prot_H-paniculata_contig28569.7782.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig28569.7782.1
Unique Nameprot_H-paniculata_contig28569.7782.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length271
Homology
BLAST of mRNA_H-paniculata_contig28569.7782.1 vs. uniprot
Match: A0A6H5JNN2_9PHAE (DNA-directed RNA polymerase subunit beta n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNN2_9PHAE)

HSP 1 Score: 511 bits (1315), Expect = 9.870e-177
Identity = 257/270 (95.19%), Postives = 263/270 (97.41%), Query Frame = 0
Query:    1 KGVVEYIDTEEEETTMIAMEPKDLEEAGGYSSTYTHCEIHPSMILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYASNYQLRMDTLAHVLHYPMKPLVTTRAMEHLHFRELPSGVNVIVGIMVYSGYNQEDSLIMNQSAIDRGLFRSSFFRTLSDQEKASAGRGMGDMAVLSAESFERPARENTAGMKHGNYDKLEDDGLVAPGTRVSGTDVLIGKTTPLGGG-GGVMGGPGHRSKKDSSTVMRSHEDGIVDRVMLTTNQEGFKFCKV 269
            +GVVEYIDTEEEETTM+AMEPKDLEE+GGYSSTYTHCEIHPSMILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYASNYQLRMDTLAHVLHYP KPLVTTRAMEHLHFRELPSG NVIVGIMVYSGYNQEDSLIMNQSA+DRGLFRSSFFRTL+DQEKA  GRGMGDMAVLSAESFERPARENTAGMKHGNYDKLE+DGLVAPGTRVSGTDVLIGKTTPLGGG  GV GGPGHRSKKDSSTVMRSHEDGIVDRVMLTTNQEGFKFCKV
Sbjct:  128 QGVVEYIDTEEEETTMVAMEPKDLEESGGYSSTYTHCEIHPSMILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYASNYQLRMDTLAHVLHYPEKPLVTTRAMEHLHFRELPSGFNVIVGIMVYSGYNQEDSLIMNQSAVDRGLFRSSFFRTLNDQEKA--GRGMGDMAVLSAESFERPARENTAGMKHGNYDKLEEDGLVAPGTRVSGTDVLIGKTTPLGGGVSGVTGGPGHRSKKDSSTVMRSHEDGIVDRVMLTTNQEGFKFCKV 395          
BLAST of mRNA_H-paniculata_contig28569.7782.1 vs. uniprot
Match: D7FHZ3_ECTSI (DNA-directed RNA polymerase subunit beta n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHZ3_ECTSI)

HSP 1 Score: 511 bits (1315), Expect = 1.940e-169
Identity = 257/270 (95.19%), Postives = 263/270 (97.41%), Query Frame = 0
Query:    1 KGVVEYIDTEEEETTMIAMEPKDLEEAGGYSSTYTHCEIHPSMILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYASNYQLRMDTLAHVLHYPMKPLVTTRAMEHLHFRELPSGVNVIVGIMVYSGYNQEDSLIMNQSAIDRGLFRSSFFRTLSDQEKASAGRGMGDMAVLSAESFERPARENTAGMKHGNYDKLEDDGLVAPGTRVSGTDVLIGKTTPLGGG-GGVMGGPGHRSKKDSSTVMRSHEDGIVDRVMLTTNQEGFKFCKV 269
            +GVVEYIDTEEEETTM+AMEPKDLEE+GGYSSTYTHCEIHPSMILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYASNYQLRMDTLAHVLHYP KPLVTTRAMEHLHFRELPSG NVIVGIMVYSGYNQEDSLIMNQSA+DRGLFRSSFFRTL+DQEKA  GRGMGDMAVLSAESFERPARENTAGMKHGNYDKLE+DGLVAPGTRVSGTDVLIGKTTPLGGG  GV GGPGHRSKKDSSTVMRSHEDGIVDRVMLTTNQEGFKFCKV
Sbjct:  748 QGVVEYIDTEEEETTMVAMEPKDLEESGGYSSTYTHCEIHPSMILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYASNYQLRMDTLAHVLHYPEKPLVTTRAMEHLHFRELPSGFNVIVGIMVYSGYNQEDSLIMNQSAVDRGLFRSSFFRTLNDQEKA--GRGMGDMAVLSAESFERPARENTAGMKHGNYDKLEEDGLVAPGTRVSGTDVLIGKTTPLGGGVAGVTGGPGHRSKKDSSTVMRSHEDGIVDRVMLTTNQEGFKFCKV 1015          
BLAST of mRNA_H-paniculata_contig28569.7782.1 vs. uniprot
Match: A0A835YQ41_9STRA (DNA-directed RNA polymerase subunit beta n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YQ41_9STRA)

HSP 1 Score: 428 bits (1100), Expect = 1.760e-138
Identity = 208/270 (77.04%), Postives = 240/270 (88.89%), Query Frame = 0
Query:    2 GVVEYIDTEEEETTMIAMEPKDLEEAGGYSSTYTHCEIHPSMILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYASNYQLRMDTLAHVLHYPMKPLVTTRAMEHLHFRELPSGVNVIVGIMVYSGYNQEDSLIMNQSAIDRGLFRSSFFRTLSDQEKASAGRGMGDMAVLSAESFERPARENTAGMKHGNYDKLEDDGLVAPGTRVSGTDVLIGKTTPL--GGGGGVMGGPGHRSKKDSSTVMRSHEDGIVDRVMLTTNQEGFKFCKV 269
            GVVEY+DTEEEETTMIAM+P DL   GGYS+TYTHCEIHPSMILG+CASIIPFPDHNQSPRNTYQSAMGKQAMG+YASNYQ+RMDTLAHVLHYPMKPLV TR+MEHLHFRELPSGVNV+V IM Y+GYNQEDSLIMNQSAIDRGLFRSS+FR++ D+EKA  G G+G+MA+LSAE FERP ++  +G + G+YDKL+ DGLV+PGTRVSG+D++IGKTTPL  GG GG+  G    SK+DSST M++HE G +D+VMLTTNQEGFKFCKV
Sbjct:  662 GVVEYVDTEEEETTMIAMDPSDLAAGGGYSTTYTHCEIHPSMILGICASIIPFPDHNQSPRNTYQSAMGKQAMGVYASNYQVRMDTLAHVLHYPMKPLVCTRSMEHLHFRELPSGVNVVVAIMCYTGYNQEDSLIMNQSAIDRGLFRSSYFRSIVDKEKA--GSGVGEMALLSAEQFERPNKDQCSGSRSGSYDKLDADGLVSPGTRVSGSDIIIGKTTPLAQGGAGGLTAGVNRFSKRDSSTAMKAHESGTIDQVMLTTNQEGFKFCKV 929          
BLAST of mRNA_H-paniculata_contig28569.7782.1 vs. uniprot
Match: A0A7S4QFE0_9STRA (DNA-directed RNA polymerase n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4QFE0_9STRA)

HSP 1 Score: 397 bits (1019), Expect = 4.660e-129
Identity = 196/269 (72.86%), Postives = 229/269 (85.13%), Query Frame = 0
Query:    1 KGVVEYIDTEEEETTMIAMEPKDLEEAGGYSSTYTHCEIHPSMILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYASNYQLRMDTLAHVLHYPMKPLVTTRAMEHLHFRELPSGVNVIVGIMVYSGYNQEDSLIMNQSAIDRGLFRSSFFRTLSDQEKASAGRGMGDMAVLSAESFERPARENTAGMKHGNYDKLEDDGLVAPGTRVSGTDVLIGKTTPLGGGGGVMGGPGHRSKKDSSTVMRSHEDGIVDRVMLTTNQEGFKFCKV 269
            +G+VEYIDTEEEETTMIAMEPKDLE    YSSTYTHCEIHPSMILG+CASIIPFPDHNQSPRNTYQSAMGKQAMGIY+SNYQ+RMDT+AHVLHYP KPL TTRAME LHFRELPSGVN +V IMVY+GYNQEDSLIMNQSAIDRGLFRSS++R  +DQEKAS+   +G +  L++E+FE+P  ++  GMKHG Y KL+DDGLV PG RVSG D+LIGKT PL G  G+  GP   +K+D ST M+++E+GIVD VM++T +EG+KF KV
Sbjct:  627 EGLVEYIDTEEEETTMIAMEPKDLESGDSYSSTYTHCEIHPSMILGICASIIPFPDHNQSPRNTYQSAMGKQAMGIYSSNYQVRMDTMAHVLHYPQKPLCTTRAMEFLHFRELPSGVNCVVAIMVYTGYNQEDSLIMNQSAIDRGLFRSSYYRCYTDQEKASS---VGSIGSLTSETFEKPHMDSCRGMKHGEYGKLDDDGLVQPGARVSGDDILIGKTAPLDGTAGM--GPSRYTKRDCSTSMKANENGIVDNVMVSTTKEGYKFTKV 890          
BLAST of mRNA_H-paniculata_contig28569.7782.1 vs. uniprot
Match: A0A6U0RQ91_9STRA (DNA-directed RNA polymerase subunit beta n=2 Tax=Biddulphiophycidae TaxID=33837 RepID=A0A6U0RQ91_9STRA)

HSP 1 Score: 386 bits (991), Expect = 1.010e-127
Identity = 189/269 (70.26%), Postives = 226/269 (84.01%), Query Frame = 0
Query:    1 KGVVEYIDTEEEETTMIAMEPKDLEEAGGYSSTYTHCEIHPSMILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYASNYQLRMDTLAHVLHYPMKPLVTTRAMEHLHFRELPSGVNVIVGIMVYSGYNQEDSLIMNQSAIDRGLFRSSFFRTLSDQEKASAGRGMGDMAVLSAESFERPARENTAGMKHGNYDKLEDDGLVAPGTRVSGTDVLIGKTTPLGGGGGVMGGPGHRSKKDSSTVMRSHEDGIVDRVMLTTNQEGFKFCKV 269
            +G+VEY+DTEEEETTMIAMEP DL+    YSSTYTHCEIHPSMILG+CASIIPFPDHNQSPRNTYQSAMGKQAMGIYASNYQ+RMDT+AHVLHYP KPL TTRAME LHFRELPSGVN +V IM+Y+GYNQEDSLI+NQSAIDRGLFRSS+FR  SDQEKAS+   +G +  L++E+FE+P+ +N  GMKHG+Y KL++DGL+  GTRVSG D+LIGKT P+    G+   P   +K+D ST M+S E GIVD V+++T +EG++F KV
Sbjct:  133 EGIVEYVDTEEEETTMIAMEPSDLDADESYSSTYTHCEIHPSMILGICASIIPFPDHNQSPRNTYQSAMGKQAMGIYASNYQVRMDTMAHVLHYPQKPLCTTRAMEFLHFRELPSGVNCVVAIMIYTGYNQEDSLILNQSAIDRGLFRSSYFRCYSDQEKASS---VGTIGSLTSETFEKPSFDNCRGMKHGDYGKLDEDGLIQSGTRVSGDDILIGKTAPMDSTAGM---PSKFTKRDCSTAMKSTESGIVDNVLISTTKEGYRFTKV 395          
BLAST of mRNA_H-paniculata_contig28569.7782.1 vs. uniprot
Match: A0A1Z5JUL8_FISSO (DNA-directed RNA polymerase subunit beta n=3 Tax=Naviculales TaxID=38748 RepID=A0A1Z5JUL8_FISSO)

HSP 1 Score: 397 bits (1020), Expect = 2.190e-127
Identity = 197/269 (73.23%), Postives = 229/269 (85.13%), Query Frame = 0
Query:    1 KGVVEYIDTEEEETTMIAMEPKDLEEAGGYSSTYTHCEIHPSMILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYASNYQLRMDTLAHVLHYPMKPLVTTRAMEHLHFRELPSGVNVIVGIMVYSGYNQEDSLIMNQSAIDRGLFRSSFFRTLSDQEKASAGRGMGDMAVLSAESFERPARENTAGMKHGNYDKLEDDGLVAPGTRVSGTDVLIGKTTPLGGGGGVMGGPGHRSKKDSSTVMRSHEDGIVDRVMLTTNQEGFKFCKV 269
            +G+VEYIDTEEEETTMIAMEPKDL+    YSSTYTHCEIHPSMILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYASNYQ+RMDT+AHVLHYP KPL TTRAME LHFRELPSGVN +V IM+Y+GYNQEDSLIMNQSAIDRGLFRSS++R   DQEKAS+   +G +  L++E FE+PA +NT GMKHG Y KL+DDGLVAPGTRVSG DVLIGKT P+    G+   P   +K+D ST M+++E+GIVD V+++T +EG++F KV
Sbjct:  592 EGLVEYIDTEEEETTMIAMEPKDLDATDAYSSTYTHCEIHPSMILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYASNYQVRMDTMAHVLHYPQKPLCTTRAMEFLHFRELPSGVNCVVAIMIYTGYNQEDSLIMNQSAIDRGLFRSSYYRCYIDQEKASS---VGTIGSLTSELFEKPAMDNTRGMKHGEYGKLDDDGLVAPGTRVSGDDVLIGKTAPMDSTSGM---PSRYTKRDCSTSMKANENGIVDNVLISTTKEGYRFTKV 854          
BLAST of mRNA_H-paniculata_contig28569.7782.1 vs. uniprot
Match: A0A7S1FRA3_9STRA (DNA-directed RNA polymerase subunit beta n=2 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1FRA3_9STRA)

HSP 1 Score: 391 bits (1004), Expect = 4.820e-124
Identity = 199/271 (73.43%), Postives = 227/271 (83.76%), Query Frame = 0
Query:    2 GVVEYIDTEEEETTMIAMEPKDLEEA---GGYSSTYTHCEIHPSMILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYASNYQLRMDTLAHVLHYPMKPLVTTRAMEHLHFRELPSGVNVIVGIMVYSGYNQEDSLIMNQSAIDRGLFRSSFFRTLSDQEKASAGRGMGDMAVLSAESFERPARENTAGMKHGNYDKLEDDGLVAPGTRVSGTDVLIGKTTPLGGGGGVMGGPGHRSKKDSSTVMRSHEDGIVDRVMLTTNQEGFKFCKV 269
            G+VEYIDTEEEETTMIAMEPKDLEE+   GGYSSTYTHCEIHP+MILG+CASIIPFPDHNQSPRNTYQSAMGKQAMGIYASNYQ+RMDT+AHVLHYP KPL TTRAME LHFRELPSGVN IVGIM+Y+GYNQEDSLI+NQSAIDRGLFRSS+FR  SDQEK     G G    L++E+FERP  +N  GMKHG Y KL++DGLV PG+RVSG D+LIGKT PL     VM  P   +K+D ST M+S ++GIVD VM++T +EG++F KV
Sbjct:  719 GIVEYIDTEEEETTMIAMEPKDLEESRRGGGYSSTYTHCEIHPAMILGICASIIPFPDHNQSPRNTYQSAMGKQAMGIYASNYQVRMDTMAHVLHYPQKPLCTTRAMEFLHFRELPSGVNCIVGIMIYTGYNQEDSLILNQSAIDRGLFRSSYFRCYSDQEK-----GSGASNPLNSETFERPLHDNCRGMKHGEYGKLDEDGLVQPGSRVSGEDILIGKTAPLETN-SVM--PSRYTKRDCSTPMKSTDNGIVDNVMISTTKEGYRFTKV 981          
BLAST of mRNA_H-paniculata_contig28569.7782.1 vs. uniprot
Match: A0A1E7ERG7_9STRA (DNA-directed RNA polymerase subunit beta n=6 Tax=Bacillariophyta TaxID=2836 RepID=A0A1E7ERG7_9STRA)

HSP 1 Score: 387 bits (995), Expect = 4.290e-123
Identity = 191/269 (71.00%), Postives = 226/269 (84.01%), Query Frame = 0
Query:    1 KGVVEYIDTEEEETTMIAMEPKDLEEAGGYSSTYTHCEIHPSMILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYASNYQLRMDTLAHVLHYPMKPLVTTRAMEHLHFRELPSGVNVIVGIMVYSGYNQEDSLIMNQSAIDRGLFRSSFFRTLSDQEKASAGRGMGDMAVLSAESFERPARENTAGMKHGNYDKLEDDGLVAPGTRVSGTDVLIGKTTPLGGGGGVMGGPGHRSKKDSSTVMRSHEDGIVDRVMLTTNQEGFKFCKV 269
            +G+VEYIDTEEEETTM+AM+P DL     YSSTYTHCEIHPSMILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYASNYQ+RMDT+AHVLHYP KPL TTRAME LHFRELPSGVN IVGI+VY+GYNQEDSLIMNQSAIDRGLFRSS++R   DQEKAS+   +G +  L++E FE+P ++ T GMKHG Y KL++DGLVAPGTRVSG D+LIGKT P+     +   P   +K+D ST M+++E+GIVD V+++T +EG++F KV
Sbjct:  668 EGIVEYIDTEEEETTMVAMDPVDLNADESYSSTYTHCEIHPSMILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYASNYQVRMDTMAHVLHYPQKPLCTTRAMEFLHFRELPSGVNCIVGILVYTGYNQEDSLIMNQSAIDRGLFRSSYYRCYIDQEKASS---VGTLGTLNSEIFEKPTQDKTRGMKHGEYGKLDEDGLVAPGTRVSGDDILIGKTAPMDSSTNM---PSRYTKRDCSTSMKANENGIVDNVLISTTKEGYRFTKV 930          
BLAST of mRNA_H-paniculata_contig28569.7782.1 vs. uniprot
Match: B8C598_THAPS (DNA-directed RNA polymerase subunit beta n=2 Tax=Bacillariophyta TaxID=2836 RepID=B8C598_THAPS)

HSP 1 Score: 387 bits (994), Expect = 6.200e-123
Identity = 192/271 (70.85%), Postives = 230/271 (84.87%), Query Frame = 0
Query:    1 KGVVEYIDTEEEETTMIAMEPKDLEEAGG--YSSTYTHCEIHPSMILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYASNYQLRMDTLAHVLHYPMKPLVTTRAMEHLHFRELPSGVNVIVGIMVYSGYNQEDSLIMNQSAIDRGLFRSSFFRTLSDQEKASAGRGMGDMAVLSAESFERPARENTAGMKHGNYDKLEDDGLVAPGTRVSGTDVLIGKTTPLGGGGGVMGGPGHRSKKDSSTVMRSHEDGIVDRVMLTTNQEGFKFCKV 269
            +G+VEY+DTEEEETTMIAMEPKDL+   G  YS+TYTHCEIHPSMILG+CASIIPFPDHNQSPRNTYQSAMGKQAMGIYASNYQ+RMDT+AHVLHYP KPL TTRAME LHFRELPSGVNV+V IM+Y+GYNQEDSLIMNQSAIDRGLFRSS++R  +DQEK+S+   +G +  L++E FERPA +N  GMK G+Y KL+DDGLV+PGTRVSG DVLIGKT P+     +   P   +K+D ST M+++E+GIVD V+++T +EG++F KV
Sbjct:  668 EGLVEYVDTEEEETTMIAMEPKDLDMTVGEPYSTTYTHCEIHPSMILGICASIIPFPDHNQSPRNTYQSAMGKQAMGIYASNYQVRMDTMAHVLHYPQKPLCTTRAMEFLHFRELPSGVNVVVAIMIYTGYNQEDSLIMNQSAIDRGLFRSSYYRCYNDQEKSSS---VGSVGALNSEFFERPAFDNCKGMKTGDYGKLDDDGLVSPGTRVSGDDVLIGKTAPMD---AIANTPSRYTKRDCSTSMKANENGIVDNVLISTTKEGYRFTKV 932          
BLAST of mRNA_H-paniculata_contig28569.7782.1 vs. uniprot
Match: K0RD88_THAOC (DNA-directed RNA polymerase subunit beta n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0RD88_THAOC)

HSP 1 Score: 388 bits (996), Expect = 1.570e-122
Identity = 193/269 (71.75%), Postives = 229/269 (85.13%), Query Frame = 0
Query:    1 KGVVEYIDTEEEETTMIAMEPKDLEEAGGYSSTYTHCEIHPSMILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYASNYQLRMDTLAHVLHYPMKPLVTTRAMEHLHFRELPSGVNVIVGIMVYSGYNQEDSLIMNQSAIDRGLFRSSFFRTLSDQEKASAGRGMGDMAVLSAESFERPARENTAGMKHGNYDKLEDDGLVAPGTRVSGTDVLIGKTTPLGGGGGVMGGPGHRSKKDSSTVMRSHEDGIVDRVMLTTNQEGFKFCKV 269
            +G+VEY+DTEEEETTMIAMEPKDL E  GYSSTYTHCEIHPSMILGVCASIIPFPDHNQSPRN YQSAMGKQAMGIYASNYQ+RMDT+AHVLHYP KPL TTRAME L FRELPSGVNV+V IM+Y+GYNQEDSLIMNQSAIDRGLFRSS++R  +DQEKA++   +G +  L++E+FE+P  +NT GMK+G+Y+KL++DGLVAPGTRVSG DVLIGKTTP      +   P   +K+D ST M++ E GIVD V+++T +EG++F KV
Sbjct:  739 EGLVEYVDTEEEETTMIAMEPKDLGE--GYSSTYTHCEIHPSMILGVCASIIPFPDHNQSPRNVYQSAMGKQAMGIYASNYQVRMDTMAHVLHYPQKPLCTTRAMEFLKFRELPSGVNVVVAIMIYTGYNQEDSLIMNQSAIDRGLFRSSYYRCYNDQEKAAS---VGSVGALNSETFEKPTMDNTRGMKYGDYNKLDEDGLVAPGTRVSGDDVLIGKTTPTE---ALANAPSRYTKRDCSTSMKATESGIVDNVLISTTKEGYRFTKV 999          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig28569.7782.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JNN2_9PHAE9.870e-17795.19DNA-directed RNA polymerase subunit beta n=1 Tax=E... [more]
D7FHZ3_ECTSI1.940e-16995.19DNA-directed RNA polymerase subunit beta n=1 Tax=E... [more]
A0A835YQ41_9STRA1.760e-13877.04DNA-directed RNA polymerase subunit beta n=1 Tax=T... [more]
A0A7S4QFE0_9STRA4.660e-12972.86DNA-directed RNA polymerase n=1 Tax=Ditylum bright... [more]
A0A6U0RQ91_9STRA1.010e-12770.26DNA-directed RNA polymerase subunit beta n=2 Tax=B... [more]
A0A1Z5JUL8_FISSO2.190e-12773.23DNA-directed RNA polymerase subunit beta n=3 Tax=N... [more]
A0A7S1FRA3_9STRA4.820e-12473.43DNA-directed RNA polymerase subunit beta n=2 Tax=C... [more]
A0A1E7ERG7_9STRA4.290e-12371.00DNA-directed RNA polymerase subunit beta n=6 Tax=B... [more]
B8C598_THAPS6.200e-12370.85DNA-directed RNA polymerase subunit beta n=2 Tax=B... [more]
K0RD88_THAOC1.570e-12271.75DNA-directed RNA polymerase subunit beta n=1 Tax=T... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR014724RNA polymerase Rpb2, OB-foldGENE3D2.40.50.150coord: 175..271
e-value: 7.2E-7
score: 31.5
IPR037033DNA-directed RNA polymerase, subunit 2, hybrid-binding domain superfamilyGENE3D2.40.270.10coord: 47..174
e-value: 2.0E-38
score: 134.1
IPR007120DNA-directed RNA polymerase, subunit 2, hybrid-binding domainPFAMPF00562RNA_pol_Rpb2_6coord: 48..268
e-value: 1.3E-44
score: 152.9
IPR007647RNA polymerase Rpb2, domain 5PFAMPF04567RNA_pol_Rpb2_5coord: 1..41
e-value: 1.4E-16
score: 60.8
NoneNo IPR availablePANTHERPTHR20856:SF7DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB2coord: 1..270
NoneNo IPR availableSUPERFAMILY64484beta and beta-prime subunits of DNA dependent RNA-polymerasecoord: 2..270
IPR015712DNA-directed RNA polymerase, subunit 2PANTHERPTHR20856DNA-DIRECTED RNA POLYMERASE I SUBUNIT 2coord: 1..270

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig28569contigH-paniculata_contig28569:444..2505 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig28569.7782.1mRNA_H-paniculata_contig28569.7782.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig28569 444..2505 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig28569.7782.1 ID=prot_H-paniculata_contig28569.7782.1|Name=mRNA_H-paniculata_contig28569.7782.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=271bp
KGVVEYIDTEEEETTMIAMEPKDLEEAGGYSSTYTHCEIHPSMILGVCAS
IIPFPDHNQSPRNTYQSAMGKQAMGIYASNYQLRMDTLAHVLHYPMKPLV
TTRAMEHLHFRELPSGVNVIVGIMVYSGYNQEDSLIMNQSAIDRGLFRSS
FFRTLSDQEKASAGRGMGDMAVLSAESFERPARENTAGMKHGNYDKLEDD
GLVAPGTRVSGTDVLIGKTTPLGGGGGVMGGPGHRSKKDSSTVMRSHEDG
IVDRVMLTTNQEGFKFCKVCV
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR014724RNA_pol_RPB2_OB-fold
IPR037033DNA-dir_RNAP_su2_hyb_sf
IPR007120DNA-dir_RNAP_su2_dom
IPR007647RNA_pol_Rpb2_5
IPR015712DNA-dir_RNA_pol_su2