mRNA_H-paniculata_contig28986.7896.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig28986.7896.1 vs. uniprot
Match: A0A438IJY3_VITVI (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Vitis vinifera TaxID=29760 RepID=A0A438IJY3_VITVI) HSP 1 Score: 85.9 bits (211), Expect = 8.970e-17 Identity = 60/171 (35.09%), Postives = 91/171 (53.22%), Query Frame = 1
Query: 1 EPKSAAEVLKSSEAEKWRTAMEEEWGALVENGTWESEDPGRLPARRKAIRTKWIFKRKLKEGGSVARYKAPLVAQGFSQVEG--------EISLK---------------------SGETNLLVAVYVEDLVIAGRREKV-DEFKHKIIPRFRMKDLGFLSRVLGIEVRRD 423
+P S ++V +SS++EKW AM++E ++ +NG W+ + LP K I KWIFK K G++ RYKA LVA+GF+Q EG +S K SG +++ +YV+D+++A + E K + +F MKDLG S VLGI++ RD
Sbjct: 747 DPISVSQVKQSSDSEKWIEAMKDEMKSMKDNGVWDLVE---LPKGVKLIGCKWIFKIKRDSKGNIVRYKAHLVAKGFTQKEGIDYKETFSPVSSKDSFRIIMALENTVDQCIYLKFSGTKFIILVLYVDDILLASSDVGLLHETKRFLSSKFDMKDLGNASFVLGIQIHRD 914
BLAST of mRNA_H-paniculata_contig28986.7896.1 vs. uniprot
Match: A0A182GDL1_AEDAL (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Aedes albopictus TaxID=7160 RepID=A0A182GDL1_AEDAL) HSP 1 Score: 83.6 bits (205), Expect = 1.410e-16 Identity = 43/82 (52.44%), Postives = 59/82 (71.95%), Query Frame = 1
Query: 1 EPKSAAEVLKSSEAEKWRTAMEEEWGALVENGTWESEDPGRLPARRKAIRTKWIFKRKLKEGGSVARYKAPLVAQGFSQVEG 246
EP S E ++SSE++ W+ AM+EE+ +L+ENGTW + LPA RKAI +KW+FK+K G+V ++KA LVAQGFSQ G
Sbjct: 8 EPSSYEEAVRSSESDLWKAAMQEEYDSLMENGTWVLAE---LPAGRKAIGSKWVFKKKEDSAGNVCKFKARLVAQGFSQQFG 86
BLAST of mRNA_H-paniculata_contig28986.7896.1 vs. uniprot
Match: UPI0015A81C6A (uncharacterized mitochondrial protein AtMg00820-like n=1 Tax=Stegodyphus dumicola TaxID=202533 RepID=UPI0015A81C6A) HSP 1 Score: 78.2 bits (191), Expect = 1.340e-15 Identity = 42/82 (51.22%), Postives = 54/82 (65.85%), Query Frame = 1
Query: 1 EPKSAAEVLKSSEAEKWRTAMEEEWGALVENGTWESEDPGRLPARRKAIRTKWIFKRKLKEGGSVARYKAPLVAQGFSQVEG 246
+P++ E L S +AEKW+ AMEEE L N TW D P RK ++ KW+FKRKL + G V RYKA LVA+G++QVEG
Sbjct: 30 DPETLEEALTSPDAEKWKLAMEEELENLKRNETW---DIVPRPEGRKVVKCKWVFKRKLNKDGQVERYKARLVARGYTQVEG 108
BLAST of mRNA_H-paniculata_contig28986.7896.1 vs. uniprot
Match: A0A182GIT5_AEDAL (Reverse transcriptase Ty1/copia-type domain-containing protein n=2 Tax=Aedes albopictus TaxID=7160 RepID=A0A182GIT5_AEDAL) HSP 1 Score: 81.3 bits (199), Expect = 3.270e-15 Identity = 43/74 (58.11%), Postives = 52/74 (70.27%), Query Frame = 1
Query: 25 LKSSEAEKWRTAMEEEWGALVENGTWESEDPGRLPARRKAIRTKWIFKRKLKEGGSVARYKAPLVAQGFSQVEG 246
+K EAE W+ AM++E +L ENGTW+ D LP RKA+ KWIFKRKL E G+V RYKA LVAQGF+Q G
Sbjct: 1 MKGPEAELWKAAMDDEMTSLRENGTWQLTD---LPPGRKAVGCKWIFKRKLDEDGNVVRYKARLVAQGFTQKFG 71
BLAST of mRNA_H-paniculata_contig28986.7896.1 vs. uniprot
Match: A0A1W7R6D9_AEDAL (Putative polyprotein (Fragment) n=1 Tax=Aedes albopictus TaxID=7160 RepID=A0A1W7R6D9_AEDAL) HSP 1 Score: 80.9 bits (198), Expect = 4.840e-15 Identity = 44/82 (53.66%), Postives = 55/82 (67.07%), Query Frame = 1
Query: 1 EPKSAAEVLKSSEAEKWRTAMEEEWGALVENGTWESEDPGRLPARRKAIRTKWIFKRKLKEGGSVARYKAPLVAQGFSQVEG 246
EPKS AE L S E++KW+ AM EE +L+E TW D +LPA RKAI ++W++KRK G V R+KA LVAQGF Q G
Sbjct: 643 EPKSYAEALASPESDKWKAAMAEEMASLMEKDTW---DVVQLPADRKAIGSRWVYKRKESANGDVVRFKARLVAQGFRQKFG 721
BLAST of mRNA_H-paniculata_contig28986.7896.1 vs. uniprot
Match: A0A1Y1IGG8_KLENI (Integrase catalytic domain-containing protein n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1IGG8_KLENI) HSP 1 Score: 79.7 bits (195), Expect = 1.260e-14 Identity = 51/112 (45.54%), Postives = 61/112 (54.46%), Query Frame = 1
Query: 1 EPKSAAEVLKSSEAEKWRTAMEEEWGALVENGTWESEDPGRLPARRKAIRTKWIFKRKLKEGGSVARYKAPLVAQGFSQVEG--------EISLKSGETNLLVAVYVEDLVI 312
EPKS E L S EAE WR AM+EE+G+L EN TWE +P P+ K I KW FK K E G + RYKA LV +GF Q +G +S LL VEDL +
Sbjct: 560 EPKSLGEALNSPEAELWRKAMDEEFGSLQENQTWELAEP---PSGVKPIPCKWAFKLKRDENGQINRYKARLVIKGFRQKKGVDFEEVFAPVSRHVTLRTLLAVAAVEDLEV 668
BLAST of mRNA_H-paniculata_contig28986.7896.1 vs. uniprot
Match: UPI0011563080 (uncharacterized protein LOC115269925 n=1 Tax=Aedes albopictus TaxID=7160 RepID=UPI0011563080) HSP 1 Score: 74.7 bits (182), Expect = 1.390e-14 Identity = 44/82 (53.66%), Postives = 53/82 (64.63%), Query Frame = 1
Query: 1 EPKSAAEVLKSSEAEKWRTAMEEEWGALVENGTWESEDPGRLPARRKAIRTKWIFKRKLKEGGSVARYKAPLVAQGFSQVEG 246
EPK+ E + SE+ KWR AM EE + E+GTW+ + LP RKAI KW++KRK E G VARYKA L AQGFSQ G
Sbjct: 33 EPKTFDEAV--SESAKWRNAMHEEMASHREHGTWDITE---LPPGRKAIGCKWVYKRKQDETGQVARYKARLAAQGFSQKFG 109
BLAST of mRNA_H-paniculata_contig28986.7896.1 vs. uniprot
Match: A0A1U8MDR4_GOSHI (uncharacterized protein LOC107936685 n=1 Tax=Gossypium hirsutum TaxID=3635 RepID=A0A1U8MDR4_GOSHI) HSP 1 Score: 79.3 bits (194), Expect = 1.540e-14 Identity = 56/156 (35.90%), Postives = 80/156 (51.28%), Query Frame = 1
Query: 4 PKSAAEVLKSSEAEKWRTAMEEEWGALVENGTWESEDPGRLPARRKAIRTKWIFKRKLKEGGSVARYKAPLVAQGFSQ------------VEGEISLK------SGETNLLVAVYVEDLVIAGRREK-VDEFKHKIIPRFRMKDLGFLSRVLGIEV 414
P S E +SS W + E+ AL+ N TW D LPA R+A+ KWIFK K GSVARYK LV +G+ Q + G++ + G L V VY++D+++ G + +D+F ++ +F +KDL LS LGIEV
Sbjct: 284 PTSITEAFQSSG---WTATAQTEYNALLSNHTW---DLMPLPAGRRAVECKWIFKIKRNVDGSVARYKGRLVVKGYLQESLRQVDINNAFLNGDLHKEIYMVQPPGSQLLYVLVYIDDIIVTGTDSRAIDQFIKELDVQFSLKDLRKLSYFLGIEV 433
BLAST of mRNA_H-paniculata_contig28986.7896.1 vs. uniprot
Match: A0A1X7S0N6_ZYMTR (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Zymoseptoria tritici ST99CH_3D7 TaxID=1276538 RepID=A0A1X7S0N6_ZYMTR) HSP 1 Score: 75.9 bits (185), Expect = 3.360e-14 Identity = 38/82 (46.34%), Postives = 53/82 (64.63%), Query Frame = 1
Query: 1 EPKSAAEVLKSSEAEKWRTAMEEEWGALVENGTWESEDPGRLPARRKAIRTKWIFKRKLKEGGSVARYKAPLVAQGFSQVEG 246
EPKS +V K+ +W TAM +E+ +L+EN TWE D LPA ++A+ KW+FK K + G+V R+KA V +GF Q EG
Sbjct: 33 EPKSYKDVEKNQYEAEWVTAMTDEYSSLIENATWEIVDEASLPAHKRALSGKWVFKVKRDDKGNVHRFKARWVVRGFEQEEG 114
BLAST of mRNA_H-paniculata_contig28986.7896.1 vs. uniprot
Match: UPI0010A455F4 (uncharacterized protein LOC114763092 n=1 Tax=Prosopis alba TaxID=207710 RepID=UPI0010A455F4) HSP 1 Score: 75.1 bits (183), Expect = 4.130e-14 Identity = 47/119 (39.50%), Postives = 67/119 (56.30%), Query Frame = 1
Query: 61 MEEEWGALVENGTWESEDPGRLPARRKAIRTKWIFKRKLKEGGSVARYKAPLVAQGFSQVEGEISLKSGETNLLVAVYVEDLVIAGRRE-KVDEFKHKIIPRFRMKDLGFLSRVLGIEV 414
M+EE AL NGTW ++ LP ++AI +KW++KRK K G++ R KA LVA+G + T + +YV+D++I E K+ E K + F +KDLG L LGIEV
Sbjct: 1 MKEEIEALERNGTWTLKE---LPKGKRAIDSKWVYKRKFKPNGTLERNKARLVAKGMQK-----------TFAAILIYVDDIIITRNDEGKIAEIKKHLHKNFSIKDLGPLKYFLGIEV 105 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig28986.7896.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig28986.7896.1 >prot_H-paniculata_contig28986.7896.1 ID=prot_H-paniculata_contig28986.7896.1|Name=mRNA_H-paniculata_contig28986.7896.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=141bp EPKSAAEVLKSSEAEKWRTAMEEEWGALVENGTWESEDPGRLPARRKAIRback to top mRNA from alignment at H-paniculata_contig28986:1625..2363- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig28986.7896.1 ID=mRNA_H-paniculata_contig28986.7896.1|Name=mRNA_H-paniculata_contig28986.7896.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=739bp|location=Sequence derived from alignment at H-paniculata_contig28986:1625..2363- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig28986:1625..2363- >mRNA_H-paniculata_contig28986.7896.1 ID=mRNA_H-paniculata_contig28986.7896.1|Name=mRNA_H-paniculata_contig28986.7896.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=846bp|location=Sequence derived from alignment at H-paniculata_contig28986:1625..2363- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |