mRNA_H-paniculata_contig23466.6336.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig23466.6336.1
Unique NamemRNA_H-paniculata_contig23466.6336.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig23466.6336.1 vs. uniprot
Match: D7FHI0_ECTSI (LisH domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHI0_ECTSI)

HSP 1 Score: 55.8 bits (133), Expect = 1.440e-5
Identity = 27/36 (75.00%), Postives = 31/36 (86.11%), Query Frame = 1 
Query:  505 RPPGRPAWQCKPLAVDETSHALHIAAVKG-GGVGSG 609
            R PGRPAWQCKPLAVD+ SHA ++AAVKG GG+G G
Sbjct:  726 RAPGRPAWQCKPLAVDDASHAANVAAVKGQGGLGGG 761
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig23466.6336.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FHI0_ECTSI1.440e-575.00LisH domain-containing protein n=1 Tax=Ectocarpus ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig23466contigH-paniculata_contig23466:661..2504 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size626
Cds size624
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929666.156107-CDS-H-paniculata_contig23466:660..7471622929666.156107-CDS-H-paniculata_contig23466:660..747Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig23466 661..747 +
1691480958.239852-CDS-H-paniculata_contig23466:660..7471691480958.239852-CDS-H-paniculata_contig23466:660..747Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig23466 661..747 +
1622929666.1738672-CDS-H-paniculata_contig23466:1966..25031622929666.1738672-CDS-H-paniculata_contig23466:1966..2503Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig23466 1967..2503 +
1691480958.2480311-CDS-H-paniculata_contig23466:1966..25031691480958.2480311-CDS-H-paniculata_contig23466:1966..2503Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig23466 1967..2503 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig23466.6336.1prot_H-paniculata_contig23466.6336.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig23466 661..2503 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig23466.6336.1

>prot_H-paniculata_contig23466.6336.1 ID=prot_H-paniculata_contig23466.6336.1|Name=mRNA_H-paniculata_contig23466.6336.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=208bp
GGVGGHVQEARGIGEVHSGEGSVVAAAPPGRAPVASAAPAAESTSSTEIL
SIVPSAVTPAATAATAITRAASPASTIEQPTTQPHRPLALKSTMKKNSRA
STASTASTSTASTSTSTSTSTSAGLLETTASKPQLSERAEQPHPGLSTGD
ATSASPSRGDASGLLPAPRPPGRPAWQCKPLAVDETSHALHIAAVKGGGV
GSGAGVGG
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mRNA from alignment at H-paniculata_contig23466:661..2504+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig23466.6336.1 ID=mRNA_H-paniculata_contig23466.6336.1|Name=mRNA_H-paniculata_contig23466.6336.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1844bp|location=Sequence derived from alignment at H-paniculata_contig23466:661..2504+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGTGGTGTGGGCGGACACGTGCAAGAAGCTCGGGGGATCGGAGAAGTGCA
CAGTGGAGAGGGGTCAGTGGTGGCGGCGGCGCCTCCGGTGCGTGTGTTGG
TTGTTTTCCAGATGTCCTCATGTGTCTGATTGAGTGTTGGTATTGTTTTG
CGCGCTCTGGTTCTTCTGCCCTACCTTTCTGTTTCTCTCTATCTCTCTAT
CTCTCTCTCTCTCTCTCGCTATCTCCATCTCTTCCGCCAAAGTGGTGGCT
AGCGGTCCGGTCCGCGTCTGAGCAATCACCGCTGTTGGTTGGTGTTGGAG
GGATCCATTTTCGTTGTACTGTTCATCCTAGTTCATACCGCGCATGAGTG
TTTGTGCGAGAATATGTGCCCCGAGGCATTATTTTCACTGTCGCGGCCCT
GTCCGTACCTGGAGTTCGCAGTGCACTCAGAGCTCTGACACGAAGGCCTC
GTCCGATCCACCGAAAAGCCTATATTGATAGTTGAATTTTTCGTTTCCCT
CCAGACTGCCCTAAACCTTCTGAGAGCCTCTAGCATGACTTCATGTTCGC
CTTAATCTAATCACCCCCCCTCCCCCCCCCGTTTTCTCTAGTTTGACGTT
CAAGTCTCGCTGATAAGTATATCTAACCCAGCTTCTATTTGTAAAGGAAG
CGACTTTACCATGTAGATATAGATTGCGGCGCAGCTAGAAATAGATGGAA
GTATTTTTGTATCGTAGTCGGCGAGGGGCGGACCACGAGTGAGATACAGA
TACATCCATGTGGTAGCTATGCTGTTGGAGCTGCTCATCGGGCATGGCGT
CTATGCTCGTCATATATTTATGCAAGTGATGTAGTCTTGCGTCCTTGTAG
GTACAGTAAGTTATGCTGGTGTTCTCGTTCGAAGCCACTCCCTCCCCCTA
GTCGATATATTTCTTGCTGATAACTATATATTGCAAATGGATTTTGTTGA
ATCCAGGTATATAATATCAACGGTTGGCACAAGGGACATAATACATGAGA
TTCAGATATTCAGTTGAACTGACTGTGGCAGGGTGGTTTTACTAGAGTAG
TGAGAATTTTAGTTACGAGGGTTGTTGTCATTTTCCATGGTTTCAGTTGT
TTGTATGAGGACTATTTCATGCTTCACTTACGGTACACGATGCGAGTGAT
ACAGTGGTGCTCCCTTGTAAAGGTTAAAGGTTGCCCTAGCTCATGTCGTG
CGTGGTCGAACAAGCGCGATAAGTTTTAACCCCCCGTTAAACTCACGGGT
GGATTCCTTCCTCATCGATGTTTTTTCGACCGGTGACCGTCACCTTGGGT
GAACAGGGGAGGGCACCGGTGGCATCGGCAGCGCCGGCAGCAGAATCAAC
AAGTTCGACGGAGATATTGTCGATCGTCCCGAGCGCCGTAACGCCAGCAG
CTACAGCAGCTACAGCAATAACAAGGGCAGCCTCGCCGGCCTCTACGATA
GAGCAGCCAACAACACAACCGCATCGACCACTTGCGCTGAAGTCCACCAT
GAAAAAAAACTCTCGCGCATCGACGGCATCAACAGCATCAACATCGACAG
CATCAACATCAACGTCAACGTCAACATCAACATCAGCAGGATTGTTGGAA
ACGACGGCAAGCAAACCTCAACTTTCCGAAAGAGCAGAACAACCGCATCC
CGGATTATCCACCGGGGATGCAACCTCCGCATCTCCTTCTCGCGGGGATG
CATCAGGCCTGCTCCCTGCCCCCCGACCTCCCGGCCGCCCCGCGTGGCAG
TGCAAACCTCTTGCCGTAGATGAAACCAGCCACGCGTTGCACATCGCCGC
TGTTAAGGGCGGGGGGGTAGGCAGTGGTGCTGGGGTGGGCGGGG
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Coding sequence (CDS) from alignment at H-paniculata_contig23466:661..2504+

>mRNA_H-paniculata_contig23466.6336.1 ID=mRNA_H-paniculata_contig23466.6336.1|Name=mRNA_H-paniculata_contig23466.6336.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1248bp|location=Sequence derived from alignment at H-paniculata_contig23466:661..2504+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGTGGTGTGGGCGGACACGTGCAAGAAGCTCGGGGGATCGGAGAAGTGCA
CAGTGGAGAGGGGTCAGTGGTGGCGGCGGCGCCTCCGGGTGGTGTGGGCG
GACACGTGCAAGAAGCTCGGGGGATCGGAGAAGTGCACAGTGGAGAGGGG
TCAGTGGTGGCGGCGGCGCCTCCGGGGAGGGCACCGGTGGCATCGGCAGC
GCCGGCAGCAGAATCAACAAGTTCGACGGAGATATTGTCGATCGTCCCGA
GCGCCGTAACGCCAGCAGCTACAGCAGCTACAGCAATAACAAGGGCAGCC
TCGCCGGCCTCTACGATAGAGCAGCCAACAACACAACCGCATCGACCACT
TGCGCTGAAGTCCACCATGAAAAAAAACTCTCGCGCATCGACGGCATCAA
CAGCATCAACATCGACAGCATCAACATCAACGTCAACGTCAACATCAACA
TCAGCAGGATTGTTGGAAACGACGGCAAGCAAACCTCAACTTTCCGAAAG
AGCAGAACAACCGCATCCCGGATTATCCACCGGGGATGCAACCTCCGCAT
CTCCTTCTCGCGGGGATGCATCAGGCCTGCTCCCTGCCCCCCGACCTCCC
GGCCGCCCCGCGTGGCAGTGCAAACCTCTTGCCGTAGATGAAACCAGCCA
CGCGTTGCACATCGCCGCTGTTAAGGGCGGGGGGGTAGGCAGTGGTGCTG
GGGTGGGCGGGGGGAGGGCACCGGTGGCATCGGCAGCGCCGGCAGCAGAA
TCAACAAGTTCGACGGAGATATTGTCGATCGTCCCGAGCGCCGTAACGCC
AGCAGCTACAGCAGCTACAGCAATAACAAGGGCAGCCTCGCCGGCCTCTA
CGATAGAGCAGCCAACAACACAACCGCATCGACCACTTGCGCTGAAGTCC
ACCATGAAAAAAAACTCTCGCGCATCGACGGCATCAACAGCATCAACATC
GACAGCATCAACATCAACGTCAACGTCAACATCAACATCAGCAGGATTGT
TGGAAACGACGGCAAGCAAACCTCAACTTTCCGAAAGAGCAGAACAACCG
CATCCCGGATTATCCACCGGGGATGCAACCTCCGCATCTCCTTCTCGCGG
GGATGCATCAGGCCTGCTCCCTGCCCCCCGACCTCCCGGCCGCCCCGCGT
GGCAGTGCAAACCTCTTGCCGTAGATGAAACCAGCCACGCGTTGCACATC
GCCGCTGTTAAGGGCGGGGGGGTAGGCAGTGGTGCTGGGGTGGGCGGG
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