mRNA_H-paniculata_contig24061.6513.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig24061.6513.1 vs. uniprot
Match: D8LF37_ECTSI (S1 motif domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LF37_ECTSI) HSP 1 Score: 174 bits (441), Expect = 2.120e-53 Identity = 86/108 (79.63%), Postives = 98/108 (90.74%), Query Frame = 1
Query: 1 MTEIVCPGKRLGRVSQFRAGPGTYERGMYIFASVVGPKVEQRAED-GGKPFLIVT--KRARAADQVIEVGDVVMGRVTRITTRQAWVEIMCVGETVLREPHKGVVRKE 315
MTE+VCPGKRLGR S++RAGPGTY RG YI+ASVVGPK+EQ A D GKP+LIV+ KRARAADQVI+VGD VMGRVTRI+TRQAWVEI+CVGETVLREPH+G+VRKE
Sbjct: 1 MTEVVCPGKRLGRASEYRAGPGTYVRGTYIYASVVGPKLEQAAADEDGKPYLIVSQPKRARAADQVIQVGDTVMGRVTRISTRQAWVEIICVGETVLREPHRGIVRKE 108
BLAST of mRNA_H-paniculata_contig24061.6513.1 vs. uniprot
Match: A0A835YI70_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YI70_9STRA) HSP 1 Score: 127 bits (319), Expect = 7.120e-35 Identity = 60/104 (57.69%), Postives = 76/104 (73.08%), Query Frame = 1
Query: 4 TEIVCPGKRLGRVSQFRAGPGTYERGMYIFASVVGPKVEQRAEDGGKPFLIVTKRARAADQVIEVGDVVMGRVTRITTRQAWVEIMCVGETVLREPHKGVVRKE 315
T++ CPG RLGR S+F +GPGTY RG +IFAS+VGP ++Q +GG P + V A DQVIEVGDVVM RVTR+ A VEI+C GETVLRE + G+++KE
Sbjct: 4 TQLACPGDRLGRASEFTSGPGTYTRGPHIFASLVGPVLQQEGAEGGLPVITVRGGRNAQDQVIEVGDVVMARVTRVRALLASVEILCAGETVLREAYNGIIKKE 107
BLAST of mRNA_H-paniculata_contig24061.6513.1 vs. uniprot
Match: H6WBA8_VAULI (S1 motif domain-containing protein n=1 Tax=Vaucheria litorea TaxID=109269 RepID=H6WBA8_VAULI) HSP 1 Score: 92.0 bits (227), Expect = 4.940e-21 Identity = 46/105 (43.81%), Postives = 69/105 (65.71%), Query Frame = 1
Query: 1 MTEIVCPGKRLGRVSQFRAGPGTYERGMYIFASVVGPKVEQRAEDGGKPFLIVTKRARAADQVIEVGDVVMGRVTRITTRQAWVEIMCVGETVLREPHKGVVRKE 315
M+ VCPG R+GR ++ +G GTY RG +I++S+VG ++++ P L V + Q++EVG VVMGRVTR+ A V+I+C G+ VLRE +G++RKE
Sbjct: 1 MSTTVCPGDRIGRCDEYTSGNGTYVRGPHIYSSLVG-RIQKIEVPENLPVLTVKGKKAVVGQILEVGVVVMGRVTRVKNNLASVDILCAGKFVLREICQGIIRKE 104
BLAST of mRNA_H-paniculata_contig24061.6513.1 vs. uniprot
Match: W7U6U4_9STRA (3-5 exoribonuclease csl4 n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7U6U4_9STRA) HSP 1 Score: 85.5 bits (210), Expect = 3.050e-18 Identity = 46/110 (41.82%), Postives = 72/110 (65.45%), Query Frame = 1
Query: 10 IVCPGKRLGRVSQFRAGPGTYERGMYIFASVVGP-KVEQRAEDGGKPFLIVTK-------RARAADQVIEVGDVVMGRVTRITTRQAWVEIMCVGETVLREPHKGVVRKE 315
I PG R+GR+S ++GPGTY +G +I+AS++G ++ Q ++G P L V+ A A + V+ VG VV RV RIT++QA+VEI+ +G VLR+ +G+++KE
Sbjct: 14 IAAPGDRIGRISSHQSGPGTYIKGGHIYASILGNIQILQPEKEGDLPMLRVSNPYKADADHAGAQNVVLAVGHVVTTRVLRITSKQAYVEILALGSVVLRQTCQGIIKKE 123
BLAST of mRNA_H-paniculata_contig24061.6513.1 vs. uniprot
Match: A0A397V822_9GLOM (S1 motif domain-containing protein n=2 Tax=Gigaspora TaxID=4873 RepID=A0A397V822_9GLOM) HSP 1 Score: 81.3 bits (199), Expect = 8.280e-17 Identity = 40/105 (38.10%), Postives = 62/105 (59.05%), Query Frame = 1
Query: 1 MTEIVCPGKRLGRVSQFRAGPGTYERGMYIFASVVGPKVEQRAEDGGKPFLIVTKRARAADQVIEVGDVVMGRVTRITTRQAWVEIMCVGETVLREPHKGVVRKE 315
+T+ V PG+RL AGPG YERG Y++ASVVG E G+P ++ R + V +VG ++ G+V R+TT++A V IM VG ++ +G++R +
Sbjct: 4 LTKYVTPGRRLCFSEGVTAGPGVYERGEYLYASVVGVVQELAPTTEGEPRVVTVTREKVHSAVPDVGSIITGKVIRMTTKEAVVSIMVVGNMPCKDDFQGIIRSQ 108
BLAST of mRNA_H-paniculata_contig24061.6513.1 vs. uniprot
Match: A0A087SJQ6_AUXPR (Exosome complex component CSL4 n=1 Tax=Auxenochlorella protothecoides TaxID=3075 RepID=A0A087SJQ6_AUXPR) HSP 1 Score: 76.6 bits (187), Expect = 4.350e-15 Identity = 48/107 (44.86%), Postives = 64/107 (59.81%), Query Frame = 1
Query: 1 MTEIVCPGKRLGRVSQFRAGPGTYERGMYIFASVVGPK----VEQRAEDGGKPFLIVTKRARAADQVIEVGDVVMGRVTRITTRQAWVEIMCVGETVLREPHKGVVR 309
MTE PG+RLG V++F G GTY G ++ AS+VG + VE+ A D P L V++ R D V GDVV R+TR+T R A +I+CVGE + + GVVR
Sbjct: 1 MTETCTPGQRLGLVTEFEPGAGTYVAGSFVCASLVGIQRTVPVEETA-DKRLPRLEVSRSTRP-DPVPSPGDVVTARITRLTPRLALADILCVGEHPCAQRYSGVVR 105
BLAST of mRNA_H-paniculata_contig24061.6513.1 vs. uniprot
Match: A0A1S8VWT9_9FUNG (S1 motif domain-containing protein n=2 Tax=Batrachochytrium salamandrivorans TaxID=1357716 RepID=A0A1S8VWT9_9FUNG) HSP 1 Score: 76.6 bits (187), Expect = 4.890e-15 Identity = 46/101 (45.54%), Postives = 62/101 (61.39%), Query Frame = 1
Query: 13 VCPGKRLGRVSQFRAGPGTYERGMYIFASVVGPKVEQRAEDG--GKPFLIVTKRARAADQVIEVGDVVMGRVTRITTRQAWVEIMCVGETVLREPHKGVVR 309
V PG+ LG S+F A GTY RG +I ASV+G K + A DG P L V + +AA V E+G++++G+VTRI R A V IM V +T E +GV+R
Sbjct: 9 VFPGQCLGLSSEFTASTGTYSRGEFIHASVLGKK-QAGAADGLSSMPTLTVVRNKQAAAGVPEIGNIIIGKVTRINPRFASVSIMVVADTPCTETFQGVIR 108
BLAST of mRNA_H-paniculata_contig24061.6513.1 vs. uniprot
Match: A0A8K1CT14_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CT14_PYTOL) HSP 1 Score: 75.5 bits (184), Expect = 7.870e-15 Identity = 45/106 (42.45%), Postives = 65/106 (61.32%), Query Frame = 1
Query: 10 IVCPGKRLG-RVSQFRAGPGTYERGMYIFASVVGPKVEQRAEDGGKPFLIVTKRAR---AADQVIEVGDVVMGRVTRITTRQAWVEIMCVGETVLREPHKGVVRKE 315
IV PG+RL + + RAG GTY R ++ASV G +Q E + KRA + QV+ +GD+V+ +VT++TTRQ V+I+CVG+ VL+EP G +R E
Sbjct: 9 IVVPGQRLSAQEAGVRAGEGTYVRDGAVYASVTGRYAKQNNE-------MTVKRAGKLVGSSQVLRLGDLVICKVTKVTTRQVLVDIVCVGDAVLQEPFPGTIRLE 107
BLAST of mRNA_H-paniculata_contig24061.6513.1 vs. uniprot
Match: A0A397G0E9_9GLOM (S1 motif domain-containing protein n=1 Tax=Diversispora epigaea TaxID=1348612 RepID=A0A397G0E9_9GLOM) HSP 1 Score: 75.9 bits (185), Expect = 1.060e-14 Identity = 41/108 (37.96%), Postives = 64/108 (59.26%), Query Frame = 1
Query: 13 VCPGKRLGRVSQFRAGPGTYERGMYIFASVVG------PKVEQRAEDGGKPFLIVT-KRARAADQVIEVGDVVMGRVTRITTRQAWVEIMCVGETVLREPHKGVVRKE 315
V PG RL S++ AGPGTYER YI++SVVG P V + K I+T + + + +VG+++ G+V R+TTR+A V IM VG ++ ++G++R +
Sbjct: 4 VTPGTRLCFASEYEAGPGTYEREEYIYSSVVGIVQEFIPTVSTNTGEEKKQSKIITVSKEKHQSSIPDVGNIITGKVIRMTTREAVVSIMVVGNIPCKDDYQGIIRSQ 111
BLAST of mRNA_H-paniculata_contig24061.6513.1 vs. uniprot
Match: A0A7S2GDT7_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2GDT7_9STRA) HSP 1 Score: 75.5 bits (184), Expect = 1.700e-14 Identity = 44/104 (42.31%), Postives = 60/104 (57.69%), Query Frame = 1
Query: 13 VCPGKRLGRVSQFRAGPGTYERGMYIFASVVGP-KVEQRAEDGGKPFLIVTKRARAAD--QVIEVGDVVMGRVTRITTRQAWVEIMCVGETVLREPHKGVVRKE 315
V PG+ + G GTYER IFA++ G KVE+ G KP + V + + QV VG V+MGRVTRIT A V+I C+G+ +LR+P G++R E
Sbjct: 15 VVPGEHIIESQMVVTGNGTYERDGQIFAALAGKVKVEEPETGGNKPMVTVGHWLQKDNTKQVPRVGQVIMGRVTRITANTAQVDITCLGDNILRQPCSGMIRTE 118 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig24061.6513.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig24061.6513.1 >prot_H-paniculata_contig24061.6513.1 ID=prot_H-paniculata_contig24061.6513.1|Name=mRNA_H-paniculata_contig24061.6513.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=111bp MTEIVCPGKRLGRVSQFRAGPGTYERGMYIFASVVGPKVEQRAEDGGKPFback to top mRNA from alignment at H-paniculata_contig24061:435..1350- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig24061.6513.1 ID=mRNA_H-paniculata_contig24061.6513.1|Name=mRNA_H-paniculata_contig24061.6513.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=916bp|location=Sequence derived from alignment at H-paniculata_contig24061:435..1350- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig24061:435..1350- >mRNA_H-paniculata_contig24061.6513.1 ID=mRNA_H-paniculata_contig24061.6513.1|Name=mRNA_H-paniculata_contig24061.6513.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=666bp|location=Sequence derived from alignment at H-paniculata_contig24061:435..1350- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |