prot_H-paniculata_contig2292.6132.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig2292.6132.1
Unique Nameprot_H-paniculata_contig2292.6132.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length368
Homology
[Close]
BLAST of mRNA_H-paniculata_contig2292.6132.1 vs. uniprot
Match: D7G5K5_ECTSI (Bromo domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5K5_ECTSI)

HSP 1 Score: 185 bits (470), Expect = 3.200e-48
Identity = 105/200 (52.50%), Postives = 137/200 (68.50%), Query Frame = 0 
Query:  125 DVDELERQGTGLDAAVLRSLRARFEKWREENTKRVEEENMARIKAQAVSETSSAK-----ASVLPAEPEPPAPEPIPVSKYGHSNIRRFLAHITPAEMCPEWVASLLVASRVPTKNGPEVKKAIQDAIEASKDKGTPKIAMEAMERSIKDDVFKAANARLTKEIALGAVVDHLLDNVDDVVGLELGPRDEPLLPGTLIPM 319
            D ++   +  G DAAV+R+++ R E+WR++NTK VE+EN+ARI    V+    ++     +SVL  +   P+      SKYG  NIRRFLAH+    + P WVA+LL A RVPTKN  +VKK IQ+AIE +K   TPK  +EAM RSI  D++K+  AR TK+IAL A+VDHL+DN  DVVGLELGP DEPLLPGTL+PM
Sbjct:  544 DEEDTPERNPGPDAAVVRAIKLRLEQWRKDNTKSVEQENLARIARYGVAGGGDSRFGGQLSSVLGLQM--PSAAAGTASKYGAQNIRRFLAHVHAISIAPPWVAALLTAMRVPTKNAVQVKKVIQEAIEVNKGLSTPKPVLEAMARSISPDIYKSFTARYTKDIALEALVDHLIDNPSDVVGLELGPGDEPLLPGTLLPM 741
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig2292.6132.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G5K5_ECTSI3.200e-4852.50Bromo domain-containing protein n=1 Tax=Ectocarpus... [more]
back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 3..14
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 19..368
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..18
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..2
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 15..18

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig2292contigH-paniculata_contig2292:13671..17238 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig2292.6132.1mRNA_H-paniculata_contig2292.6132.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig2292 13671..17239 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig2292.6132.1 ID=prot_H-paniculata_contig2292.6132.1|Name=mRNA_H-paniculata_contig2292.6132.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=368bp
VGVGAGGAAAAAAVSSSAKNPPGSPTGQRKKKRESTTPSTTTAVAAAEAD
SGGDTAGASRGMNQEPARARGGTSTRVAAHAASAAITATAKDRWDPQKVL
EQGEREATAAAGAGAGKKETSEEEDVDELERQGTGLDAAVLRSLRARFEK
WREENTKRVEEENMARIKAQAVSETSSAKASVLPAEPEPPAPEPIPVSKY
GHSNIRRFLAHITPAEMCPEWVASLLVASRVPTKNGPEVKKAIQDAIEAS
KDKGTPKIAMEAMERSIKDDVFKAANARLTKEIALGAVVDHLLDNVDDVV
GLELGPRDEPLLPGTLIPMRGVRPAEEAPPAASASGSATGGGKDGGGGGG
GKGGSGSSTGKEATERKE
back to top