mRNA_H-paniculata_contig28569.7782.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig28569.7782.1
Unique NamemRNA_H-paniculata_contig28569.7782.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig28569.7782.1 vs. uniprot
Match: A0A6H5JNN2_9PHAE (DNA-directed RNA polymerase subunit beta n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNN2_9PHAE)

HSP 1 Score: 511 bits (1315), Expect = 9.870e-177
Identity = 257/270 (95.19%), Postives = 263/270 (97.41%), Query Frame = 1 
Query:    1 KGVVEYIDTEEEETTMIAMEPKDLEEAGGYSSTYTHCEIHPSMILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYASNYQLRMDTLAHVLHYPMKPLVTTRAMEHLHFRELPSGVNVIVGIMVYSGYNQEDSLIMNQSAIDRGLFRSSFFRTLSDQEKASAGRGMGDMAVLSAESFERPARENTAGMKHGNYDKLEDDGLVAPGTRVSGTDVLIGKTTPLGGG-GGVMGGPGHRSKKDSSTVMRSHEDGIVDRVMLTTNQEGFKFCKV 807
            +GVVEYIDTEEEETTM+AMEPKDLEE+GGYSSTYTHCEIHPSMILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYASNYQLRMDTLAHVLHYP KPLVTTRAMEHLHFRELPSG NVIVGIMVYSGYNQEDSLIMNQSA+DRGLFRSSFFRTL+DQEKA  GRGMGDMAVLSAESFERPARENTAGMKHGNYDKLE+DGLVAPGTRVSGTDVLIGKTTPLGGG  GV GGPGHRSKKDSSTVMRSHEDGIVDRVMLTTNQEGFKFCKV
Sbjct:  128 QGVVEYIDTEEEETTMVAMEPKDLEESGGYSSTYTHCEIHPSMILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYASNYQLRMDTLAHVLHYPEKPLVTTRAMEHLHFRELPSGFNVIVGIMVYSGYNQEDSLIMNQSAVDRGLFRSSFFRTLNDQEKA--GRGMGDMAVLSAESFERPARENTAGMKHGNYDKLEEDGLVAPGTRVSGTDVLIGKTTPLGGGVSGVTGGPGHRSKKDSSTVMRSHEDGIVDRVMLTTNQEGFKFCKV 395
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BLAST of mRNA_H-paniculata_contig28569.7782.1 vs. uniprot
Match: D7FHZ3_ECTSI (DNA-directed RNA polymerase subunit beta n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHZ3_ECTSI)

HSP 1 Score: 511 bits (1315), Expect = 1.940e-169
Identity = 257/270 (95.19%), Postives = 263/270 (97.41%), Query Frame = 1 
Query:    1 KGVVEYIDTEEEETTMIAMEPKDLEEAGGYSSTYTHCEIHPSMILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYASNYQLRMDTLAHVLHYPMKPLVTTRAMEHLHFRELPSGVNVIVGIMVYSGYNQEDSLIMNQSAIDRGLFRSSFFRTLSDQEKASAGRGMGDMAVLSAESFERPARENTAGMKHGNYDKLEDDGLVAPGTRVSGTDVLIGKTTPLGGG-GGVMGGPGHRSKKDSSTVMRSHEDGIVDRVMLTTNQEGFKFCKV 807
            +GVVEYIDTEEEETTM+AMEPKDLEE+GGYSSTYTHCEIHPSMILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYASNYQLRMDTLAHVLHYP KPLVTTRAMEHLHFRELPSG NVIVGIMVYSGYNQEDSLIMNQSA+DRGLFRSSFFRTL+DQEKA  GRGMGDMAVLSAESFERPARENTAGMKHGNYDKLE+DGLVAPGTRVSGTDVLIGKTTPLGGG  GV GGPGHRSKKDSSTVMRSHEDGIVDRVMLTTNQEGFKFCKV
Sbjct:  748 QGVVEYIDTEEEETTMVAMEPKDLEESGGYSSTYTHCEIHPSMILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYASNYQLRMDTLAHVLHYPEKPLVTTRAMEHLHFRELPSGFNVIVGIMVYSGYNQEDSLIMNQSAVDRGLFRSSFFRTLNDQEKA--GRGMGDMAVLSAESFERPARENTAGMKHGNYDKLEEDGLVAPGTRVSGTDVLIGKTTPLGGGVAGVTGGPGHRSKKDSSTVMRSHEDGIVDRVMLTTNQEGFKFCKV 1015
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BLAST of mRNA_H-paniculata_contig28569.7782.1 vs. uniprot
Match: A0A835YQ41_9STRA (DNA-directed RNA polymerase subunit beta n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YQ41_9STRA)

HSP 1 Score: 428 bits (1100), Expect = 1.760e-138
Identity = 208/270 (77.04%), Postives = 240/270 (88.89%), Query Frame = 1 
Query:    4 GVVEYIDTEEEETTMIAMEPKDLEEAGGYSSTYTHCEIHPSMILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYASNYQLRMDTLAHVLHYPMKPLVTTRAMEHLHFRELPSGVNVIVGIMVYSGYNQEDSLIMNQSAIDRGLFRSSFFRTLSDQEKASAGRGMGDMAVLSAESFERPARENTAGMKHGNYDKLEDDGLVAPGTRVSGTDVLIGKTTPL--GGGGGVMGGPGHRSKKDSSTVMRSHEDGIVDRVMLTTNQEGFKFCKV 807
            GVVEY+DTEEEETTMIAM+P DL   GGYS+TYTHCEIHPSMILG+CASIIPFPDHNQSPRNTYQSAMGKQAMG+YASNYQ+RMDTLAHVLHYPMKPLV TR+MEHLHFRELPSGVNV+V IM Y+GYNQEDSLIMNQSAIDRGLFRSS+FR++ D+EKA  G G+G+MA+LSAE FERP ++  +G + G+YDKL+ DGLV+PGTRVSG+D++IGKTTPL  GG GG+  G    SK+DSST M++HE G +D+VMLTTNQEGFKFCKV
Sbjct:  662 GVVEYVDTEEEETTMIAMDPSDLAAGGGYSTTYTHCEIHPSMILGICASIIPFPDHNQSPRNTYQSAMGKQAMGVYASNYQVRMDTLAHVLHYPMKPLVCTRSMEHLHFRELPSGVNVVVAIMCYTGYNQEDSLIMNQSAIDRGLFRSSYFRSIVDKEKA--GSGVGEMALLSAEQFERPNKDQCSGSRSGSYDKLDADGLVSPGTRVSGSDIIIGKTTPLAQGGAGGLTAGVNRFSKRDSSTAMKAHESGTIDQVMLTTNQEGFKFCKV 929
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BLAST of mRNA_H-paniculata_contig28569.7782.1 vs. uniprot
Match: A0A7S4QFE0_9STRA (DNA-directed RNA polymerase n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4QFE0_9STRA)

HSP 1 Score: 397 bits (1019), Expect = 4.660e-129
Identity = 196/269 (72.86%), Postives = 229/269 (85.13%), Query Frame = 1 
Query:    1 KGVVEYIDTEEEETTMIAMEPKDLEEAGGYSSTYTHCEIHPSMILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYASNYQLRMDTLAHVLHYPMKPLVTTRAMEHLHFRELPSGVNVIVGIMVYSGYNQEDSLIMNQSAIDRGLFRSSFFRTLSDQEKASAGRGMGDMAVLSAESFERPARENTAGMKHGNYDKLEDDGLVAPGTRVSGTDVLIGKTTPLGGGGGVMGGPGHRSKKDSSTVMRSHEDGIVDRVMLTTNQEGFKFCKV 807
            +G+VEYIDTEEEETTMIAMEPKDLE    YSSTYTHCEIHPSMILG+CASIIPFPDHNQSPRNTYQSAMGKQAMGIY+SNYQ+RMDT+AHVLHYP KPL TTRAME LHFRELPSGVN +V IMVY+GYNQEDSLIMNQSAIDRGLFRSS++R  +DQEKAS+   +G +  L++E+FE+P  ++  GMKHG Y KL+DDGLV PG RVSG D+LIGKT PL G  G+  GP   +K+D ST M+++E+GIVD VM++T +EG+KF KV
Sbjct:  627 EGLVEYIDTEEEETTMIAMEPKDLESGDSYSSTYTHCEIHPSMILGICASIIPFPDHNQSPRNTYQSAMGKQAMGIYSSNYQVRMDTMAHVLHYPQKPLCTTRAMEFLHFRELPSGVNCVVAIMVYTGYNQEDSLIMNQSAIDRGLFRSSYYRCYTDQEKASS---VGSIGSLTSETFEKPHMDSCRGMKHGEYGKLDDDGLVQPGARVSGDDILIGKTAPLDGTAGM--GPSRYTKRDCSTSMKANENGIVDNVMVSTTKEGYKFTKV 890
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BLAST of mRNA_H-paniculata_contig28569.7782.1 vs. uniprot
Match: A0A6U0RQ91_9STRA (DNA-directed RNA polymerase subunit beta n=2 Tax=Biddulphiophycidae TaxID=33837 RepID=A0A6U0RQ91_9STRA)

HSP 1 Score: 386 bits (991), Expect = 1.010e-127
Identity = 189/269 (70.26%), Postives = 226/269 (84.01%), Query Frame = 1 
Query:    1 KGVVEYIDTEEEETTMIAMEPKDLEEAGGYSSTYTHCEIHPSMILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYASNYQLRMDTLAHVLHYPMKPLVTTRAMEHLHFRELPSGVNVIVGIMVYSGYNQEDSLIMNQSAIDRGLFRSSFFRTLSDQEKASAGRGMGDMAVLSAESFERPARENTAGMKHGNYDKLEDDGLVAPGTRVSGTDVLIGKTTPLGGGGGVMGGPGHRSKKDSSTVMRSHEDGIVDRVMLTTNQEGFKFCKV 807
            +G+VEY+DTEEEETTMIAMEP DL+    YSSTYTHCEIHPSMILG+CASIIPFPDHNQSPRNTYQSAMGKQAMGIYASNYQ+RMDT+AHVLHYP KPL TTRAME LHFRELPSGVN +V IM+Y+GYNQEDSLI+NQSAIDRGLFRSS+FR  SDQEKAS+   +G +  L++E+FE+P+ +N  GMKHG+Y KL++DGL+  GTRVSG D+LIGKT P+    G+   P   +K+D ST M+S E GIVD V+++T +EG++F KV
Sbjct:  133 EGIVEYVDTEEEETTMIAMEPSDLDADESYSSTYTHCEIHPSMILGICASIIPFPDHNQSPRNTYQSAMGKQAMGIYASNYQVRMDTMAHVLHYPQKPLCTTRAMEFLHFRELPSGVNCVVAIMIYTGYNQEDSLILNQSAIDRGLFRSSYFRCYSDQEKASS---VGTIGSLTSETFEKPSFDNCRGMKHGDYGKLDEDGLIQSGTRVSGDDILIGKTAPMDSTAGM---PSKFTKRDCSTAMKSTESGIVDNVLISTTKEGYRFTKV 395
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BLAST of mRNA_H-paniculata_contig28569.7782.1 vs. uniprot
Match: A0A1Z5JUL8_FISSO (DNA-directed RNA polymerase subunit beta n=3 Tax=Naviculales TaxID=38748 RepID=A0A1Z5JUL8_FISSO)

HSP 1 Score: 397 bits (1020), Expect = 2.190e-127
Identity = 197/269 (73.23%), Postives = 229/269 (85.13%), Query Frame = 1 
Query:    1 KGVVEYIDTEEEETTMIAMEPKDLEEAGGYSSTYTHCEIHPSMILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYASNYQLRMDTLAHVLHYPMKPLVTTRAMEHLHFRELPSGVNVIVGIMVYSGYNQEDSLIMNQSAIDRGLFRSSFFRTLSDQEKASAGRGMGDMAVLSAESFERPARENTAGMKHGNYDKLEDDGLVAPGTRVSGTDVLIGKTTPLGGGGGVMGGPGHRSKKDSSTVMRSHEDGIVDRVMLTTNQEGFKFCKV 807
            +G+VEYIDTEEEETTMIAMEPKDL+    YSSTYTHCEIHPSMILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYASNYQ+RMDT+AHVLHYP KPL TTRAME LHFRELPSGVN +V IM+Y+GYNQEDSLIMNQSAIDRGLFRSS++R   DQEKAS+   +G +  L++E FE+PA +NT GMKHG Y KL+DDGLVAPGTRVSG DVLIGKT P+    G+   P   +K+D ST M+++E+GIVD V+++T +EG++F KV
Sbjct:  592 EGLVEYIDTEEEETTMIAMEPKDLDATDAYSSTYTHCEIHPSMILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYASNYQVRMDTMAHVLHYPQKPLCTTRAMEFLHFRELPSGVNCVVAIMIYTGYNQEDSLIMNQSAIDRGLFRSSYYRCYIDQEKASS---VGTIGSLTSELFEKPAMDNTRGMKHGEYGKLDDDGLVAPGTRVSGDDVLIGKTAPMDSTSGM---PSRYTKRDCSTSMKANENGIVDNVLISTTKEGYRFTKV 854
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BLAST of mRNA_H-paniculata_contig28569.7782.1 vs. uniprot
Match: A0A7S1FRA3_9STRA (DNA-directed RNA polymerase subunit beta n=2 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1FRA3_9STRA)

HSP 1 Score: 391 bits (1004), Expect = 4.820e-124
Identity = 199/271 (73.43%), Postives = 227/271 (83.76%), Query Frame = 1 
Query:    4 GVVEYIDTEEEETTMIAMEPKDLEEA---GGYSSTYTHCEIHPSMILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYASNYQLRMDTLAHVLHYPMKPLVTTRAMEHLHFRELPSGVNVIVGIMVYSGYNQEDSLIMNQSAIDRGLFRSSFFRTLSDQEKASAGRGMGDMAVLSAESFERPARENTAGMKHGNYDKLEDDGLVAPGTRVSGTDVLIGKTTPLGGGGGVMGGPGHRSKKDSSTVMRSHEDGIVDRVMLTTNQEGFKFCKV 807
            G+VEYIDTEEEETTMIAMEPKDLEE+   GGYSSTYTHCEIHP+MILG+CASIIPFPDHNQSPRNTYQSAMGKQAMGIYASNYQ+RMDT+AHVLHYP KPL TTRAME LHFRELPSGVN IVGIM+Y+GYNQEDSLI+NQSAIDRGLFRSS+FR  SDQEK     G G    L++E+FERP  +N  GMKHG Y KL++DGLV PG+RVSG D+LIGKT PL     VM  P   +K+D ST M+S ++GIVD VM++T +EG++F KV
Sbjct:  719 GIVEYIDTEEEETTMIAMEPKDLEESRRGGGYSSTYTHCEIHPAMILGICASIIPFPDHNQSPRNTYQSAMGKQAMGIYASNYQVRMDTMAHVLHYPQKPLCTTRAMEFLHFRELPSGVNCIVGIMIYTGYNQEDSLILNQSAIDRGLFRSSYFRCYSDQEK-----GSGASNPLNSETFERPLHDNCRGMKHGEYGKLDEDGLVQPGSRVSGEDILIGKTAPLETN-SVM--PSRYTKRDCSTPMKSTDNGIVDNVMISTTKEGYRFTKV 981
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BLAST of mRNA_H-paniculata_contig28569.7782.1 vs. uniprot
Match: A0A1E7ERG7_9STRA (DNA-directed RNA polymerase subunit beta n=6 Tax=Bacillariophyta TaxID=2836 RepID=A0A1E7ERG7_9STRA)

HSP 1 Score: 387 bits (995), Expect = 4.290e-123
Identity = 191/269 (71.00%), Postives = 226/269 (84.01%), Query Frame = 1 
Query:    1 KGVVEYIDTEEEETTMIAMEPKDLEEAGGYSSTYTHCEIHPSMILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYASNYQLRMDTLAHVLHYPMKPLVTTRAMEHLHFRELPSGVNVIVGIMVYSGYNQEDSLIMNQSAIDRGLFRSSFFRTLSDQEKASAGRGMGDMAVLSAESFERPARENTAGMKHGNYDKLEDDGLVAPGTRVSGTDVLIGKTTPLGGGGGVMGGPGHRSKKDSSTVMRSHEDGIVDRVMLTTNQEGFKFCKV 807
            +G+VEYIDTEEEETTM+AM+P DL     YSSTYTHCEIHPSMILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYASNYQ+RMDT+AHVLHYP KPL TTRAME LHFRELPSGVN IVGI+VY+GYNQEDSLIMNQSAIDRGLFRSS++R   DQEKAS+   +G +  L++E FE+P ++ T GMKHG Y KL++DGLVAPGTRVSG D+LIGKT P+     +   P   +K+D ST M+++E+GIVD V+++T +EG++F KV
Sbjct:  668 EGIVEYIDTEEEETTMVAMDPVDLNADESYSSTYTHCEIHPSMILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYASNYQVRMDTMAHVLHYPQKPLCTTRAMEFLHFRELPSGVNCIVGILVYTGYNQEDSLIMNQSAIDRGLFRSSYYRCYIDQEKASS---VGTLGTLNSEIFEKPTQDKTRGMKHGEYGKLDEDGLVAPGTRVSGDDILIGKTAPMDSSTNM---PSRYTKRDCSTSMKANENGIVDNVLISTTKEGYRFTKV 930
[Close]
BLAST of mRNA_H-paniculata_contig28569.7782.1 vs. uniprot
Match: B8C598_THAPS (DNA-directed RNA polymerase subunit beta n=2 Tax=Bacillariophyta TaxID=2836 RepID=B8C598_THAPS)

HSP 1 Score: 387 bits (994), Expect = 6.200e-123
Identity = 192/271 (70.85%), Postives = 230/271 (84.87%), Query Frame = 1 
Query:    1 KGVVEYIDTEEEETTMIAMEPKDLEEAGG--YSSTYTHCEIHPSMILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYASNYQLRMDTLAHVLHYPMKPLVTTRAMEHLHFRELPSGVNVIVGIMVYSGYNQEDSLIMNQSAIDRGLFRSSFFRTLSDQEKASAGRGMGDMAVLSAESFERPARENTAGMKHGNYDKLEDDGLVAPGTRVSGTDVLIGKTTPLGGGGGVMGGPGHRSKKDSSTVMRSHEDGIVDRVMLTTNQEGFKFCKV 807
            +G+VEY+DTEEEETTMIAMEPKDL+   G  YS+TYTHCEIHPSMILG+CASIIPFPDHNQSPRNTYQSAMGKQAMGIYASNYQ+RMDT+AHVLHYP KPL TTRAME LHFRELPSGVNV+V IM+Y+GYNQEDSLIMNQSAIDRGLFRSS++R  +DQEK+S+   +G +  L++E FERPA +N  GMK G+Y KL+DDGLV+PGTRVSG DVLIGKT P+     +   P   +K+D ST M+++E+GIVD V+++T +EG++F KV
Sbjct:  668 EGLVEYVDTEEEETTMIAMEPKDLDMTVGEPYSTTYTHCEIHPSMILGICASIIPFPDHNQSPRNTYQSAMGKQAMGIYASNYQVRMDTMAHVLHYPQKPLCTTRAMEFLHFRELPSGVNVVVAIMIYTGYNQEDSLIMNQSAIDRGLFRSSYYRCYNDQEKSSS---VGSVGALNSEFFERPAFDNCKGMKTGDYGKLDDDGLVSPGTRVSGDDVLIGKTAPMD---AIANTPSRYTKRDCSTSMKANENGIVDNVLISTTKEGYRFTKV 932
[Close]
BLAST of mRNA_H-paniculata_contig28569.7782.1 vs. uniprot
Match: K0RD88_THAOC (DNA-directed RNA polymerase subunit beta n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0RD88_THAOC)

HSP 1 Score: 388 bits (996), Expect = 1.570e-122
Identity = 193/269 (71.75%), Postives = 229/269 (85.13%), Query Frame = 1 
Query:    1 KGVVEYIDTEEEETTMIAMEPKDLEEAGGYSSTYTHCEIHPSMILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYASNYQLRMDTLAHVLHYPMKPLVTTRAMEHLHFRELPSGVNVIVGIMVYSGYNQEDSLIMNQSAIDRGLFRSSFFRTLSDQEKASAGRGMGDMAVLSAESFERPARENTAGMKHGNYDKLEDDGLVAPGTRVSGTDVLIGKTTPLGGGGGVMGGPGHRSKKDSSTVMRSHEDGIVDRVMLTTNQEGFKFCKV 807
            +G+VEY+DTEEEETTMIAMEPKDL E  GYSSTYTHCEIHPSMILGVCASIIPFPDHNQSPRN YQSAMGKQAMGIYASNYQ+RMDT+AHVLHYP KPL TTRAME L FRELPSGVNV+V IM+Y+GYNQEDSLIMNQSAIDRGLFRSS++R  +DQEKA++   +G +  L++E+FE+P  +NT GMK+G+Y+KL++DGLVAPGTRVSG DVLIGKTTP      +   P   +K+D ST M++ E GIVD V+++T +EG++F KV
Sbjct:  739 EGLVEYVDTEEEETTMIAMEPKDLGE--GYSSTYTHCEIHPSMILGVCASIIPFPDHNQSPRNVYQSAMGKQAMGIYASNYQVRMDTMAHVLHYPQKPLCTTRAMEFLKFRELPSGVNVVVAIMIYTGYNQEDSLIMNQSAIDRGLFRSSYYRCYNDQEKAAS---VGSVGALNSETFEKPTMDNTRGMKYGDYNKLDEDGLVAPGTRVSGDDVLIGKTTPTE---ALANAPSRYTKRDCSTSMKATESGIVDNVLISTTKEGYRFTKV 999
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig28569.7782.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JNN2_9PHAE9.870e-17795.19DNA-directed RNA polymerase subunit beta n=1 Tax=E... [more]
D7FHZ3_ECTSI1.940e-16995.19DNA-directed RNA polymerase subunit beta n=1 Tax=E... [more]
A0A835YQ41_9STRA1.760e-13877.04DNA-directed RNA polymerase subunit beta n=1 Tax=T... [more]
A0A7S4QFE0_9STRA4.660e-12972.86DNA-directed RNA polymerase n=1 Tax=Ditylum bright... [more]
A0A6U0RQ91_9STRA1.010e-12770.26DNA-directed RNA polymerase subunit beta n=2 Tax=B... [more]
A0A1Z5JUL8_FISSO2.190e-12773.23DNA-directed RNA polymerase subunit beta n=3 Tax=N... [more]
A0A7S1FRA3_9STRA4.820e-12473.43DNA-directed RNA polymerase subunit beta n=2 Tax=C... [more]
A0A1E7ERG7_9STRA4.290e-12371.00DNA-directed RNA polymerase subunit beta n=6 Tax=B... [more]
B8C598_THAPS6.200e-12370.85DNA-directed RNA polymerase subunit beta n=2 Tax=B... [more]
K0RD88_THAOC1.570e-12271.75DNA-directed RNA polymerase subunit beta n=1 Tax=T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig28569contigH-paniculata_contig28569:444..2505 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score513.5
Seed ortholog evalue6.2e-143
Seed eggNOG ortholog2880.D7FHZ3
Preferred nameRPB2
KEGG rclassRC02795
KEGG koko:K03010
KEGG ReactionR00435,R00441,R00442,R00443
KEGG Pathwayko00230,ko00240,ko01100,ko03020,ko05016,ko05169,map00230,map00240,map01100,map03020,map05016,map05169
KEGG ModuleM00180
Hectar predicted targeting categoryother localisation
GOsGO:0000428,GO:0003674,GO:0003676,GO:0003677,GO:0003824,GO:0003899,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005665,GO:0005737,GO:0005829,GO:0005911,GO:0006139,GO:0006351,GO:0006366,GO:0006396,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009506,GO:0009892,GO:0009987,GO:0010033,GO:0010467,GO:0010468,GO:0010494,GO:0010605,GO:0010608,GO:0010629,GO:0014070,GO:0016070,GO:0016441,GO:0016458,GO:0016591,GO:0016740,GO:0016772,GO:0016779,GO:0018130,GO:0019222,GO:0019438,GO:0030054,GO:0030880,GO:0031047,GO:0031050,GO:0031974,GO:0031981,GO:0032774,GO:0032991,GO:0034062,GO:0034641,GO:0034645,GO:0034654,GO:0035194,GO:0035195,GO:0035196,GO:0035770,GO:0036464,GO:0040029,GO:0042221,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043331,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044451,GO:0044464,GO:0046483,GO:0048519,GO:0050789,GO:0050896,GO:0051716,GO:0055029,GO:0055044,GO:0060255,GO:0061695,GO:0065007,GO:0070013,GO:0070887,GO:0070918,GO:0071310,GO:0071359,GO:0071407,GO:0071704,GO:0090304,GO:0097159,GO:0097659,GO:0097747,GO:0140098,GO:1901360,GO:1901362,GO:1901363,GO:1901576,GO:1901698,GO:1901699,GO:1902494,GO:1990234,GO:1990904
EggNOG free text desc.DNA-directed 5'-3' RNA polymerase activity
EggNOG OGsCOG0085@1,KOG0214@2759
EC2.7.7.6
COG Functional cat.K
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEbr01611,ko00000,ko00001,ko00002,ko01000,ko03021,ko03400
Exons3
Model size813
Cds size813
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig28569.7782.1prot_H-paniculata_contig28569.7782.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig28569 444..2505 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929868.453715-CDS-H-paniculata_contig28569:443..7701622929868.453715-CDS-H-paniculata_contig28569:443..770Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig28569 444..770 -
1691481046.5653827-CDS-H-paniculata_contig28569:443..7701691481046.5653827-CDS-H-paniculata_contig28569:443..770Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig28569 444..770 -
1622929868.4720767-CDS-H-paniculata_contig28569:1241..14811622929868.4720767-CDS-H-paniculata_contig28569:1241..1481Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig28569 1242..1481 -
1691481046.5850723-CDS-H-paniculata_contig28569:1241..14811691481046.5850723-CDS-H-paniculata_contig28569:1241..1481Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig28569 1242..1481 -
1622929868.4839337-CDS-H-paniculata_contig28569:2259..25051622929868.4839337-CDS-H-paniculata_contig28569:2259..2505Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig28569 2260..2505 -
1691481046.5976841-CDS-H-paniculata_contig28569:2259..25051691481046.5976841-CDS-H-paniculata_contig28569:2259..2505Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig28569 2260..2505 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig28569.7782.1

>prot_H-paniculata_contig28569.7782.1 ID=prot_H-paniculata_contig28569.7782.1|Name=mRNA_H-paniculata_contig28569.7782.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=271bp
KGVVEYIDTEEEETTMIAMEPKDLEEAGGYSSTYTHCEIHPSMILGVCAS
IIPFPDHNQSPRNTYQSAMGKQAMGIYASNYQLRMDTLAHVLHYPMKPLV
TTRAMEHLHFRELPSGVNVIVGIMVYSGYNQEDSLIMNQSAIDRGLFRSS
FFRTLSDQEKASAGRGMGDMAVLSAESFERPARENTAGMKHGNYDKLEDD
GLVAPGTRVSGTDVLIGKTTPLGGGGGVMGGPGHRSKKDSSTVMRSHEDG
IVDRVMLTTNQEGFKFCKVCV
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mRNA from alignment at H-paniculata_contig28569:444..2505-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig28569.7782.1 ID=mRNA_H-paniculata_contig28569.7782.1|Name=mRNA_H-paniculata_contig28569.7782.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2062bp|location=Sequence derived from alignment at H-paniculata_contig28569:444..2505- (Halopteris paniculata Hal_grac_a_UBK monoicous)
AAGGGCGTGGTGGAGTACATCGACACAGAGGAGGAAGAAACGACGATGAT
CGCCATGGAACCCAAGGACCTGGAAGAGGCCGGCGGATACTCTAGCACCT
ACACGCATTGCGAGATCCACCCTTCCATGATCCTGGGCGTATGTGCCTCG
ATTATCCCTTTCCCCGACCACAATCAGTCGCCGCGTAACACTTACCAGTC
TGCCATGGGCAAGCAAGCCATGGGAATCTACGCCAGCAACTACCAGGTAT
TGAATTTGCACCTGTGCTGCAGTGCATTGTAGTGTAGTGTAGTGTAGTGT
AGTGTAATTGTCACTTGCTTTTCTTTGGCCGCCGGTGCCGCTGTCTCTTT
TTTTTTTTCCCGTGAATTCTAGAACGGTTGGTTGAACTATATTCGGAAGG
GTTCCATGGACTGGATGGTCGGGTTGTCGCTGCTTTGTCCGCAATGCCCG
AATATTGGTCAAAGCACAACATGAAGTATATCGCGGAGTTAGCTTTCAAG
GCTCCACGAGCCTGGCGTAAACGGTTTCGGCGTTTTTCAGTTTTTGTTTT
TTAGTATATTCATGTATACCGACTTCGGCAGGGGCAACGGCGAAGAGTCG
AACCAATCCCCACCCTTGCGATAATTTGGCTGAATGTTTTCCTCCCTCGA
GCTTGACCCCCCTCCCTCCCTGGCATATGGGTGCCTGCCTGAGCTAGTAG
TAGTCCCGTCCGAGGCCTGACTTTGCGGAAACCCGCATACGTCAGCCCGG
TAAAACGGATGGAGACATCATAGTAGGACTGGCGTACAAAAGCTGAGATA
TATGTGTTACACTAATTAGTAACAGAAAATATTTGGCCTTGGTGCTCCTG
ATTATGAAACCAAAAGAAGGACCCCCCCCCCCCCCCTCCGCCGCCCCGCC
ACCGCCGCTTCCCTTTGCATCCTTCGTGTGTCGATCGTTGTTATTCGTTT
TCTTGTGAACATAACTCTGATTCATACTGAAACGAAAAAAAACAACAAAA
AAACGCAACTGTGCTGGTGTGTAGCTGCGGATGGATACCCTGGCACACGT
GCTTCACTACCCGATGAAGCCTCTGGTGACGACTCGCGCTATGGAGCATC
TCCACTTCCGAGAGCTGCCGTCTGGGGTGAACGTTATCGTGGGCATCATG
GTGTACTCGGGGTACAACCAGGAGGACTCCTTGATCATGAACCAAAGTGC
CATCGACCGGGGATTGTTCCGGTCGTCTTTCTTCAGAACACTCTCCGATC
AAGAGAAGGCGAGCGTTTTCTTTACTTGTCGTGTAGTATGTATTTTATCT
GTGCGGTGAAATGTTTTAGTGACCTGTAGTATTTAAGTTTGTGGATTTGT
TTTCTGTAGAAATTTGGAATTGGTGTTATTTTCCAAACAATTCACACTCT
TCTTCTCCCAGTGTTTTATTCAGTTCAATGGTGATGTACGTAAGTGTAGA
GAGTTACGGTGACAGTCATGCCCACTTTCATCTTCACTTCCATCTTATCC
CCAAACGGTTTAGCTGAACTGATTTGATGTGATCTGGTATTATTCACCTC
CAAACACGGGAGGAGAAAACGGATTGGTCGCTGTGGTGACGAAACATGTC
ACATTTGTCCCCTGTGTTGTTGCAAGTTTGTTTGGTTTCTAGTTGAGCAT
GATATCTTACACATTTCTCGTCCTAACGGACACCATGTCATTACACAAAA
AACACTATCCAATCCGATCATCCACAACCCCACAGGCGGGGCGAGGCATG
GGTGACATGGCGGTCCTTTCAGCCGAGTCGTTTGAACGTCCGGCCCGAGA
AAATACAGCGGGCATGAAACACGGGAACTACGACAAGCTCGAGGACGACG
GGCTCGTGGCGCCGGGGACCCGTGTGTCGGGAACTGACGTGCTGATCGGC
AAGACTACGCCGCTGGGAGGCGGGGGCGGGGTGATGGGGGGGCCCGGGCA
CCGGAGCAAGAAGGACTCGAGCACCGTCATGCGCTCCCACGAAGACGGCA
TCGTGGATCGCGTTATGCTCACCACTAACCAGGAGGGCTTCAAGTTCTGC
AAAGTATGTGTG
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Coding sequence (CDS) from alignment at H-paniculata_contig28569:444..2505-

>mRNA_H-paniculata_contig28569.7782.1 ID=mRNA_H-paniculata_contig28569.7782.1|Name=mRNA_H-paniculata_contig28569.7782.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1626bp|location=Sequence derived from alignment at H-paniculata_contig28569:444..2505- (Halopteris paniculata Hal_grac_a_UBK monoicous)
AAGGGCGTGGTGGAGTACATCGACACAGAGGAGGAAGAAACGACGATGAT
CGCCATGGAACCCAAGGACCTGGAAGAGGCCGGCGGATACTCTAGCACCT
ACACGCATTGCGAGATCCACCCTTCCATGATCCTGGGCGTATGTGCCTCG
ATTATCCCTTTCCCCGACCACAATCAGTCGCCGCGTAACACTTACCAGTC
TGCCATGGGCAAGCAAGCCATGGGAATCTACGCCAGCAACTACCAGAAGG
GCGTGGTGGAGTACATCGACACAGAGGAGGAAGAAACGACGATGATCGCC
ATGGAACCCAAGGACCTGGAAGAGGCCGGCGGATACTCTAGCACCTACAC
GCATTGCGAGATCCACCCTTCCATGATCCTGGGCGTATGTGCCTCGATTA
TCCCTTTCCCCGACCACAATCAGTCGCCGCGTAACACTTACCAGTCTGCC
ATGGGCAAGCAAGCCATGGGAATCTACGCCAGCAACTACCAGCTGCGGAT
GGATACCCTGGCACACGTGCTTCACTACCCGATGAAGCCTCTGGTGACGA
CTCGCGCTATGGAGCATCTCCACTTCCGAGAGCTGCCGTCTGGGGTGAAC
GTTATCGTGGGCATCATGGTGTACTCGGGGTACAACCAGGAGGACTCCTT
GATCATGAACCAAAGTGCCATCGACCGGGGATTGTTCCGGTCGTCTTTCT
TCAGAACACTCTCCGATCAAGAGAAGGCGAGCCTGCGGATGGATACCCTG
GCACACGTGCTTCACTACCCGATGAAGCCTCTGGTGACGACTCGCGCTAT
GGAGCATCTCCACTTCCGAGAGCTGCCGTCTGGGGTGAACGTTATCGTGG
GCATCATGGTGTACTCGGGGTACAACCAGGAGGACTCCTTGATCATGAAC
CAAAGTGCCATCGACCGGGGATTGTTCCGGTCGTCTTTCTTCAGAACACT
CTCCGATCAAGAGAAGGCGAGCGCGGGGCGAGGCATGGGTGACATGGCGG
TCCTTTCAGCCGAGTCGTTTGAACGTCCGGCCCGAGAAAATACAGCGGGC
ATGAAACACGGGAACTACGACAAGCTCGAGGACGACGGGCTCGTGGCGCC
GGGGACCCGTGTGTCGGGAACTGACGTGCTGATCGGCAAGACTACGCCGC
TGGGAGGCGGGGGCGGGGTGATGGGGGGGCCCGGGCACCGGAGCAAGAAG
GACTCGAGCACCGTCATGCGCTCCCACGAAGACGGCATCGTGGATCGCGT
TATGCTCACCACTAACCAGGAGGGCTTCAAGTTCTGCAAAGTATGTGTGG
CGGGGCGAGGCATGGGTGACATGGCGGTCCTTTCAGCCGAGTCGTTTGAA
CGTCCGGCCCGAGAAAATACAGCGGGCATGAAACACGGGAACTACGACAA
GCTCGAGGACGACGGGCTCGTGGCGCCGGGGACCCGTGTGTCGGGAACTG
ACGTGCTGATCGGCAAGACTACGCCGCTGGGAGGCGGGGGCGGGGTGATG
GGGGGGCCCGGGCACCGGAGCAAGAAGGACTCGAGCACCGTCATGCGCTC
CCACGAAGACGGCATCGTGGATCGCGTTATGCTCACCACTAACCAGGAGG
GCTTCAAGTTCTGCAAAGTATGTGTG
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