mRNA_H-paniculata_contig2292.6132.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig2292.6132.1
Unique NamemRNA_H-paniculata_contig2292.6132.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig2292.6132.1 vs. uniprot
Match: D7G5K5_ECTSI (Bromo domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5K5_ECTSI)

HSP 1 Score: 185 bits (470), Expect = 3.200e-48
Identity = 105/200 (52.50%), Postives = 137/200 (68.50%), Query Frame = 1 
Query:  373 DVDELERQGTGLDAAVLRSLRARFEKWREENTKRVEEENMARIKAQAVSETSSAK-----ASVLPAEPEPPAPEPIPVSKYGHSNIRRFLAHITPAEMCPEWVASLLVASRVPTKNGPEVKKAIQDAIEASKDKGTPKIAMEAMERSIKDDVFKAANARLTKEIALGAVVDHLLDNVDDVVGLELGPRDEPLLPGTLIPM 957
            D ++   +  G DAAV+R+++ R E+WR++NTK VE+EN+ARI    V+    ++     +SVL  +   P+      SKYG  NIRRFLAH+    + P WVA+LL A RVPTKN  +VKK IQ+AIE +K   TPK  +EAM RSI  D++K+  AR TK+IAL A+VDHL+DN  DVVGLELGP DEPLLPGTL+PM
Sbjct:  544 DEEDTPERNPGPDAAVVRAIKLRLEQWRKDNTKSVEQENLARIARYGVAGGGDSRFGGQLSSVLGLQM--PSAAAGTASKYGAQNIRRFLAHVHAISIAPPWVAALLTAMRVPTKNAVQVKKVIQEAIEVNKGLSTPKPVLEAMARSISPDIYKSFTARYTKDIALEALVDHLIDNPSDVVGLELGPGDEPLLPGTLLPM 741
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig2292.6132.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G5K5_ECTSI3.200e-4852.50Bromo domain-containing protein n=1 Tax=Ectocarpus... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig2292contigH-paniculata_contig2292:13671..17239 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons5
Model size1105
Cds size1104
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig2292.6132.1prot_H-paniculata_contig2292.6132.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig2292 13671..17238 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929640.672415-CDS-H-paniculata_contig2292:13670..141531622929640.672415-CDS-H-paniculata_contig2292:13670..14153Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2292 13671..14153 +
1691480947.299357-CDS-H-paniculata_contig2292:13670..141531691480947.299357-CDS-H-paniculata_contig2292:13670..14153Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2292 13671..14153 +
1622929640.6852105-CDS-H-paniculata_contig2292:14685..148221622929640.6852105-CDS-H-paniculata_contig2292:14685..14822Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2292 14686..14822 +
1691480947.3091352-CDS-H-paniculata_contig2292:14685..148221691480947.3091352-CDS-H-paniculata_contig2292:14685..14822Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2292 14686..14822 +
1622929640.6982496-CDS-H-paniculata_contig2292:15455..155671622929640.6982496-CDS-H-paniculata_contig2292:15455..15567Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2292 15456..15567 +
1691480947.31852-CDS-H-paniculata_contig2292:15455..155671691480947.31852-CDS-H-paniculata_contig2292:15455..15567Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2292 15456..15567 +
1622929640.7147627-CDS-H-paniculata_contig2292:15867..159931622929640.7147627-CDS-H-paniculata_contig2292:15867..15993Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2292 15868..15993 +
1691480947.3279188-CDS-H-paniculata_contig2292:15867..159931691480947.3279188-CDS-H-paniculata_contig2292:15867..15993Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2292 15868..15993 +
1622929640.7305074-CDS-H-paniculata_contig2292:16992..172381622929640.7305074-CDS-H-paniculata_contig2292:16992..17238Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2292 16993..17238 +
1691480947.346914-CDS-H-paniculata_contig2292:16992..172381691480947.346914-CDS-H-paniculata_contig2292:16992..17238Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2292 16993..17238 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig2292.6132.1

>prot_H-paniculata_contig2292.6132.1 ID=prot_H-paniculata_contig2292.6132.1|Name=mRNA_H-paniculata_contig2292.6132.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=368bp
VGVGAGGAAAAAAVSSSAKNPPGSPTGQRKKKRESTTPSTTTAVAAAEAD
SGGDTAGASRGMNQEPARARGGTSTRVAAHAASAAITATAKDRWDPQKVL
EQGEREATAAAGAGAGKKETSEEEDVDELERQGTGLDAAVLRSLRARFEK
WREENTKRVEEENMARIKAQAVSETSSAKASVLPAEPEPPAPEPIPVSKY
GHSNIRRFLAHITPAEMCPEWVASLLVASRVPTKNGPEVKKAIQDAIEAS
KDKGTPKIAMEAMERSIKDDVFKAANARLTKEIALGAVVDHLLDNVDDVV
GLELGPRDEPLLPGTLIPMRGVRPAEEAPPAASASGSATGGGKDGGGGGG
GKGGSGSSTGKEATERKE
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mRNA from alignment at H-paniculata_contig2292:13671..17239+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig2292.6132.1 ID=mRNA_H-paniculata_contig2292.6132.1|Name=mRNA_H-paniculata_contig2292.6132.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=3569bp|location=Sequence derived from alignment at H-paniculata_contig2292:13671..17239+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTTGGTGTCGGTGCAGGGGGTGCCGCAGCCGCGGCAGCAGTCAGCTCTTC
TGCTAAGAACCCGCCTGGGTCGCCCACCGGGCAGAGGAAGAAAAAAAGGG
AGTCCACCACTCCCTCTACCACCACAGCAGTAGCCGCGGCAGAAGCAGAC
TCAGGAGGAGACACGGCCGGAGCATCTCGAGGAATGAATCAGGAGCCGGC
GAGAGCTCGGGGGGGGACGTCCACGCGAGTGGCCGCGCACGCGGCGTCGG
CGGCCATCACGGCGACGGCCAAGGACAGGTGGGATCCGCAGAAAGTTTTG
GAGCAAGGAGAGAGAGAGGCGACCGCGGCTGCTGGGGCAGGGGCGGGTAA
GAAAGAGACGTCAGAGGAGGAAGACGTTGACGAACTGGAGCGGCAGGGGA
CGGGGCTGGATGCCGCTGTGCTACGCTCGCTGCGCGCGCGGTTTGAGAAG
TGGCGGGAGGAGAACACTAAGCGTGTGGAAGAGGTATGTGTGTATGAGGG
GATGTTAGTTATCGTTCACGGTGTTTGGGGGGTGTTGTGGGTGTTGTGCG
CGTTTGTGTTGTCTGGTCTACTTTCTGTGTCATATTCCACGGTGTCTAGT
GTTTTGTGATGTCTGGTGGCTATGTTTGTTTTTCTCCATTTTTCTTTTTG
TCTGCGTGTTTGTTTGTCCTTTCTTCTTTTTGTCAGTATTTTGGGTATGT
CTGGGTGCTGATCGTTCCCCCACCCTCGCCTTCATCTTGTTGCACAAAAC
ACCACAGCAACGGCTCGCGCCCTGACGTCTCCTTATAAATTATGCCCCCT
ACATTGAGGTAACTTTTGGCGATAGGTGTTGACAATTGAAGTGTAAAAAG
ATAGCTAGATAATCTCAACAAGGGTACCGTGGAGTGACTACATGAGTTTC
AGAGCTATCGTTCAACTGACTGTGTCAGGGTTGACGTTACGAGTGACAAT
TCAAATCGACCAAATGGAGCTTTTTTAACCTCTCCCTCACCCCCCCCCCC
CGCCGTCCTCCCCAGGAAAACATGGCCAGGATAAAGGCGCAAGCTGTTTC
TGAAACTTCGAGTGCCAAGGCCAGCGTGTTGCCCGCGGAACCAGAACCCC
CAGCCCCGGAACCGATTCCGGTATCCAAGTATGGTCACTCAAACATCAGA
AGGTATGTAATACATGGGCGTGAGGTTACGTGTAGGCACTGTGTGTGCGT
GCGTAGCTCTGGGCCGACGACAGTACATGAGCTGTGATCGAAGATATGAA
AGATTTGAGAGTTGTGGCACATGTGCTGACTGACTAGCTGACTCTGTTTC
TACCAAATGGTAGTCTTCCAACGTCACACTCGAGACACTTGGTAGTTGGG
GGGGGGGGGGGGGAGAACATGCATGTTGTCATATTCCAAAAAAACATTCT
GCCCTCGAAAAAATCCGTTTATTTTTGTGCTAGTTTTGAATTCACGGCCC
GTGAACTCGCTGCAATCGCATGAAGATTCGTTTTTCAAGAGTTATTGAGG
AATATTAAAAAGTTGAAAATATACATCGGGAATGACGGCGATAATGAATG
ACGATGACGACGATCTTATAGTGTGAAATATGAAGTATTTGTTTCCGTAC
TTCCATATGTGCATCACTGGAATCCGACAGAAAAGTTGTTGGTTCCATAT
TCGGCAGTAAGTGTAAGTGTTTTGTGCCATGAATGGGATTGTCTACCTCC
TTGATGAATTGACGTGTTTAGTTGAGTCAGGTTTTTCTTTTTGGCCTTGA
AGTTTGTGCTGCGAATCTTCGTTTGCTCGGTTCAGGTTCTTAGCGCACAT
AACGCCCGCGGAGATGTGCCCGGAGTGGGTGGCCTCGTTGCTCGTGGCCA
GCCGCGTACCCACTAAGAACGGTCCTGAGGTGAAAAAGGCGATCCAGGTG
CGCAACAAAAGGGTATAGTAGCGAATCGATGATAATAGGAAGATCTGTTT
TCGGGTGGGGGGCTGACACAAAACGCTAGGGTTGGTGAGGATCGTCAACA
GTATTTTAGTTTTTACTTGATTATTAGTTTCTGTGACTGCGAATTTTGGC
TCAACGAGTAAATCCACAATCGATCCCTATGATGTCTACGGATTGTTGCG
AGTTTTCGTCAGAGACTGGATTTGTCCGAGAGCCGGATTGCGCGGATTGT
CATTCATCCGTATGTATCTACTTTTTTTCTTTTTTTTCTTGGTTCAGGAT
GCGATCGAGGCAAGCAAAGACAAGGGCACCCCTAAGATTGCAATGGAAGC
CATGGAGAGATCTATAAAGGATGACGTTTTTAAGGCCGCCAATGCTCGGC
TCACGAAGGAGATCGCCTTAGGGGTGCGTGAGGCAGGAGCTACAGAATTT
AGTCCCATATCGTATGTCGACATGTCAGTTTATGTTGTGAGGGACGATAT
GCGTTCGTATTCAGAATGTTTTCTCGTAGAGCGTCGAATGCAAATGGGCG
TGTTGATGTACGTAGTTCTGGTTTTCATGCCCCCGACTTCGTGCGTCGTC
GTAAGCCGTAATTTGACGTCATTTTCATATGTATGTAGTTACTTGCCTGT
TTGCTGTATCTGCCGTCCACTTGTCTTGCAGTTCATCTGGAGCGTAAGAA
AAAGAGCACGAGGAATAGTTTTCATATTAAGCGAGAATTGCGTTTTTTTT
TTGTATTGGAAACAGCCGATCTTACGTATAGTCATGTGCACCATGACGCC
CCGATGATCCCTCACTGGCCTTCGCTCATATCATGTATATTTTGCACGAC
CTCAACGGCATCGACACCATCACTTGTGTTCCATAGTGCCCCCCCGGCAG
TTGATCTCGTGCTCTTGAGCGTCGTATGTGTTCACTTGTGTTCCATAGTG
CCCCCCCGGCAATTGATCTCGTGCTCTTTAGTGTCGTACAAGCCAAGTTC
TACGTGATAGTGATACGTTTTGAACACCCGGTATTTTTGCGACCATGGCA
TCCGATGACCACGTCCCCAAACGCGCGGATATTTGAAGAAGATGGAGCCA
TCCACGAATCTTCAGGCGTCTTGCACAGGTTTCCCCCCCGCGTCTTATGC
GCTTATGCCGACGTGCGAGGACTCAGGTTTAACATGAGGAACTCATGGGT
TATAGTGTCTTGAGCGGTACAATGCCTCGCTCGGGAGCTATAGCTTAAGT
TGGGGTGTTGGCTTCAGGGTTAATTTCTTGGTTTATCTTTATGTCGGTAT
CGATCTCACCCACCGGAAAATGAACACATGAGGTCATCATTATTTTTATT
TCTTTATTTTGCTATTCATTCAATTAGTAAAACCATACCCACCAACCACC
GCCACCACCATCCCAACAATAGGCCGTGGTGGACCACCTGCTAGACAATG
TAGACGACGTTGTCGGCCTAGAGCTCGGCCCGAGGGACGAGCCGCTGTTG
CCCGGGACGCTCATACCCATGCGGGGCGTCCGTCCCGCCGAGGAAGCGCC
GCCGGCTGCCTCGGCTTCGGGGTCCGCAACGGGCGGGGGGAAGGATGGCG
GCGGCGGCGGCGGCGGCAAGGGAGGGTCTGGATCTTCGACGGGCAAGGAG
GCGACTGAGCGGAAGGAAG
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Coding sequence (CDS) from alignment at H-paniculata_contig2292:13671..17239+

>mRNA_H-paniculata_contig2292.6132.1 ID=mRNA_H-paniculata_contig2292.6132.1|Name=mRNA_H-paniculata_contig2292.6132.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=2208bp|location=Sequence derived from alignment at H-paniculata_contig2292:13671..17239+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTTGGTGTCGGTGCAGGGGGTGCCGCAGCCGCGGCAGCAGTCAGCTCTTC
TGCTAAGAACCCGCCTGGGTCGCCCACCGGGCAGAGGAAGAAAAAAAGGG
AGTCCACCACTCCCTCTACCACCACAGCAGTAGCCGCGGCAGAAGCAGAC
TCAGGAGGAGACACGGCCGGAGCATCTCGAGGAATGAATCAGGAGCCGGC
GAGAGCTCGGGGGGGGACGTCCACGCGAGTGGCCGCGCACGCGGCGTCGG
CGGCCATCACGGCGACGGCCAAGGACAGGTGGGATCCGCAGAAAGTTTTG
GAGCAAGGAGAGAGAGAGGCGACCGCGGCTGCTGGGGCAGGGGCGGGTAA
GAAAGAGACGTCAGAGGAGGAAGACGTTGACGAACTGGAGCGGCAGGGGA
CGGGGCTGGATGCCGCTGTGCTACGCTCGCTGCGCGCGCGGTTTGAGAAG
TGGCGGGAGGAGAACACTAAGCGTGTGGAAGAGGTTGGTGTCGGTGCAGG
GGGTGCCGCAGCCGCGGCAGCAGTCAGCTCTTCTGCTAAGAACCCGCCTG
GGTCGCCCACCGGGCAGAGGAAGAAAAAAAGGGAGTCCACCACTCCCTCT
ACCACCACAGCAGTAGCCGCGGCAGAAGCAGACTCAGGAGGAGACACGGC
CGGAGCATCTCGAGGAATGAATCAGGAGCCGGCGAGAGCTCGGGGGGGGA
CGTCCACGCGAGTGGCCGCGCACGCGGCGTCGGCGGCCATCACGGCGACG
GCCAAGGACAGGTGGGATCCGCAGAAAGTTTTGGAGCAAGGAGAGAGAGA
GGCGACCGCGGCTGCTGGGGCAGGGGCGGGTAAGAAAGAGACGTCAGAGG
AGGAAGACGTTGACGAACTGGAGCGGCAGGGGACGGGGCTGGATGCCGCT
GTGCTACGCTCGCTGCGCGCGCGGTTTGAGAAGTGGCGGGAGGAGAACAC
TAAGCGTGTGGAAGAGGAAAACATGGCCAGGATAAAGGCGCAAGCTGTTT
CTGAAACTTCGAGTGCCAAGGCCAGCGTGTTGCCCGCGGAACCAGAACCC
CCAGCCCCGGAACCGATTCCGGTATCCAAGTATGGTCACTCAAACATCAG
AAGGAAAACATGGCCAGGATAAAGGCGCAAGCTGTTTCTGAAACTTCGAG
TGCCAAGGCCAGCGTGTTGCCCGCGGAACCAGAACCCCCAGCCCCGGAAC
CGATTCCGGTATCCAAGTATGGTCACTCAAACATCAGAAGGTTCTTAGCG
CACATAACGCCCGCGGAGATGTGCCCGGAGTGGGTGGCCTCGTTGCTCGT
GGCCAGCCGCGTACCCACTAAGAACGGTCCTGAGGTGAAAAAGGCGATCC
AGGTTCTTAGCGCACATAACGCCCGCGGAGATGTGCCCGGAGTGGGTGGC
CTCGTTGCTCGTGGCCAGCCGCGTACCCACTAAGAACGGTCCTGAGGTGA
AAAAGGCGATCCAGGATGCGATCGAGGCAAGCAAAGACAAGGGCACCCCT
AAGATTGCAATGGAAGCCATGGAGAGATCTATAAAGGATGACGTTTTTAA
GGCCGCCAATGCTCGGCTCACGAAGGAGATCGCCTTAGGGGATGCGATCG
AGGCAAGCAAAGACAAGGGCACCCCTAAGATTGCAATGGAAGCCATGGAG
AGATCTATAAAGGATGACGTTTTTAAGGCCGCCAATGCTCGGCTCACGAA
GGAGATCGCCTTAGGGGCCGTGGTGGACCACCTGCTAGACAATGTAGACG
ACGTTGTCGGCCTAGAGCTCGGCCCGAGGGACGAGCCGCTGTTGCCCGGG
ACGCTCATACCCATGCGGGGCGTCCGTCCCGCCGAGGAAGCGCCGCCGGC
TGCCTCGGCTTCGGGGTCCGCAACGGGCGGGGGGAAGGATGGCGGCGGCG
GCGGCGGCGGCAAGGGAGGGTCTGGATCTTCGACGGGCAAGGAGGCGACT
GAGCGGAAGGAAGCCGTGGTGGACCACCTGCTAGACAATGTAGACGACGT
TGTCGGCCTAGAGCTCGGCCCGAGGGACGAGCCGCTGTTGCCCGGGACGC
TCATACCCATGCGGGGCGTCCGTCCCGCCGAGGAAGCGCCGCCGGCTGCC
TCGGCTTCGGGGTCCGCAACGGGCGGGGGGAAGGATGGCGGCGGCGGCGG
CGGCGGCAAGGGAGGGTCTGGATCTTCGACGGGCAAGGAGGCGACTGAGC
GGAAGGAA
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