mRNA_H-paniculata_contig31729.8546.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig31729.8546.1 vs. uniprot
Match: A0A7S2VXQ2_9STRA (Hypothetical protein (Fragment) n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2VXQ2_9STRA) HSP 1 Score: 56.6 bits (135), Expect = 3.540e-8 Identity = 22/46 (47.83%), Postives = 34/46 (73.91%), Query Frame = 1
Query: 22 WKMTLELMKRMSREGLNPDVISYNTAITACAGAGQWKQALTLVEQV 159
W L+L+++M EG+ PD SY+ AI+ACA AG+WK+AL L++ +
Sbjct: 163 WMKALDLLQQMMEEGIEPDAYSYSAAISACAPAGRWKEALKLIKHM 208
BLAST of mRNA_H-paniculata_contig31729.8546.1 vs. uniprot
Match: A0A812IFC2_9DINO (Hypothetical protein n=1 Tax=Symbiodinium sp. CCMP2592 TaxID=631055 RepID=A0A812IFC2_9DINO) HSP 1 Score: 55.1 bits (131), Expect = 1.440e-7 Identity = 26/54 (48.15%), Postives = 36/54 (66.67%), Query Frame = 1
Query: 1 ACGAGQQWKMTLELMKRMSREGLNPDVISYNTAITACAGAGQWKQALTLVEQVI 162
AC G+QW+M L L+ M L PDV+SY+ AI+AC GQW AL LV++++
Sbjct: 19 ACEKGRQWEMVLWLLATMPSLRLEPDVVSYSAAISACEH-GQWTMALQLVDEMV 71
BLAST of mRNA_H-paniculata_contig31729.8546.1 vs. uniprot
Match: A0A448ZGJ8_9STRA (Smr domain-containing protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448ZGJ8_9STRA) HSP 1 Score: 52.8 bits (125), Expect = 1.490e-6 Identity = 20/49 (40.82%), Postives = 37/49 (75.51%), Query Frame = 1
Query: 16 QQWKMTLELMKRMSREGLNPDVISYNTAITACAGAGQWKQALTLVEQVI 162
Q W+ +L L +RM+ EGL PDV ++++ I++C AG+W++AL +++ +I
Sbjct: 960 QWWECSLALYRRMTEEGLKPDVQTHSSIISSCEAAGEWQRALWVLQSII 1008
BLAST of mRNA_H-paniculata_contig31729.8546.1 vs. uniprot
Match: A0A7S4ATP8_9STRA (Hypothetical protein n=1 Tax=Pseudo-nitzschia australis TaxID=44445 RepID=A0A7S4ATP8_9STRA) HSP 1 Score: 52.4 bits (124), Expect = 2.040e-6 Identity = 20/49 (40.82%), Postives = 37/49 (75.51%), Query Frame = 1
Query: 16 QQWKMTLELMKRMSREGLNPDVISYNTAITACAGAGQWKQALTLVEQVI 162
Q W+ +L L +RM+ EGL PDV ++++ I++C AG+W++AL +++ +I
Sbjct: 952 QWWECSLALYRRMTEEGLKPDVQTHSSIISSCEAAGEWQRALWVLQTII 1000
BLAST of mRNA_H-paniculata_contig31729.8546.1 vs. uniprot
Match: A0A1E7FEB6_9STRA (Uncharacterized protein n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FEB6_9STRA) HSP 1 Score: 51.6 bits (122), Expect = 3.770e-6 Identity = 19/47 (40.43%), Postives = 36/47 (76.60%), Query Frame = 1
Query: 22 WKMTLELMKRMSREGLNPDVISYNTAITACAGAGQWKQALTLVEQVI 162
W+ +L L +RM+ EGL PDV ++++ I++C AG+W++AL +++ +I
Sbjct: 238 WECSLALFRRMTEEGLTPDVQTHSSIISSCEAAGEWQRALWVLQTII 284
BLAST of mRNA_H-paniculata_contig31729.8546.1 vs. uniprot
Match: A0A813CG79_9DINO (COMT protein n=1 Tax=Symbiodinium sp. KB8 TaxID=230985 RepID=A0A813CG79_9DINO) HSP 1 Score: 51.2 bits (121), Expect = 5.200e-6 Identity = 22/53 (41.51%), Postives = 36/53 (67.92%), Query Frame = 1
Query: 1 ACGAGQQWKMTLELMKRMSREGLNPDVISYNTAITACAGAGQWKQALTLVEQV 159
A AG QW LEL+ S++ L PD+I+YNTA++AC + +W++A L+ ++
Sbjct: 335 AAEAGHQWPWALELLF-FSKKELRPDIITYNTAVSACEKSSEWQRAFLLLREL 386
BLAST of mRNA_H-paniculata_contig31729.8546.1 vs. uniprot
Match: W7TN84_9STRA (Pentatricopeptide repeat containing protein n=5 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TN84_9STRA) HSP 1 Score: 50.1 bits (118), Expect = 1.340e-5 Identity = 23/54 (42.59%), Postives = 37/54 (68.52%), Query Frame = 1
Query: 1 ACGAGQQWKMTLELMKRMS-REGLNPDVISYNTAITACAGAGQWKQALTLVEQV 159
AC AG +WK ++L++ M +EG+ PD+ S+NTA++AC AGQ Q L+ ++
Sbjct: 817 ACDAGGEWKAAVKLVEDMRVKEGIRPDLYSFNTAVSACQKAGQVVQITRLLGRM 870
BLAST of mRNA_H-paniculata_contig31729.8546.1 vs. uniprot
Match: A0A448ZHH6_9STRA (Uncharacterized protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448ZHH6_9STRA) HSP 1 Score: 48.9 bits (115), Expect = 3.420e-5 Identity = 23/52 (44.23%), Postives = 34/52 (65.38%), Query Frame = 1
Query: 10 AGQQWKMTLELMKRMSRE---GLNPDVISYNTAITACAGAGQWKQALTLVEQ 156
AGQ ++ L + + GL PD ISYN AI+ACA AG+WK+AL ++++
Sbjct: 390 AGQCQRLLQRLQSKFKDQPSSGLQPDEISYNAAISACASAGKWKEALRVLDE 441
BLAST of mRNA_H-paniculata_contig31729.8546.1 vs. uniprot
Match: A0A4D9CRR1_9STRA (PPR_long domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CRR1_9STRA) HSP 1 Score: 48.9 bits (115), Expect = 3.440e-5 Identity = 22/54 (40.74%), Postives = 37/54 (68.52%), Query Frame = 1
Query: 1 ACGAGQQWKMTLELMKRMS-REGLNPDVISYNTAITACAGAGQWKQALTLVEQV 159
AC AG +WK ++L++ M ++G+ PD+ S+NTA++AC AGQ Q L+ ++
Sbjct: 753 ACDAGGEWKAAVKLVEDMRVKQGIRPDLYSFNTAVSACQKAGQVVQITRLLGRM 806
BLAST of mRNA_H-paniculata_contig31729.8546.1 vs. uniprot
Match: A0A812RAC1_9DINO (Hypothetical protein n=1 Tax=Symbiodinium natans TaxID=878477 RepID=A0A812RAC1_9DINO) HSP 1 Score: 47.8 bits (112), Expect = 8.760e-5 Identity = 20/53 (37.74%), Postives = 35/53 (66.04%), Query Frame = 1
Query: 1 ACGAGQQWKMTLELMKRMSREGLNPDVISYNTAITACAGAGQWKQALTLVEQV 159
AC ++W+ +L++ S E ++PD+ +N AI+AC G WK ALTL++++
Sbjct: 341 ACARSRRWQRSLQIFWE-SAETISPDLAYFNAAISACERGGDWKGALTLLQEL 392 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig31729.8546.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 10
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig31729.8546.1 >prot_H-paniculata_contig31729.8546.1 ID=prot_H-paniculata_contig31729.8546.1|Name=mRNA_H-paniculata_contig31729.8546.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=47bp MTLELMKRMSREGLNPDVISYNTAITACAGAGQWKQALTLVEQVIF*back to top mRNA from alignment at H-paniculata_contig31729:2263..2430- Legend: UTRCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig31729.8546.1 ID=mRNA_H-paniculata_contig31729.8546.1|Name=mRNA_H-paniculata_contig31729.8546.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=168bp|location=Sequence derived from alignment at H-paniculata_contig31729:2263..2430- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig31729:2263..2430- >mRNA_H-paniculata_contig31729.8546.1 ID=mRNA_H-paniculata_contig31729.8546.1|Name=mRNA_H-paniculata_contig31729.8546.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=282bp|location=Sequence derived from alignment at H-paniculata_contig31729:2263..2430- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |