prot_H-paniculata_contig23466.6336.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig23466.6336.1
Unique Nameprot_H-paniculata_contig23466.6336.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length208
Homology
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BLAST of mRNA_H-paniculata_contig23466.6336.1 vs. uniprot
Match: D7FHI0_ECTSI (LisH domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHI0_ECTSI)

HSP 1 Score: 55.8 bits (133), Expect = 1.440e-5
Identity = 27/36 (75.00%), Postives = 31/36 (86.11%), Query Frame = 0 
Query:  169 RPPGRPAWQCKPLAVDETSHALHIAAVKG-GGVGSG 203
            R PGRPAWQCKPLAVD+ SHA ++AAVKG GG+G G
Sbjct:  726 RAPGRPAWQCKPLAVDDASHAANVAAVKGQGGLGGG 761
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig23466.6336.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FHI0_ECTSI1.440e-575.00LisH domain-containing protein n=1 Tax=Ectocarpus ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig23466contigH-paniculata_contig23466:661..2503 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig23466.6336.1mRNA_H-paniculata_contig23466.6336.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig23466 661..2504 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig23466.6336.1 ID=prot_H-paniculata_contig23466.6336.1|Name=mRNA_H-paniculata_contig23466.6336.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=208bp
GGVGGHVQEARGIGEVHSGEGSVVAAAPPGRAPVASAAPAAESTSSTEIL
SIVPSAVTPAATAATAITRAASPASTIEQPTTQPHRPLALKSTMKKNSRA
STASTASTSTASTSTSTSTSTSAGLLETTASKPQLSERAEQPHPGLSTGD
ATSASPSRGDASGLLPAPRPPGRPAWQCKPLAVDETSHALHIAAVKGGGV
GSGAGVGG
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