prot_H-paniculata_contig214.5629.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig214.5629.1
Unique Nameprot_H-paniculata_contig214.5629.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length221
Homology
BLAST of mRNA_H-paniculata_contig214.5629.1 vs. uniprot
Match: A0A6H5JDH5_9PHAE (RPA43_OB domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JDH5_9PHAE)

HSP 1 Score: 271 bits (693), Expect = 7.190e-89
Identity = 133/173 (76.88%), Postives = 154/173 (89.02%), Query Frame = 0
Query:    1 MATSPFEELDLEVCISLLPSDIGDIYAGIRRHIYRYLMKYNEAVGGVLLAVSSLSFADGAREGRITDEMPHIHFDVKAKAQVFRPRAGHILEGRVNKVTSTHVGMLVCGIFNASVAAEAMGEGFTYDMASLAWRGPRG------QIIALGNDAQFVVKRMHEAAGLISIEGSL 167
            MA SPFEE++L++C+SLLPSDIGDIYAGIRR+IY++LM+YNEA+GGVLLAVS+LSF DGAREGRI DEMPHIHFDVKAKAQVFRPR GH+L+GRVNKVTSTHVGMLVCGIFNASVA+E+MGEGF +DM +  W+  RG      ++IA+G D QFVV RMHEAAGLISIEGSL
Sbjct:    1 MAASPFEEVELKMCVSLLPSDIGDIYAGIRRNIYQFLMRYNEALGGVLLAVSNLSFGDGAREGRIEDEMPHIHFDVKAKAQVFRPRPGHVLQGRVNKVTSTHVGMLVCGIFNASVASESMGEGFRFDMTAREWQRSRGGKDGAREVIAVGADTQFVVTRMHEAAGLISIEGSL 173          
BLAST of mRNA_H-paniculata_contig214.5629.1 vs. uniprot
Match: A0A835Z8S8_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z8S8_9STRA)

HSP 1 Score: 165 bits (418), Expect = 1.700e-43
Identity = 89/194 (45.88%), Postives = 116/194 (59.79%), Query Frame = 0
Query:    4 SPFEELDLEVCISLLPSDIGDIYAGIRRHIYRYLMKYNEAVGGVLLAVSSLSFADGAREGRITDEMPHIHFDVKAKAQVFRPRAGHILEGRVNK-------------VTSTHVGMLVCGIFNASV-AAEAMGEGFTYDMASLAWR----------------GPRGQIIALGNDAQFVVKRMHEAAGLISIEGSL 167
            SPFEE+ L +CISLLP  + DI+  IR+++Y+ LM YN  VGGV++A+  +  ADG   GRI +EMPH+HF+++A AQVFRPR+G +L GRV K             V+ THV MLVCGIFNAS+ A E  G G+ Y  A   W                 GP    + +G    F V+R+H+A GLISIEG L
Sbjct:   43 SPFEEVSLALCISLLPHALSDIFGSIRKNVYKLLMHYNRDVGGVIVALGDIRMADGEHHGRIMEEMPHLHFNIEANAQVFRPRSGALLNGRVMKPPLHAAFSCVYAQVSGTHVSMLVCGIFNASIYAGELEGVGYAYSDARARWERXXXXXXXXXXXXXXXGP--DAVEMGTSLDFTVRRLHQAQGLISIEGGL 234          
BLAST of mRNA_H-paniculata_contig214.5629.1 vs. uniprot
Match: A0A4D9D057_9STRA (RPA43_OB domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9D057_9STRA)

HSP 1 Score: 130 bits (328), Expect = 1.500e-33
Identity = 69/166 (41.57%), Postives = 102/166 (61.45%), Query Frame = 0
Query:    5 PFEELDLEVCISLLPSDIGDIYAGIRRHIYRYLMKYNEAVGGVLLAVSSLSFADGAREGRITDEMPHIHFDVKAKAQVFRPRAGHILEGRVNKVTSTHVGMLVCGIFNASVAAEAMGEGFTYDMASLAWRGPRG-QIIALGNDAQFVVKRMHEAAGLISIEGSLAE 169
            PF+E  +   ++LLP  +G++   I   ++  LMKYN+ VGG+LL +S + F    R   +  ++PH+H  V+A + VF P  G  L G V KVTSTHV +LV  +FNA++A E M E + +D    AW G  G +++ LG +  F V  +HEAAGLI+++GSL E
Sbjct:   31 PFQEQRVLFKLALLPDAMGNLEESIHEKLHDMLMKYNQDVGGILLTLSQVRFPPSRRFASVMGDLPHLHVRVEATSLVFTPEPGMSLTGVVIKVTSTHVALLVYDLFNAAIAREDMPEAYAFDNDREAWVGTGGKEVLGLGEEVAFRVALVHEAAGLIALDGSLRE 196          
BLAST of mRNA_H-paniculata_contig214.5629.1 vs. uniprot
Match: A0A2D4BXV9_PYTIN (S1 motif domain-containing protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BXV9_PYTIN)

HSP 1 Score: 126 bits (317), Expect = 4.300e-32
Identity = 67/162 (41.36%), Postives = 99/162 (61.11%), Query Frame = 0
Query:   15 ISLLPSDIGDIYAGIRRHIYRYLMKYNEAVGGVLLAVSSLSFADGAREGRITDEMPHIHFDVKAKAQVFRPRAGHILEGRVNKVTSTHVGMLVCGIFNASVAAEAMGEGFTYDMASLAWRGPRGQIIALGNDAQFVVKRMHEAAGLISIEGSLAEPPTTEEP 176
            +SLLP  IGD   GI + +   LM+Y++ + GV+L+ S++     +  G I +E P+IH  V A A VF+PR G  L G VNK+ S HVG+L+ G+FN SVAA  + +G+ ++ A  AW+G  G  I++G      V R+H A G+I+IE S+    TT +P
Sbjct:   15 VSLLPCHIGDARLGIDQEMTALLMRYSDKLEGVILSFSNVRLEKPS--GHILNEQPYIHCKVIADALVFQPRVGMTLSGVVNKIGSNHVGLLIAGVFNGSVAASELPKGYVHNYAEDAWKGADGTTISVGETITVKVARVHVAGGMIAIEASMRSSKTTSKP 174          
BLAST of mRNA_H-paniculata_contig214.5629.1 vs. uniprot
Match: F0W9G0_9STRA (Uncharacterized protein AlNc14C40G3419 n=1 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0W9G0_9STRA)

HSP 1 Score: 122 bits (307), Expect = 4.110e-31
Identity = 62/167 (37.13%), Postives = 99/167 (59.28%), Query Frame = 0
Query:    1 MATSPFEELDLEVCISLLPSDIGDIYAGIRRHIYRYLMKYNEAVGGVLLAVSSLSFADGAREGRITDEMPHIHFDVKAKAQVFRPRAGHILEGRVNKVTSTHVGMLVCGIFNASVAAEAMGEGFTYDMASLAWRGPRGQIIALGNDAQFVVKRMHEAAGLISIEGSL 167
            +A+SPF  + +   ++L P  + D   GI++ +   +M+YNE + GV+L  +S+   D    G I  + P++H  + A A VF+PR G +L+ ++NK+ S H+GML  G+FN SVAA  + EGF Y+    AW G  G  I + +     ++R+  A G+ISIEGS+
Sbjct:    3 LASSPFVSIKVRHSLTLSPCHLSDPLQGIQQELNGSVMQYNETLKGVILCFNSIHLGDPY--GHIISDSPYVHCKIIANALVFQPRQGMLLKAQINKIGSNHIGMLFVGVFNGSVAASELPEGFVYNYHKEAWIGKNGDTIKVDDVVTVKIQRVRVAGGMISIEGSM 167          
BLAST of mRNA_H-paniculata_contig214.5629.1 vs. uniprot
Match: A0A1V9ZJD1_9STRA (RPA43_OB domain-containing protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9ZJD1_9STRA)

HSP 1 Score: 123 bits (309), Expect = 5.080e-31
Identity = 69/164 (42.07%), Postives = 94/164 (57.32%), Query Frame = 0
Query:    4 SPFEELDLEVCISLLPSDIGDIYAGIRRHIYRYLMKYNEAVGGVLLAVSSLSFADGAREGRITDEMPHIHFDVKAKAQVFRPRAGHILEGRVNKVTSTHVGMLVCGIFNASVAAEAMGEGFTYDMASLAWRGPRGQIIALGNDAQFVVKRMHEAAGLISIEGSL 167
            SPF    L +  SL P  I D   G+   +   LMKY E V GV+LA   +   +    G I +E P+IH  V  +A VFRP+AG  L   VNKV S+H+G+L+ G+FN S+AA  M +G+ +  +  AW    G  IAL ++  F V R+H A G+ISIEGS+
Sbjct:    2 SPFVNAKLVMSCSLAPCHIHDAKKGLEEQLNLMLMKYCEPVEGVVLAFDGIKLLNPY--GHIINETPYIHVKVATEALVFRPKAGMTLSANVNKVGSSHIGLLLAGVFNVSIAAADMPKGYAHSYSDDAWINEDGATIALESEVSFTVVRVHVAHGVISIEGSM 163          
BLAST of mRNA_H-paniculata_contig214.5629.1 vs. uniprot
Match: A0A6G0XIV8_9STRA (RPA43_OB domain-containing protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XIV8_9STRA)

HSP 1 Score: 122 bits (305), Expect = 2.290e-30
Identity = 71/172 (41.28%), Postives = 99/172 (57.56%), Query Frame = 0
Query:    4 SPFEELDLEVCISLLPSDIGDIYAGIRRHIYRYLMKYNEAVGGVLLAVSSLSFADGAREGRITDEMPHIHFDVKAKAQVFRPRAGHILEGRVNKVTSTHVGMLVCGIFNASVAAEAMGEGFTYDMASLAWRGPRGQIIALGNDAQFVVKRMHEAAGLISIEGSLAEPPTTEE 175
            SPF +  L + +SL P  I +   G+   + + LMKY E V GVLL+ +SL   +    G I +E P IH  V A A VFRP  G  L   VNK+ S H+G+L+ G+FN S+AA  M  GF ++    AW G  G  I+L ++ +F V ++HEA G+ISI+G+L     T E
Sbjct:    3 SPFAKAKLVMSVSLAPYHIQNAKKGLEDQLSQMLMKYCEPVQGVLLSFNSLQMINPY--GHIINETPFIHVRVAADALVFRPTPGMKLSATVNKIGSNHIGLLLAGVFNVSIAATEMPSGFVHNHFEEAWVGEDGASISLQDEVRFKVLQVHEAHGVISIDGTLRSVKQTAE 172          
BLAST of mRNA_H-paniculata_contig214.5629.1 vs. uniprot
Match: T0RQ13_SAPDV (RPA43_OB domain-containing protein n=2 Tax=Saprolegnia TaxID=4769 RepID=T0RQ13_SAPDV)

HSP 1 Score: 120 bits (300), Expect = 1.100e-29
Identity = 68/164 (41.46%), Postives = 95/164 (57.93%), Query Frame = 0
Query:    4 SPFEELDLEVCISLLPSDIGDIYAGIRRHIYRYLMKYNEAVGGVLLAVSSLSFADGAREGRITDEMPHIHFDVKAKAQVFRPRAGHILEGRVNKVTSTHVGMLVCGIFNASVAAEAMGEGFTYDMASLAWRGPRGQIIALGNDAQFVVKRMHEAAGLISIEGSL 167
            SPF    L +  SL P  I D   G+   +   LMKY + V GV+LA ++++  +    G I +E P+IH  V A A VFRP  G  L   VNKV S H+G+L+ G+FN S+ A  M +G+T++    AW G  G  I LG +  F V R+H+A G+ISI+GS+
Sbjct:   14 SPFVNAKLVMSCSLAPCHIHDAKKGLEEQLNLMLMKYCDPVEGVILAFNAITLLNPY--GHIINETPYIHVRVAADALVFRPTPGMELSAVVNKVGSNHIGLLLAGVFNVSIDAAEMPDGYTHNFHEEAWVGDDGVTIELGAEVAFNVLRVHQAYGVISIDGSM 175          
BLAST of mRNA_H-paniculata_contig214.5629.1 vs. uniprot
Match: A0A024G6Y8_9STRA (Uncharacterized protein n=1 Tax=Albugo candida TaxID=65357 RepID=A0A024G6Y8_9STRA)

HSP 1 Score: 119 bits (297), Expect = 1.840e-29
Identity = 61/166 (36.75%), Postives = 97/166 (58.43%), Query Frame = 0
Query:    2 ATSPFEELDLEVCISLLPSDIGDIYAGIRRHIYRYLMKYNEAVGGVLLAVSSLSFADGAREGRITDEMPHIHFDVKAKAQVFRPRAGHILEGRVNKVTSTHVGMLVCGIFNASVAAEAMGEGFTYDMASLAWRGPRGQIIALGNDAQFVVKRMHEAAGLISIEGSL 167
            A+SPF  + +   +SL P  + D   GI++ +   +M+YNE + GV+L   S+   +    G I  + P++H  + A A VF+PR G +L+ ++NK+ S H+GML  G+FN SVAA  + EGF Y+    +W G  G II + +     ++R+  A G+ISIE S+
Sbjct:   19 ASSPFVSIKVRHSLSLSPCHLSDPLEGIKQELDESVMQYNETLKGVILCFDSVRLIEP--HGHIISDSPYVHCKIIANALVFQPRQGMLLKAQINKIGSNHIGMLFVGVFNGSVAASELPEGFVYNYHKESWIGNDGDIINVDDIVTVKIQRVRVAGGMISIEASM 182          
BLAST of mRNA_H-paniculata_contig214.5629.1 vs. uniprot
Match: A0A7S1XUY3_9STRA (Hypothetical protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XUY3_9STRA)

HSP 1 Score: 114 bits (285), Expect = 7.900e-29
Identity = 54/100 (54.00%), Postives = 69/100 (69.00%), Query Frame = 0
Query:    4 SPFEELDLEVCISLLPSDIGDIYAGIRRHIYRYLMKYNEAVGGVLLAVSSLSFADGAREGRITDEMPHIHFDVKAKAQVFRPRAGHILEGRVNKVTSTHV 103
            SPFE + L VC SLLPS +GD+  G+RR ++R LM+Y    GGV++   ++ FA GAR GRI DE PHIHFD+ A+A VF P+AG  L G V +V  THV
Sbjct:   34 SPFEVVTLRVCCSLLPSSLGDVPGGVRRQLFRLLMRYLPEAGGVVVGFQNIGFAPGARHGRIHDEEPHIHFDIVARALVFAPQAGLELVGEVQRVAQTHV 133          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig214.5629.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JDH5_9PHAE7.190e-8976.88RPA43_OB domain-containing protein n=2 Tax=Ectocar... [more]
A0A835Z8S8_9STRA1.700e-4345.88Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A4D9D057_9STRA1.500e-3341.57RPA43_OB domain-containing protein n=2 Tax=Monodop... [more]
A0A2D4BXV9_PYTIN4.300e-3241.36S1 motif domain-containing protein n=1 Tax=Pythium... [more]
F0W9G0_9STRA4.110e-3137.13Uncharacterized protein AlNc14C40G3419 n=1 Tax=Alb... [more]
A0A1V9ZJD1_9STRA5.080e-3142.07RPA43_OB domain-containing protein n=1 Tax=Achlya ... [more]
A0A6G0XIV8_9STRA2.290e-3041.28RPA43_OB domain-containing protein n=1 Tax=Aphanom... [more]
T0RQ13_SAPDV1.100e-2941.46RPA43_OB domain-containing protein n=2 Tax=Saprole... [more]
A0A024G6Y8_9STRA1.840e-2936.75Uncharacterized protein n=1 Tax=Albugo candida Tax... [more]
A0A7S1XUY3_9STRA7.900e-2954.00Hypothetical protein (Fragment) n=1 Tax=Phaeomonas... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR041178RPA43, OB domainPFAMPF17875RPA43_OBcoord: 85..128
e-value: 1.6E-7
score: 32.0
IPR036898RNA polymerase Rpb7-like, N-terminal domain superfamilyGENE3D3.30.1490.120coord: 1..88
e-value: 2.1E-8
score: 36.1
NoneNo IPR availableGENE3D2.40.50.1060coord: 89..217
e-value: 1.8E-18
score: 69.3
NoneNo IPR availablePANTHERPTHR12709:SF5DNA-DIRECTED RNA POLYMERASE I SUBUNIT RPA43coord: 12..188
NoneNo IPR availablePANTHERPTHR12709DNA-DIRECTED RNA POLYMERASE II, IIIcoord: 12..188
IPR005576RNA polymerase Rpb7-like , N-terminalPFAMPF03876SHS2_Rpb7-Ncoord: 15..83
e-value: 2.8E-8
score: 34.0

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig214contigH-paniculata_contig214:40699..44534 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig214.5629.1mRNA_H-paniculata_contig214.5629.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig214 40675..45490 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig214.5629.1 ID=prot_H-paniculata_contig214.5629.1|Name=mRNA_H-paniculata_contig214.5629.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=221bp
MATSPFEELDLEVCISLLPSDIGDIYAGIRRHIYRYLMKYNEAVGGVLLA
VSSLSFADGAREGRITDEMPHIHFDVKAKAQVFRPRAGHILEGRVNKVTS
THVGMLVCGIFNASVAAEAMGEGFTYDMASLAWRGPRGQIIALGNDAQFV
VKRMHEAAGLISIEGSLAEPPTTEEPLASDSLANAAVDGATTTSSKSFPN
KKRAKRISVGSSRGATMSEG*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR041178RPA43_OB
IPR036898RNA_pol_Rpb7-like_N_sf
IPR005576Rpb7-like_N