAGCAGG
CGTTGACGCTGGTGGAGCAGGTAATTTTTTAA
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