prot_H-paniculata_contig24061.6513.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig24061.6513.1
Unique Nameprot_H-paniculata_contig24061.6513.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length111
Homology
BLAST of mRNA_H-paniculata_contig24061.6513.1 vs. uniprot
Match: D8LF37_ECTSI (S1 motif domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LF37_ECTSI)

HSP 1 Score: 174 bits (441), Expect = 2.120e-53
Identity = 86/108 (79.63%), Postives = 98/108 (90.74%), Query Frame = 0
Query:    1 MTEIVCPGKRLGRVSQFRAGPGTYERGMYIFASVVGPKVEQRAED-GGKPFLIVT--KRARAADQVIEVGDVVMGRVTRITTRQAWVEIMCVGETVLREPHKGVVRKE 105
            MTE+VCPGKRLGR S++RAGPGTY RG YI+ASVVGPK+EQ A D  GKP+LIV+  KRARAADQVI+VGD VMGRVTRI+TRQAWVEI+CVGETVLREPH+G+VRKE
Sbjct:    1 MTEVVCPGKRLGRASEYRAGPGTYVRGTYIYASVVGPKLEQAAADEDGKPYLIVSQPKRARAADQVIQVGDTVMGRVTRISTRQAWVEIICVGETVLREPHRGIVRKE 108          
BLAST of mRNA_H-paniculata_contig24061.6513.1 vs. uniprot
Match: A0A835YI70_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YI70_9STRA)

HSP 1 Score: 127 bits (319), Expect = 7.120e-35
Identity = 60/104 (57.69%), Postives = 76/104 (73.08%), Query Frame = 0
Query:    2 TEIVCPGKRLGRVSQFRAGPGTYERGMYIFASVVGPKVEQRAEDGGKPFLIVTKRARAADQVIEVGDVVMGRVTRITTRQAWVEIMCVGETVLREPHKGVVRKE 105
            T++ CPG RLGR S+F +GPGTY RG +IFAS+VGP ++Q   +GG P + V     A DQVIEVGDVVM RVTR+    A VEI+C GETVLRE + G+++KE
Sbjct:    4 TQLACPGDRLGRASEFTSGPGTYTRGPHIFASLVGPVLQQEGAEGGLPVITVRGGRNAQDQVIEVGDVVMARVTRVRALLASVEILCAGETVLREAYNGIIKKE 107          
BLAST of mRNA_H-paniculata_contig24061.6513.1 vs. uniprot
Match: H6WBA8_VAULI (S1 motif domain-containing protein n=1 Tax=Vaucheria litorea TaxID=109269 RepID=H6WBA8_VAULI)

HSP 1 Score: 92.0 bits (227), Expect = 4.940e-21
Identity = 46/105 (43.81%), Postives = 69/105 (65.71%), Query Frame = 0
Query:    1 MTEIVCPGKRLGRVSQFRAGPGTYERGMYIFASVVGPKVEQRAEDGGKPFLIVTKRARAADQVIEVGDVVMGRVTRITTRQAWVEIMCVGETVLREPHKGVVRKE 105
            M+  VCPG R+GR  ++ +G GTY RG +I++S+VG ++++       P L V  +     Q++EVG VVMGRVTR+    A V+I+C G+ VLRE  +G++RKE
Sbjct:    1 MSTTVCPGDRIGRCDEYTSGNGTYVRGPHIYSSLVG-RIQKIEVPENLPVLTVKGKKAVVGQILEVGVVVMGRVTRVKNNLASVDILCAGKFVLREICQGIIRKE 104          
BLAST of mRNA_H-paniculata_contig24061.6513.1 vs. uniprot
Match: W7U6U4_9STRA (3-5 exoribonuclease csl4 n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7U6U4_9STRA)

HSP 1 Score: 85.5 bits (210), Expect = 3.050e-18
Identity = 46/110 (41.82%), Postives = 72/110 (65.45%), Query Frame = 0
Query:    4 IVCPGKRLGRVSQFRAGPGTYERGMYIFASVVGP-KVEQRAEDGGKPFLIVTK-------RARAADQVIEVGDVVMGRVTRITTRQAWVEIMCVGETVLREPHKGVVRKE 105
            I  PG R+GR+S  ++GPGTY +G +I+AS++G  ++ Q  ++G  P L V+         A A + V+ VG VV  RV RIT++QA+VEI+ +G  VLR+  +G+++KE
Sbjct:   14 IAAPGDRIGRISSHQSGPGTYIKGGHIYASILGNIQILQPEKEGDLPMLRVSNPYKADADHAGAQNVVLAVGHVVTTRVLRITSKQAYVEILALGSVVLRQTCQGIIKKE 123          
BLAST of mRNA_H-paniculata_contig24061.6513.1 vs. uniprot
Match: A0A397V822_9GLOM (S1 motif domain-containing protein n=2 Tax=Gigaspora TaxID=4873 RepID=A0A397V822_9GLOM)

HSP 1 Score: 81.3 bits (199), Expect = 8.280e-17
Identity = 40/105 (38.10%), Postives = 62/105 (59.05%), Query Frame = 0
Query:    1 MTEIVCPGKRLGRVSQFRAGPGTYERGMYIFASVVGPKVEQRAEDGGKPFLIVTKRARAADQVIEVGDVVMGRVTRITTRQAWVEIMCVGETVLREPHKGVVRKE 105
            +T+ V PG+RL       AGPG YERG Y++ASVVG   E      G+P ++   R +    V +VG ++ G+V R+TT++A V IM VG    ++  +G++R +
Sbjct:    4 LTKYVTPGRRLCFSEGVTAGPGVYERGEYLYASVVGVVQELAPTTEGEPRVVTVTREKVHSAVPDVGSIITGKVIRMTTKEAVVSIMVVGNMPCKDDFQGIIRSQ 108          
BLAST of mRNA_H-paniculata_contig24061.6513.1 vs. uniprot
Match: A0A087SJQ6_AUXPR (Exosome complex component CSL4 n=1 Tax=Auxenochlorella protothecoides TaxID=3075 RepID=A0A087SJQ6_AUXPR)

HSP 1 Score: 76.6 bits (187), Expect = 4.350e-15
Identity = 48/107 (44.86%), Postives = 64/107 (59.81%), Query Frame = 0
Query:    1 MTEIVCPGKRLGRVSQFRAGPGTYERGMYIFASVVGPK----VEQRAEDGGKPFLIVTKRARAADQVIEVGDVVMGRVTRITTRQAWVEIMCVGETVLREPHKGVVR 103
            MTE   PG+RLG V++F  G GTY  G ++ AS+VG +    VE+ A D   P L V++  R  D V   GDVV  R+TR+T R A  +I+CVGE    + + GVVR
Sbjct:    1 MTETCTPGQRLGLVTEFEPGAGTYVAGSFVCASLVGIQRTVPVEETA-DKRLPRLEVSRSTRP-DPVPSPGDVVTARITRLTPRLALADILCVGEHPCAQRYSGVVR 105          
BLAST of mRNA_H-paniculata_contig24061.6513.1 vs. uniprot
Match: A0A1S8VWT9_9FUNG (S1 motif domain-containing protein n=2 Tax=Batrachochytrium salamandrivorans TaxID=1357716 RepID=A0A1S8VWT9_9FUNG)

HSP 1 Score: 76.6 bits (187), Expect = 4.890e-15
Identity = 46/101 (45.54%), Postives = 62/101 (61.39%), Query Frame = 0
Query:    5 VCPGKRLGRVSQFRAGPGTYERGMYIFASVVGPKVEQRAEDG--GKPFLIVTKRARAADQVIEVGDVVMGRVTRITTRQAWVEIMCVGETVLREPHKGVVR 103
            V PG+ LG  S+F A  GTY RG +I ASV+G K +  A DG    P L V +  +AA  V E+G++++G+VTRI  R A V IM V +T   E  +GV+R
Sbjct:    9 VFPGQCLGLSSEFTASTGTYSRGEFIHASVLGKK-QAGAADGLSSMPTLTVVRNKQAAAGVPEIGNIIIGKVTRINPRFASVSIMVVADTPCTETFQGVIR 108          
BLAST of mRNA_H-paniculata_contig24061.6513.1 vs. uniprot
Match: A0A8K1CT14_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CT14_PYTOL)

HSP 1 Score: 75.5 bits (184), Expect = 7.870e-15
Identity = 45/106 (42.45%), Postives = 65/106 (61.32%), Query Frame = 0
Query:    4 IVCPGKRLG-RVSQFRAGPGTYERGMYIFASVVGPKVEQRAEDGGKPFLIVTKRAR---AADQVIEVGDVVMGRVTRITTRQAWVEIMCVGETVLREPHKGVVRKE 105
            IV PG+RL  + +  RAG GTY R   ++ASV G   +Q  E       +  KRA     + QV+ +GD+V+ +VT++TTRQ  V+I+CVG+ VL+EP  G +R E
Sbjct:    9 IVVPGQRLSAQEAGVRAGEGTYVRDGAVYASVTGRYAKQNNE-------MTVKRAGKLVGSSQVLRLGDLVICKVTKVTTRQVLVDIVCVGDAVLQEPFPGTIRLE 107          
BLAST of mRNA_H-paniculata_contig24061.6513.1 vs. uniprot
Match: A0A397G0E9_9GLOM (S1 motif domain-containing protein n=1 Tax=Diversispora epigaea TaxID=1348612 RepID=A0A397G0E9_9GLOM)

HSP 1 Score: 75.9 bits (185), Expect = 1.060e-14
Identity = 41/108 (37.96%), Postives = 64/108 (59.26%), Query Frame = 0
Query:    5 VCPGKRLGRVSQFRAGPGTYERGMYIFASVVG------PKVEQRAEDGGKPFLIVT-KRARAADQVIEVGDVVMGRVTRITTRQAWVEIMCVGETVLREPHKGVVRKE 105
            V PG RL   S++ AGPGTYER  YI++SVVG      P V     +  K   I+T  + +    + +VG+++ G+V R+TTR+A V IM VG    ++ ++G++R +
Sbjct:    4 VTPGTRLCFASEYEAGPGTYEREEYIYSSVVGIVQEFIPTVSTNTGEEKKQSKIITVSKEKHQSSIPDVGNIITGKVIRMTTREAVVSIMVVGNIPCKDDYQGIIRSQ 111          
BLAST of mRNA_H-paniculata_contig24061.6513.1 vs. uniprot
Match: A0A7S2GDT7_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2GDT7_9STRA)

HSP 1 Score: 75.5 bits (184), Expect = 1.700e-14
Identity = 44/104 (42.31%), Postives = 60/104 (57.69%), Query Frame = 0
Query:    5 VCPGKRLGRVSQFRAGPGTYERGMYIFASVVGP-KVEQRAEDGGKPFLIVTKRARAAD--QVIEVGDVVMGRVTRITTRQAWVEIMCVGETVLREPHKGVVRKE 105
            V PG+ +        G GTYER   IFA++ G  KVE+    G KP + V    +  +  QV  VG V+MGRVTRIT   A V+I C+G+ +LR+P  G++R E
Sbjct:   15 VVPGEHIIESQMVVTGNGTYERDGQIFAALAGKVKVEEPETGGNKPMVTVGHWLQKDNTKQVPRVGQVIMGRVTRITANTAQVDITCLGDNILRQPCSGMIRTE 118          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig24061.6513.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LF37_ECTSI2.120e-5379.63S1 motif domain-containing protein n=2 Tax=Ectocar... [more]
A0A835YI70_9STRA7.120e-3557.69Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
H6WBA8_VAULI4.940e-2143.81S1 motif domain-containing protein n=1 Tax=Vaucher... [more]
W7U6U4_9STRA3.050e-1841.823-5 exoribonuclease csl4 n=1 Tax=Nannochloropsis g... [more]
A0A397V822_9GLOM8.280e-1738.10S1 motif domain-containing protein n=2 Tax=Gigaspo... [more]
A0A087SJQ6_AUXPR4.350e-1544.86Exosome complex component CSL4 n=1 Tax=Auxenochlor... [more]
A0A1S8VWT9_9FUNG4.890e-1545.54S1 motif domain-containing protein n=2 Tax=Batrach... [more]
A0A8K1CT14_PYTOL7.870e-1542.45Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A397G0E9_9GLOM1.060e-1437.96S1 motif domain-containing protein n=1 Tax=Diversi... [more]
A0A7S2GDT7_9STRA1.700e-1442.31Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR025721Exosome complex component, N-terminal domainPFAMPF14382ECR1_Ncoord: 4..37
e-value: 7.6E-12
score: 44.8
NoneNo IPR availableGENE3D2.40.50.140coord: 57..109
e-value: 2.1E-9
score: 39.1
NoneNo IPR availableGENE3D2.40.50.100coord: 3..53
e-value: 8.4E-14
score: 52.7
NoneNo IPR availableSUPERFAMILY110324Ribosomal L27 protein-likecoord: 3..42
IPR019495Exosome complex component CSL4, C-terminalPFAMPF10447EXOSC1coord: 65..93
e-value: 3.4E-6
score: 27.6
IPR039771Exosome complex component Csl4PANTHERPTHR126863'-5' EXORIBONUCLEASE CSL4-RELATEDcoord: 2..105
IPR012340Nucleic acid-binding, OB-foldSUPERFAMILY50249Nucleic acid-binding proteinscoord: 63..105

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig24061contigH-paniculata_contig24061:435..1350 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig24061.6513.1mRNA_H-paniculata_contig24061.6513.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig24061 435..1350 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig24061.6513.1 ID=prot_H-paniculata_contig24061.6513.1|Name=mRNA_H-paniculata_contig24061.6513.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=111bp
MTEIVCPGKRLGRVSQFRAGPGTYERGMYIFASVVGPKVEQRAEDGGKPF
LIVTKRARAADQVIEVGDVVMGRVTRITTRQAWVEIMCVGETVLREPHKG
VVRKEVSSVC*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR025721Exosome_cplx_N_dom
IPR019495EXOSC1_C
IPR039771Csl4
IPR012340NA-bd_OB-fold