mRNA_H-paniculata_contig24372.6602.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig24372.6602.1 vs. uniprot
Match: A0A8J4CGM5_9CHLO (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=1 Tax=Volvox reticuliferus TaxID=1737510 RepID=A0A8J4CGM5_9CHLO) HSP 1 Score: 79.7 bits (195), Expect = 3.770e-16 Identity = 46/126 (36.51%), Postives = 64/126 (50.79%), Query Frame = 1
Query: 7 PPNFQEAVRFEHSSVYHNAMTTEYQDLIQTGTFDQENPFNNKKPTNSMWIHIWKTDPNCIVTGAKARLVARGDKQVQGLDCDNTFAPTPLIATVKTGTAVANELGLSIFHWDVSQTFIQGELEEDI 384
P ++EA+ + + AM E L GT+ E+P W++ K D N + KAR VA+G KQ++G+D D FAPT ATV+ A A G+ + H DV F+ GELEE I
Sbjct: 2 PSTYEEAINSPEAVHWRQAMDEEIASLHAQGTWRLEHPPQGANVIPGKWVYKLKRDANGGIERYKARYVAKGYKQIEGVDFDEVFAPTGCHATVRAFLASAAAEGMEVHHVDVRTAFLHGELEEQI 127
BLAST of mRNA_H-paniculata_contig24372.6602.1 vs. uniprot
Match: A0A1Y1L0U6_PHOPY (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=1 Tax=Photinus pyralis TaxID=7054 RepID=A0A1Y1L0U6_PHOPY) HSP 1 Score: 77.8 bits (190), Expect = 2.670e-15 Identity = 48/134 (35.82%), Postives = 69/134 (51.49%), Query Frame = 1
Query: 4 APPNFQEAVRFEHSSVYHNAMTTEYQDLIQTGTFDQENPFNNKKPTNSMWIHIWKTDPNCIVTGAKARLVARGDKQVQGLDCDNTFAPTPLIATVKTGTAVANELGLSIFHWDVSQTFIQGELEEDICLRLAEG 405
AP ++ EA+R +S + AM E Q L + + + KK S W++ KT + KARLVA+G Q G+D TF+P T++T VA L + +DVS TF+ G+LEE+I L EG
Sbjct: 18 APQSYAEAMRSSNSEEWTKAMAEEIQALNKNQVWTLQVLPEGKKAIQSRWVYKIKTKTGDTIERFKARLVAKGCSQKHGIDIQETFSPVARYETIRTVLGVAAAEKLHLTQFDVSTTFLYGDLEEEIFLSQPEG 151
BLAST of mRNA_H-paniculata_contig24372.6602.1 vs. uniprot
Match: A0A8J4BZC1_9CHLO (Integrase catalytic domain-containing protein (Fragment) n=1 Tax=Volvox reticuliferus TaxID=1737510 RepID=A0A8J4BZC1_9CHLO) HSP 1 Score: 79.7 bits (195), Expect = 1.020e-14 Identity = 46/126 (36.51%), Postives = 64/126 (50.79%), Query Frame = 1
Query: 7 PPNFQEAVRFEHSSVYHNAMTTEYQDLIQTGTFDQENPFNNKKPTNSMWIHIWKTDPNCIVTGAKARLVARGDKQVQGLDCDNTFAPTPLIATVKTGTAVANELGLSIFHWDVSQTFIQGELEEDI 384
P ++EA+ + + AM E L GT+ E+P W++ K D N + KAR VA+G KQ++G+D D FAPT ATV+ A A G+ + H DV F+ GELEE I
Sbjct: 597 PSTYEEAINSPEAVHWRQAMDEEIASLHAQGTWRLEHPPQGANVIPGKWVYKLKRDANGGIERYKARYVAKGYKQIEGVDFDEVFAPTGCHATVRAFLASAAAEGMEVHHVDVRTAFLHGELEEQI 722
BLAST of mRNA_H-paniculata_contig24372.6602.1 vs. uniprot
Match: A0A8J4FJX1_9CHLO (Uncharacterized protein (Fragment) n=2 Tax=Volvox reticuliferus TaxID=1737510 RepID=A0A8J4FJX1_9CHLO) HSP 1 Score: 79.7 bits (195), Expect = 1.020e-14 Identity = 46/126 (36.51%), Postives = 64/126 (50.79%), Query Frame = 1
Query: 7 PPNFQEAVRFEHSSVYHNAMTTEYQDLIQTGTFDQENPFNNKKPTNSMWIHIWKTDPNCIVTGAKARLVARGDKQVQGLDCDNTFAPTPLIATVKTGTAVANELGLSIFHWDVSQTFIQGELEEDI 384
P ++EA+ + + AM E L GT+ E+P W++ K D N + KAR VA+G KQ++G+D D FAPT ATV+ A A G+ + H DV F+ GELEE I
Sbjct: 869 PSTYEEAINSPEAVHWRQAMDEEIASLHAQGTWRLEHPPQGANVIPGKWVYKLKRDANGGIERYKARYVAKGYKQIEGVDFDEVFAPTGCHATVRAFLASAAAEGMEVHHVDVRTAFLHGELEEQI 994
BLAST of mRNA_H-paniculata_contig24372.6602.1 vs. uniprot
Match: A0A8J4GWX3_9CHLO (Uncharacterized protein n=8 Tax=Volvox reticuliferus TaxID=1737510 RepID=A0A8J4GWX3_9CHLO) HSP 1 Score: 79.7 bits (195), Expect = 1.050e-14 Identity = 46/126 (36.51%), Postives = 64/126 (50.79%), Query Frame = 1
Query: 7 PPNFQEAVRFEHSSVYHNAMTTEYQDLIQTGTFDQENPFNNKKPTNSMWIHIWKTDPNCIVTGAKARLVARGDKQVQGLDCDNTFAPTPLIATVKTGTAVANELGLSIFHWDVSQTFIQGELEEDI 384
P ++EA+ + + AM E L GT+ E+P W++ K D N + KAR VA+G KQ++G+D D FAPT ATV+ A A G+ + H DV F+ GELEE I
Sbjct: 871 PSTYEEAINSPEAVHWRQAMDEEIASLHAQGTWRLEHPPQGANVIPGKWVYKLKRDANGGIERYKARYVAKGYKQIEGVDFDEVFAPTGCHATVRAFLASAAAEGMEVHHVDVRTAFLHGELEEQI 996
BLAST of mRNA_H-paniculata_contig24372.6602.1 vs. uniprot
Match: A0A7D9D6Q5_PARCT (Retrovirus-related Pol poly from transposon TNT 1-94 n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A7D9D6Q5_PARCT) HSP 1 Score: 79.0 bits (193), Expect = 1.900e-14 Identity = 46/133 (34.59%), Postives = 68/133 (51.13%), Query Frame = 1
Query: 7 PPNFQEAVRFEHSSVYHNAMTTEYQDLIQTGTFDQENPFNNKKPTNSMWIHIWKTDPNCIVTGAKARLVARGDKQVQGLDCDNTFAPTPLIATVKTGTAVANELGLSIFHWDVSQTFIQGELEEDICLRLAEG 405
P N EA EHS+ + A +E LI+ T++ + K S W+ KTD N V KARLVA+G Q +G+D F+P T+++ A++N + DV F+QG LEE+I +R +G
Sbjct: 810 PINMDEAFSGEHSAEWKQATDSENNSLIENETWELVSLPKGKNVVGSKWVFKVKTDENGCVQRYKARLVAQGYTQAEGVDYSEVFSPVVRNTTIRSLLALSNAKNWEVHQMDVKTAFLQGNLEEEIYMRQPDG 942
BLAST of mRNA_H-paniculata_contig24372.6602.1 vs. uniprot
Match: O04013_VOLCA (Reverse transcriptase, gag, polyprotein n=1 Tax=Volvox carteri f. nagariensis TaxID=3068 RepID=O04013_VOLCA) HSP 1 Score: 79.0 bits (193), Expect = 1.940e-14 Identity = 46/135 (34.07%), Postives = 72/135 (53.33%), Query Frame = 1
Query: 1 PAPPNFQEAVRFEHSSVYHNAMTTEYQDLIQTGTFDQENPFNNKKPTNSMWIHIWKTDPNCIVTGAKARLVARGDKQVQGLDCDNTFAPTPLIATVKTGTAVANELGLSIFHWDVSQTFIQGELEEDICLRLAEG 405
P P +FQEA++ + ++ AM E L + GT+ E+P + W++ K+ + V KAR VA+G QV+G+D D FAPT ATV+ + A G+ + H DV F+ G+L+E + + EG
Sbjct: 842 PNPTSFQEAIKSPQADMWWEAMEEEIASLHRLGTWRLEHPPPDANVVPGRWVYKVKSGADGEVERYKARFVAKGYMQVEGVDYDEVFAPTSNHATVRAFSPKAAAKGIEVHHLDVRTAFLHGDLDEVVYVDQPEG 976
BLAST of mRNA_H-paniculata_contig24372.6602.1 vs. uniprot
Match: A0A251TQK1_HELAN (Putative reverse transcriptase, RNA-dependent DNA polymerase n=1 Tax=Helianthus annuus TaxID=4232 RepID=A0A251TQK1_HELAN) HSP 1 Score: 74.3 bits (181), Expect = 2.360e-14 Identity = 42/115 (36.52%), Postives = 64/115 (55.65%), Query Frame = 1
Query: 61 AMTTEYQDLIQTGTFDQENPFNNKKPTNSMWIHIWKTDPNCIVTGAKARLVARGDKQVQGLDCDNTFAPTPLIATVKTGTAVANELGLSIFHWDVSQTFIQGELEEDICLRLAEG 405
AM E + L + G + EN K+ +S W++ K PN V KARLVA G Q +G+D +TFAP + TV+T AVA + I D++ F+ G+L ED+ +++ +G
Sbjct: 9 AMEKEIRALEENGIWTLENLPEGKRTIDSKWVYKVKYKPNGEVERYKARLVANGFTQQEGVDYHDTFAPVAKLVTVRTLLAVATKKNWIISQLDLNNAFLHGDLNEDVNMKIPQG 123
BLAST of mRNA_H-paniculata_contig24372.6602.1 vs. uniprot
Match: A0A8J4GXS9_9CHLO (Integrase catalytic domain-containing protein n=1 Tax=Volvox reticuliferus TaxID=1737510 RepID=A0A8J4GXS9_9CHLO) HSP 1 Score: 78.6 bits (192), Expect = 2.580e-14 Identity = 46/126 (36.51%), Postives = 64/126 (50.79%), Query Frame = 1
Query: 7 PPNFQEAVRFEHSSVYHNAMTTEYQDLIQTGTFDQENPFNNKKPTNSMWIHIWKTDPNCIVTGAKARLVARGDKQVQGLDCDNTFAPTPLIATVKTGTAVANELGLSIFHWDVSQTFIQGELEEDI 384
P ++EA+ + + AM E L GT+ E+P W++ K D N + KAR VA+G KQ++G+D D FAPT ATV+ A A G+ + H DV F+ GELEE I
Sbjct: 451 PSTYEEAINSLEAVHWRQAMDEEIASLHAQGTWRLEHPPQGANVIPGKWVYKLKRDANGGIERYKARYVAKGYKQIEGVDFDEVFAPTGCHATVQAFLASAAAEGMEVHHVDVRTAFLHGELEEQI 576
BLAST of mRNA_H-paniculata_contig24372.6602.1 vs. uniprot
Match: A0A2K3MX29_TRIPR (Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment) n=1 Tax=Trifolium pratense TaxID=57577 RepID=A0A2K3MX29_TRIPR) HSP 1 Score: 78.6 bits (192), Expect = 2.630e-14 Identity = 47/133 (35.34%), Postives = 74/133 (55.64%), Query Frame = 1
Query: 7 PPNFQEAVRFEHSSVYHNAMTTEYQDLIQTGTFDQENPFNNKKPTNSMWIHIWKTDPNCIVTGAKARLVARGDKQVQGLDCDNTFAPTPLIATVKTGTAVANELGLSIFHWDVSQTFIQGELEEDICLRLAEG 405
P +F EAV+ E + +AM E + L GT+ E+ + KK WI+ K + + + KARLV G++QV+G+D + TFAPT + TV+T AVA + DV F+ G+L+E++ ++L G
Sbjct: 691 PNSFAEAVKDEK---WRDAMKEEIRALEDNGTWTIEDLPSGKKAIGCKWIYKIKYNSDGSIERHKARLVIHGNRQVEGVDYNETFAPTAKMVTVRTFLAVAAAKNFQLHQMDVRNAFLHGDLDEEVYMKLPPG 820 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig24372.6602.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig24372.6602.1 >prot_H-paniculata_contig24372.6602.1 ID=prot_H-paniculata_contig24372.6602.1|Name=mRNA_H-paniculata_contig24372.6602.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=135bp PAPPNFQEAVRFEHSSVYHNAMTTEYQDLIQTGTFDQENPFNNKKPTNSMback to top mRNA from alignment at H-paniculata_contig24372:1562..1966- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig24372.6602.1 ID=mRNA_H-paniculata_contig24372.6602.1|Name=mRNA_H-paniculata_contig24372.6602.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=405bp|location=Sequence derived from alignment at H-paniculata_contig24372:1562..1966- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig24372:1562..1966- >mRNA_H-paniculata_contig24372.6602.1 ID=mRNA_H-paniculata_contig24372.6602.1|Name=mRNA_H-paniculata_contig24372.6602.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=810bp|location=Sequence derived from alignment at H-paniculata_contig24372:1562..1966- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |