mRNA_H-paniculata_contig214.5629.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig214.5629.1
Unique NamemRNA_H-paniculata_contig214.5629.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
[Close]
BLAST of mRNA_H-paniculata_contig214.5629.1 vs. uniprot
Match: A0A6H5JDH5_9PHAE (RPA43_OB domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JDH5_9PHAE)

HSP 1 Score: 271 bits (693), Expect = 3.100e-84
Identity = 133/173 (76.88%), Postives = 154/173 (89.02%), Query Frame = 1 
Query:   25 MATSPFEELDLEVCISLLPSDIGDIYAGIRRHIYRYLMKYNEAVGGVLLAVSSLSFADGAREGRITDEMPHIHFDVKAKAQVFRPRAGHILEGRVNKVTSTHVGMLVCGIFNASVAAEAMGEGFTYDMASLAWRGPRG------QIIALGNDAQFVVKRMHEAAGLISIEGSL 525
            MA SPFEE++L++C+SLLPSDIGDIYAGIRR+IY++LM+YNEA+GGVLLAVS+LSF DGAREGRI DEMPHIHFDVKAKAQVFRPR GH+L+GRVNKVTSTHVGMLVCGIFNASVA+E+MGEGF +DM +  W+  RG      ++IA+G D QFVV RMHEAAGLISIEGSL
Sbjct:    1 MAASPFEEVELKMCVSLLPSDIGDIYAGIRRNIYQFLMRYNEALGGVLLAVSNLSFGDGAREGRIEDEMPHIHFDVKAKAQVFRPRPGHVLQGRVNKVTSTHVGMLVCGIFNASVASESMGEGFRFDMTAREWQRSRGGKDGAREVIAVGADTQFVVTRMHEAAGLISIEGSL 173
[Close]
BLAST of mRNA_H-paniculata_contig214.5629.1 vs. uniprot
Match: A0A835Z8S8_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z8S8_9STRA)

HSP 1 Score: 167 bits (422), Expect = 2.020e-40
Identity = 90/198 (45.45%), Postives = 117/198 (59.09%), Query Frame = 1 
Query:   22 TMATSPFEELDLEVCISLLPSDIGDIYAGIRRHIYRYLMKYNEAVGGVLLAVSSLSFADGAREGRITDEMPHIHFDVKAKAQVFRPRAGHILEGRVNK-------------VTSTHVGMLVCGIFNASV-AAEAMGEGFTYDMASLAWR----------------GPRGQIIALGNDAQFVVKRMHEAAGLISIEGSL 525
            T   SPFEE+ L +CISLLP  + DI+  IR+++Y+ LM YN  VGGV++A+  +  ADG   GRI +EMPH+HF+++A AQVFRPR+G +L GRV K             V+ THV MLVCGIFNAS+ A E  G G+ Y  A   W                 GP    + +G    F V+R+H+A GLISIEG L
Sbjct:   39 TTVVSPFEEVSLALCISLLPHALSDIFGSIRKNVYKLLMHYNRDVGGVIVALGDIRMADGEHHGRIMEEMPHLHFNIEANAQVFRPRSGALLNGRVMKPPLHAAFSCVYAQVSGTHVSMLVCGIFNASIYAGELEGVGYAYSDARARWERXXXXXXXXXXXXXXXGP--DAVEMGTSLDFTVRRLHQAQGLISIEGGL 234
[Close]
BLAST of mRNA_H-paniculata_contig214.5629.1 vs. uniprot
Match: A0A4D9D057_9STRA (RPA43_OB domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9D057_9STRA)

HSP 1 Score: 130 bits (328), Expect = 1.090e-30
Identity = 69/166 (41.57%), Postives = 102/166 (61.45%), Query Frame = 1 
Query:   37 PFEELDLEVCISLLPSDIGDIYAGIRRHIYRYLMKYNEAVGGVLLAVSSLSFADGAREGRITDEMPHIHFDVKAKAQVFRPRAGHILEGRVNKVTSTHVGMLVCGIFNASVAAEAMGEGFTYDMASLAWRGPRG-QIIALGNDAQFVVKRMHEAAGLISIEGSLAE 531
            PF+E  +   ++LLP  +G++   I   ++  LMKYN+ VGG+LL +S + F    R   +  ++PH+H  V+A + VF P  G  L G V KVTSTHV +LV  +FNA++A E M E + +D    AW G  G +++ LG +  F V  +HEAAGLI+++GSL E
Sbjct:   31 PFQEQRVLFKLALLPDAMGNLEESIHEKLHDMLMKYNQDVGGILLTLSQVRFPPSRRFASVMGDLPHLHVRVEATSLVFTPEPGMSLTGVVIKVTSTHVALLVYDLFNAAIAREDMPEAYAFDNDREAWVGTGGKEVLGLGEEVAFRVALVHEAAGLIALDGSLRE 196
[Close]
BLAST of mRNA_H-paniculata_contig214.5629.1 vs. uniprot
Match: A0A2D4BXV9_PYTIN (S1 motif domain-containing protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BXV9_PYTIN)

HSP 1 Score: 126 bits (317), Expect = 2.430e-29
Identity = 67/162 (41.36%), Postives = 99/162 (61.11%), Query Frame = 1 
Query:   67 ISLLPSDIGDIYAGIRRHIYRYLMKYNEAVGGVLLAVSSLSFADGAREGRITDEMPHIHFDVKAKAQVFRPRAGHILEGRVNKVTSTHVGMLVCGIFNASVAAEAMGEGFTYDMASLAWRGPRGQIIALGNDAQFVVKRMHEAAGLISIEGSLAEPPTTEEP 552
            +SLLP  IGD   GI + +   LM+Y++ + GV+L+ S++     +  G I +E P+IH  V A A VF+PR G  L G VNK+ S HVG+L+ G+FN SVAA  + +G+ ++ A  AW+G  G  I++G      V R+H A G+I+IE S+    TT +P
Sbjct:   15 VSLLPCHIGDARLGIDQEMTALLMRYSDKLEGVILSFSNVRLEKPS--GHILNEQPYIHCKVIADALVFQPRVGMTLSGVVNKIGSNHVGLLIAGVFNGSVAASELPKGYVHNYAEDAWKGADGTTISVGETITVKVARVHVAGGMIAIEASMRSSKTTSKP 174
[Close]
BLAST of mRNA_H-paniculata_contig214.5629.1 vs. uniprot
Match: F0W9G0_9STRA (Uncharacterized protein AlNc14C40G3419 n=1 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0W9G0_9STRA)

HSP 1 Score: 122 bits (307), Expect = 1.830e-28
Identity = 62/167 (37.13%), Postives = 99/167 (59.28%), Query Frame = 1 
Query:   25 MATSPFEELDLEVCISLLPSDIGDIYAGIRRHIYRYLMKYNEAVGGVLLAVSSLSFADGAREGRITDEMPHIHFDVKAKAQVFRPRAGHILEGRVNKVTSTHVGMLVCGIFNASVAAEAMGEGFTYDMASLAWRGPRGQIIALGNDAQFVVKRMHEAAGLISIEGSL 525
            +A+SPF  + +   ++L P  + D   GI++ +   +M+YNE + GV+L  +S+   D    G I  + P++H  + A A VF+PR G +L+ ++NK+ S H+GML  G+FN SVAA  + EGF Y+    AW G  G  I + +     ++R+  A G+ISIEGS+
Sbjct:    3 LASSPFVSIKVRHSLTLSPCHLSDPLQGIQQELNGSVMQYNETLKGVILCFNSIHLGDPY--GHIISDSPYVHCKIIANALVFQPRQGMLLKAQINKIGSNHIGMLFVGVFNGSVAASELPEGFVYNYHKEAWIGKNGDTIKVDDVVTVKIQRVRVAGGMISIEGSM 167
[Close]
BLAST of mRNA_H-paniculata_contig214.5629.1 vs. uniprot
Match: A0A1V9ZJD1_9STRA (RPA43_OB domain-containing protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9ZJD1_9STRA)

HSP 1 Score: 123 bits (309), Expect = 2.390e-28
Identity = 69/164 (42.07%), Postives = 94/164 (57.32%), Query Frame = 1 
Query:   34 SPFEELDLEVCISLLPSDIGDIYAGIRRHIYRYLMKYNEAVGGVLLAVSSLSFADGAREGRITDEMPHIHFDVKAKAQVFRPRAGHILEGRVNKVTSTHVGMLVCGIFNASVAAEAMGEGFTYDMASLAWRGPRGQIIALGNDAQFVVKRMHEAAGLISIEGSL 525
            SPF    L +  SL P  I D   G+   +   LMKY E V GV+LA   +   +    G I +E P+IH  V  +A VFRP+AG  L   VNKV S+H+G+L+ G+FN S+AA  M +G+ +  +  AW    G  IAL ++  F V R+H A G+ISIEGS+
Sbjct:    2 SPFVNAKLVMSCSLAPCHIHDAKKGLEEQLNLMLMKYCEPVEGVVLAFDGIKLLNPY--GHIINETPYIHVKVATEALVFRPKAGMTLSANVNKVGSSHIGLLLAGVFNVSIAAADMPKGYAHSYSDDAWINEDGATIALESEVSFTVVRVHVAHGVISIEGSM 163
[Close]
BLAST of mRNA_H-paniculata_contig214.5629.1 vs. uniprot
Match: A0A6G0XIV8_9STRA (RPA43_OB domain-containing protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XIV8_9STRA)

HSP 1 Score: 122 bits (305), Expect = 9.830e-28
Identity = 71/172 (41.28%), Postives = 99/172 (57.56%), Query Frame = 1 
Query:   34 SPFEELDLEVCISLLPSDIGDIYAGIRRHIYRYLMKYNEAVGGVLLAVSSLSFADGAREGRITDEMPHIHFDVKAKAQVFRPRAGHILEGRVNKVTSTHVGMLVCGIFNASVAAEAMGEGFTYDMASLAWRGPRGQIIALGNDAQFVVKRMHEAAGLISIEGSLAEPPTTEE 549
            SPF +  L + +SL P  I +   G+   + + LMKY E V GVLL+ +SL   +    G I +E P IH  V A A VFRP  G  L   VNK+ S H+G+L+ G+FN S+AA  M  GF ++    AW G  G  I+L ++ +F V ++HEA G+ISI+G+L     T E
Sbjct:    3 SPFAKAKLVMSVSLAPYHIQNAKKGLEDQLSQMLMKYCEPVQGVLLSFNSLQMINPY--GHIINETPFIHVRVAADALVFRPTPGMKLSATVNKIGSNHIGLLLAGVFNVSIAATEMPSGFVHNHFEEAWVGEDGASISLQDEVRFKVLQVHEAHGVISIDGTLRSVKQTAE 172
[Close]
BLAST of mRNA_H-paniculata_contig214.5629.1 vs. uniprot
Match: T0RQ13_SAPDV (RPA43_OB domain-containing protein n=2 Tax=Saprolegnia TaxID=4769 RepID=T0RQ13_SAPDV)

HSP 1 Score: 120 bits (300), Expect = 4.160e-27
Identity = 68/164 (41.46%), Postives = 95/164 (57.93%), Query Frame = 1 
Query:   34 SPFEELDLEVCISLLPSDIGDIYAGIRRHIYRYLMKYNEAVGGVLLAVSSLSFADGAREGRITDEMPHIHFDVKAKAQVFRPRAGHILEGRVNKVTSTHVGMLVCGIFNASVAAEAMGEGFTYDMASLAWRGPRGQIIALGNDAQFVVKRMHEAAGLISIEGSL 525
            SPF    L +  SL P  I D   G+   +   LMKY + V GV+LA ++++  +    G I +E P+IH  V A A VFRP  G  L   VNKV S H+G+L+ G+FN S+ A  M +G+T++    AW G  G  I LG +  F V R+H+A G+ISI+GS+
Sbjct:   14 SPFVNAKLVMSCSLAPCHIHDAKKGLEEQLNLMLMKYCDPVEGVILAFNAITLLNPY--GHIINETPYIHVRVAADALVFRPTPGMELSAVVNKVGSNHIGLLLAGVFNVSIDAAEMPDGYTHNFHEEAWVGDDGVTIELGAEVAFNVLRVHQAYGVISIDGSM 175
[Close]
BLAST of mRNA_H-paniculata_contig214.5629.1 vs. uniprot
Match: A0A024G6Y8_9STRA (Uncharacterized protein n=1 Tax=Albugo candida TaxID=65357 RepID=A0A024G6Y8_9STRA)

HSP 1 Score: 119 bits (297), Expect = 6.470e-27
Identity = 61/166 (36.75%), Postives = 97/166 (58.43%), Query Frame = 1 
Query:   28 ATSPFEELDLEVCISLLPSDIGDIYAGIRRHIYRYLMKYNEAVGGVLLAVSSLSFADGAREGRITDEMPHIHFDVKAKAQVFRPRAGHILEGRVNKVTSTHVGMLVCGIFNASVAAEAMGEGFTYDMASLAWRGPRGQIIALGNDAQFVVKRMHEAAGLISIEGSL 525
            A+SPF  + +   +SL P  + D   GI++ +   +M+YNE + GV+L   S+   +    G I  + P++H  + A A VF+PR G +L+ ++NK+ S H+GML  G+FN SVAA  + EGF Y+    +W G  G II + +     ++R+  A G+ISIE S+
Sbjct:   19 ASSPFVSIKVRHSLSLSPCHLSDPLEGIKQELDESVMQYNETLKGVILCFDSVRLIEP--HGHIISDSPYVHCKIIANALVFQPRQGMLLKAQINKIGSNHIGMLFVGVFNGSVAASELPEGFVYNYHKESWIGNDGDIINVDDIVTVKIQRVRVAGGMISIEASM 182
[Close]
BLAST of mRNA_H-paniculata_contig214.5629.1 vs. uniprot
Match: A0A7S1XUY3_9STRA (Hypothetical protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XUY3_9STRA)

HSP 1 Score: 114 bits (285), Expect = 2.000e-26
Identity = 54/100 (54.00%), Postives = 69/100 (69.00%), Query Frame = 1 
Query:   34 SPFEELDLEVCISLLPSDIGDIYAGIRRHIYRYLMKYNEAVGGVLLAVSSLSFADGAREGRITDEMPHIHFDVKAKAQVFRPRAGHILEGRVNKVTSTHV 333
            SPFE + L VC SLLPS +GD+  G+RR ++R LM+Y    GGV++   ++ FA GAR GRI DE PHIHFD+ A+A VF P+AG  L G V +V  THV
Sbjct:   34 SPFEVVTLRVCCSLLPSSLGDVPGGVRRQLFRLLMRYLPEAGGVVVGFQNIGFAPGARHGRIHDEEPHIHFDIVARALVFAPQAGLELVGEVQRVAQTHV 133
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig214.5629.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JDH5_9PHAE3.100e-8476.88RPA43_OB domain-containing protein n=2 Tax=Ectocar... [more]
A0A835Z8S8_9STRA2.020e-4045.45Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A4D9D057_9STRA1.090e-3041.57RPA43_OB domain-containing protein n=2 Tax=Monodop... [more]
A0A2D4BXV9_PYTIN2.430e-2941.36S1 motif domain-containing protein n=1 Tax=Pythium... [more]
F0W9G0_9STRA1.830e-2837.13Uncharacterized protein AlNc14C40G3419 n=1 Tax=Alb... [more]
A0A1V9ZJD1_9STRA2.390e-2842.07RPA43_OB domain-containing protein n=1 Tax=Achlya ... [more]
A0A6G0XIV8_9STRA9.830e-2841.28RPA43_OB domain-containing protein n=1 Tax=Aphanom... [more]
T0RQ13_SAPDV4.160e-2741.46RPA43_OB domain-containing protein n=2 Tax=Saprole... [more]
A0A024G6Y8_9STRA6.470e-2736.75Uncharacterized protein n=1 Tax=Albugo candida Tax... [more]
A0A7S1XUY3_9STRA2.000e-2654.00Hypothetical protein (Fragment) n=1 Tax=Phaeomonas... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig214contigH-paniculata_contig214:40675..45490 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score273.5
Seed ortholog evalue8.8e-71
Seed eggNOG ortholog2880.D7FQC3
Preferred nameTWISTNB
KEGG rclassRC02795
KEGG koko:K03004,ko:K03234
KEGG ReactionR00435,R00441,R00442,R00443
KEGG Pathwayko00230,ko00240,ko01100,ko03020,ko04152,ko04921,map00230,map00240,map01100,map03020,map04152,map04921
KEGG ModuleM00182
Hectar predicted targeting categoryother localisation
GOsGO:0000428,GO:0001054,GO:0003674,GO:0003824,GO:0003899,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005730,GO:0005736,GO:0006139,GO:0006351,GO:0006352,GO:0006353,GO:0006360,GO:0006361,GO:0006363,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009303,GO:0009893,GO:0009987,GO:0010033,GO:0010467,GO:0010468,GO:0010604,GO:0010628,GO:0016070,GO:0016072,GO:0016740,GO:0016772,GO:0016779,GO:0018130,GO:0019222,GO:0019438,GO:0030880,GO:0031974,GO:0031981,GO:0032774,GO:0032991,GO:0034062,GO:0034097,GO:0034641,GO:0034645,GO:0034654,GO:0034660,GO:0040029,GO:0042221,GO:0042790,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044452,GO:0044464,GO:0045815,GO:0046483,GO:0048518,GO:0050789,GO:0050896,GO:0051716,GO:0055029,GO:0060255,GO:0061695,GO:0065007,GO:0070013,GO:0070887,GO:0071310,GO:0071345,GO:0071704,GO:0090304,GO:0097659,GO:0097747,GO:0098781,GO:0140098,GO:1901360,GO:1901362,GO:1901576,GO:1902494,GO:1990234,GO:1990823,GO:1990830
EggNOG free text desc.transcription by RNA polymerase I
EggNOG OGsKOG4134@1,KOG4134@2759
Ec32 ortholog descriptionRNA polymerase Rpb7, N-terminal
Ec32 orthologEc-01_006640.1
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEbr01611,ko00000,ko00001,ko00002,ko03012,ko03021,ko04147
Exons4
Model size1643
Cds size663
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig214.5629.1prot_H-paniculata_contig214.5629.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig214 40699..44534 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929576.5060308-UTR-H-paniculata_contig214:40674..406981622929576.5060308-UTR-H-paniculata_contig214:40674..40698Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig214 40675..40698 +
1691480920.9450357-UTR-H-paniculata_contig214:40674..406981691480920.9450357-UTR-H-paniculata_contig214:40674..40698Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig214 40675..40698 +
1622929576.5671933-UTR-H-paniculata_contig214:44534..454901622929576.5671933-UTR-H-paniculata_contig214:44534..45490Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig214 44535..45490 +
1691480920.998927-UTR-H-paniculata_contig214:44534..454901691480920.998927-UTR-H-paniculata_contig214:44534..45490Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig214 44535..45490 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929576.518673-CDS-H-paniculata_contig214:40698..407281622929576.518673-CDS-H-paniculata_contig214:40698..40728Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig214 40699..40728 +
1691480920.958198-CDS-H-paniculata_contig214:40698..407281691480920.958198-CDS-H-paniculata_contig214:40698..40728Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig214 40699..40728 +
1622929576.5289786-CDS-H-paniculata_contig214:43255..435161622929576.5289786-CDS-H-paniculata_contig214:43255..43516Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig214 43256..43516 +
1691480920.968629-CDS-H-paniculata_contig214:43255..435161691480920.968629-CDS-H-paniculata_contig214:43255..43516Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig214 43256..43516 +
1622929576.5388124-CDS-H-paniculata_contig214:43846..440131622929576.5388124-CDS-H-paniculata_contig214:43846..44013Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig214 43847..44013 +
1691480920.978262-CDS-H-paniculata_contig214:43846..440131691480920.978262-CDS-H-paniculata_contig214:43846..44013Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig214 43847..44013 +
1622929576.5544238-CDS-H-paniculata_contig214:44329..445341622929576.5544238-CDS-H-paniculata_contig214:44329..44534Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig214 44330..44534 +
1691480920.9887884-CDS-H-paniculata_contig214:44329..445341691480920.9887884-CDS-H-paniculata_contig214:44329..44534Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig214 44330..44534 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig214.5629.1

>prot_H-paniculata_contig214.5629.1 ID=prot_H-paniculata_contig214.5629.1|Name=mRNA_H-paniculata_contig214.5629.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=221bp
MATSPFEELDLEVCISLLPSDIGDIYAGIRRHIYRYLMKYNEAVGGVLLA
VSSLSFADGAREGRITDEMPHIHFDVKAKAQVFRPRAGHILEGRVNKVTS
THVGMLVCGIFNASVAAEAMGEGFTYDMASLAWRGPRGQIIALGNDAQFV
VKRMHEAAGLISIEGSLAEPPTTEEPLASDSLANAAVDGATTTSSKSFPN
KKRAKRISVGSSRGATMSEG*
back to top

mRNA from alignment at H-paniculata_contig214:40675..45490+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig214.5629.1 ID=mRNA_H-paniculata_contig214.5629.1|Name=mRNA_H-paniculata_contig214.5629.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=4816bp|location=Sequence derived from alignment at H-paniculata_contig214:40675..45490+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CGCGTCATCTGCAGCTATCCCACCATGGCTACGTCTCCTTTCGAAGAACT
AGATGTGAGTATTATCACTGCAGTGCAGTAGAATCTTTCTCACAACAGCA
CCTTAGCGCTAGATTCAAGAAGGTTGCTGATAATTTCACGTTTGCGTTGT
TGGTGACCAGGTGAGAACAAACGACAGGCCATTCAAATATTCTGGCTGTA
CTGTAATGTAGCTCTTCGTGCCGGTATGAGCTCCTACTGTGGTGCCCGGC
AAGCTCATGTTTATCTCTGGTGTCAGTCTGTTGCTGCAACGTTAAGCTTC
CCTATTGTTTTGATGTTGTCTTTCTTGACTGTTGGGTATCAATAGTAGCG
TACGGTTTCCATCTCCTGGCACCCTACCCTTCACACGGACAGTCGATCCA
AGCGTCCCAACGTTGAAAAATCGTCTAAACCGTTACAAAACTGTCACTGT
CTGTGCGCATGGGATACGACGGCAAGGATAGTACATCTGGAAGACTAACC
TAAAATAAGCGGCCTAAAGAATTGTCTCAGATGGTCTGTAGGGGAGTACC
GCCTGTGACGGAGGATAACATCCGTGGGGGCAGGGGATGCATGTCCCCGC
ACATTTTTCTATATAAGACGGAGAGCGAAACGCCCAAAAGATACGCCCAT
AGGCAACTCGGGACGAGTTCTGTTCGCACAGTTGATGTACCCAACAGTTG
CCCCCTCCTAGTTGACAAAAAAATACCAGTAACAGTTATCTCTCCTCTCC
TTACGGCATCGACTTTTATGATCCAGCATGAAAAAGGGTAATAATAACTC
TCCTCGATCGACGTTGTGCGAAGATAAAAATACCCCTCTCGCTGAGAGGT
GGCTAAGAGGTGGCGATGACGTTAACCCCGCTTTTTTTACAAGTCGTTTC
CTATTTTCAAGAAAGCTGACGGGGGGTAACCAAAAAACCGGACCAACTCA
AAAGGAGACGTATTGTTTTTCCTTCACAAATATGTAGCGTGTGTTGGGTG
AGGAGCTAACATGGTCCGCAGGATACTACAGTACTCGATACTACCCACTA
GTTTCTTATCTCCCGCCATTTGAGCGACCTTGTTCGTGTTCGATTATCAA
TTTTGGTGATCGATCGGGACTGTGAGCCCACGGCCTTCCGGACTACAGCC
AGACAGGGTATATCACAGTGTTGCCAATGTAAATAGAGGGCAACTGTCTG
AAGGTATTCTACCACACATGCCTCAAGAGCCGACTGTCGAATTGACTTTG
ACTCGGTTGACAAGGCTTACATGGATGCCTTCGCTTTTGCTCAAGGATTT
AGAAGCGCACAGGTATCCCAAACGTCTTCCGTCTCTTTATTTTCGAGAAA
ATTCCAACGAGCTGCAGATAAGTACTGACCGCTCTCCACCCCCTTGGCCA
GAAAATTACACCCCAGAAAGCCATCCTCTGGAGCCATCATCCACGGCACT
CCTGCACTGTCGCATTCCACCCGTAAGGCCATCTCTTATGGGGTCGGATT
TTCTAACCCAAACACAGATTTTCGAATTTTTCGACTCCGAGAAATTCGAT
TTCGCATGTTATGCGGTTGGATTTCTTGGAAATCTGAGTTCAGAAATTCG
AGACGGAAGTTACAGCCGGTCCCATTCCCCGATTTCTGGCAGAAATCAGA
GCTACCCTCGCATATCGAATTTCTTGGAGTTCGACCACATCAAAGGTGTT
GATGTTGTTTTTCATCCAGAGTTTGAAATGTCGCAGCCTATGGCAACACA
CAACCACGATGATACAGACAAGCCAAGGTGTGTGACCCCCGCCGCCATAT
GGAACTTGCGGGACAGCTGAAATGCCAAGCCATGAACTTCAAAGATTTCT
ATTCTGCTAAATGATCATCAACATGGCGCTTGCTGCTGTAGAGGCGACCA
TAGATTATCTAGAAGAGGACAGACGCATTCGAGAGGGGGTTTCCTCCACC
CAGCGGAGAAAGCTGTGAACCGCGATCTAATCGTACAATTCAACCGCGGC
CTTGTTCCTGTTGACCTGAGACATGGTCCCGCCGTTCTGCTTCACACCAG
TACAAGCGTACCACAGTGGTACACTCTACAGTATCATCCACTGTGCCTTG
CTGACAGCCGATTTGATCCCCTGAGCCTTCATCTCACTCCACACCCATTT
CACGTATGGGTTGTCGTAAGATGCATCGCAGTTGACGTACACTCGTGATC
GTGTGCTTTTTAAATGGTGATGCGAGTGTGTGCTAGGGGGTGTGCTGGAG
GACCCAAAGTTGGAGGGTGTGTTTGAATTTGAATTATGCCGCTTGTACTA
CTACGCCTGCAAACCTTCATAAAAACCATCTCCGGGAAATCCGACCCCAT
AACAAACGCGAATCGAATATTGAAGATCAGATTTTTTCACCCTTGGAGAA
ACCGGAAAGTAGAGAAATTAAAATGAAAAAATCCGACCTCATAAGAGATG
GCCTATTATATTCACCCCCACAACCCACACAAGATACATGCTGCAGCTCC
CGAATAATCTCACCAACCCTAACCAAGCTTGCGACTTCCCATGCATGAGC
ATCACATGACACCTATTTCGTTCGTGCACAGCTAGAGGTATGTATCAGCC
TCCTCCCGAGCGACATCGGGGACATATACGCAGGCATCCGGCGACACATC
TACCGCTACCTCATGAAGTACAACGAAGCCGTGGGAGGCGTGCTGTTGGC
CGTCTCAAGTCTCTCATTTGCCGACGGTGCCCGAGAAGGCCGCATCACGG
ACGAGATGCCACATATTCACTTCGATGTGAAGGCTAAGGCCCAGGTGTTT
CGGCCGCGCGCTGGCCACATTCTGGAGGGACGCGTGAACAAGGTAGCTGG
GTTGGATAGCAATGGGTAGGGTAGTTGATACTTCCGATGTGGTACCGTGG
TTATGGACGTGGAGTATTCGAGTATAGCCCGCGGTCGAAGTTTGATATAA
GTTTCAGTCCTTGACTCTCTCCACCACTGCGCCTTCTGTGTAGTATGGCA
CCTACGTAGACTTCGCGTAATGTGTCGCAGGGGCCCTACTTCAAAGGTAA
CAAGGTGATTTGTCAACGGAATCTCACGCGCCAATCGAATAGAGCAGAAA
GGGATGAAGAAGTGAAAATGATACATCTTTAATCAACTATGTGACCTCTT
CGTTTTGCGTTGCGTTGTGTAGGTAACCAGCACCCACGTGGGCATGCTAG
TGTGCGGGATATTTAACGCCTCGGTGGCGGCCGAAGCGATGGGTGAAGGG
TTCACGTATGATATGGCAAGTCTGGCGTGGAGAGGGCCTCGAGGCCAGAT
TATCGCTCTGGGAAATGACGCGCAATTTGTCGTGAAGAGGTGAGACGGTC
GCCCTCTCACAATCGCTGTCTAACGAACATAAAAAAAACTTGTGTGTGAC
ACACAACACGCCTACTCCATATCCACGGAGAGCGGTGTTCGACAGATATC
CGTGTCGGTGAGACCGTTGGTGCCTCTGTTTGTCGATGCTAAACTTGCAG
GGTCAAAATAGCAGAACCAGGATTAGTTAGATTTACCGTGAAATCATTTT
TAGCGCGTCTTCGTCCGTACTGTAGGCACTCCCTTTCCTCTCCGCTGAGT
CCCGCATAATACAAGTTTCTCTCCCTCGTGAAAAACAACCTTTTTTTCGC
GTCAGGATGCACGAGGCAGCCGGATTGATCTCTATTGAAGGTTCGTTGGC
GGAACCGCCAACGACAGAGGAACCTTTGGCTTCCGATTCGCTTGCGAATG
CAGCCGTTGATGGTGCGACAACTACGAGCAGCAAGTCTTTTCCCAACAAG
AAAAGGGCTAAGAGGATCTCCGTCGGCAGTAGCAGGGGTGCAACCATGAG
TGAAGGATAGCCCCCAGCTTGATTCAATATTAGAAGGAGTTTTCGGCTGA
GTGGAGAAGAATTCGAATCCCGTTTGCCGTTACCTCTGAAGAAAAACGGC
TCGTGAAGGAAGCATTAGTATTGCATTGTCGCTACTCGTAAGTGGTAAAT
AGGTAAACCTCGTTTTTTCAGGGAAGTGAGAGGAATTGATTACTGTAGCG
ATATGGTTCTATGTCTGTGAGTTACCCCGCAAGTGTTGCCATGCTGCTAT
TTTCGAAGCACTCCTGCTGCAGTATACACATGTCTTCTTGTTTCATGTTC
TTCCGGAGGCGTCGATTTGTGTTTATGGGGGATTGAATGGTCGTGGTCAA
TTTGCGCTAACTGTTGGTTGACGAAAACAGCTCGCGATATATTAGGTGTA
GTCGATATTTTGTGTGGAGACTTCCCCCAATTTCGAACCAATTCTTTTGT
CGACTCATGTAGTGAAATGTAGTGAAGTCGATGTGCTGATGTTAGAGAAG
GTTGGCGTAGCTTCAATACGCAAGAGAGACAAGGAAATGACTTGCGTGTG
TGTGTGTCTGTACATTTTGCCATGGCGGTACTCTGTCAAGGTCGGGGGGT
GGAAACGCGTGGCAAGCAAAACATAAACCGAAACATTTGTTTCGACTCTT
TTACGTTTCCCACCCGGAACTACGTGGCAGAGACGATAGTTGTAGTTATT
CTTACCCAGTGCAAAAAGGAGGTCATGTGGTATACATGTGCGATCTTGAT
ACAAGTCACGCTGACTGTATGCGGAGACGTATCTGTATATTTTTATGAAG
CTAGAGGACTGGGACTAGGTAGTGTGTACCGGTACCCATCAGTCCTTCAC
GAAAATGTGTTTGTTTTTTTCCGTAGTTTGTTCAACCCTTGTATTATACC
AGATATTTGTAGACGAAGTCTCAACTAGCAATTTCCCTTTAACACAAAAA
AAAAAAATGTAAGACG
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig214:40675..45490+

>mRNA_H-paniculata_contig214.5629.1 ID=mRNA_H-paniculata_contig214.5629.1|Name=mRNA_H-paniculata_contig214.5629.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1326bp|location=Sequence derived from alignment at H-paniculata_contig214:40675..45490+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGCTACGTCTCCTTTCGAAGAACTAGATATGGCTACGTCTCCTTTCGA
AGAACTAGATCTAGAGGTATGTATCAGCCTCCTCCCGAGCGACATCGGGG
ACATATACGCAGGCATCCGGCGACACATCTACCGCTACCTCATGAAGTAC
AACGAAGCCGTGGGAGGCGTGCTGTTGGCCGTCTCAAGTCTCTCATTTGC
CGACGGTGCCCGAGAAGGCCGCATCACGGACGAGATGCCACATATTCACT
TCGATGTGAAGGCTAAGGCCCAGGTGTTTCGGCCGCGCGCTGGCCACATT
CTGGAGGGACGCGTGAACAAGCTAGAGGTATGTATCAGCCTCCTCCCGAG
CGACATCGGGGACATATACGCAGGCATCCGGCGACACATCTACCGCTACC
TCATGAAGTACAACGAAGCCGTGGGAGGCGTGCTGTTGGCCGTCTCAAGT
CTCTCATTTGCCGACGGTGCCCGAGAAGGCCGCATCACGGACGAGATGCC
ACATATTCACTTCGATGTGAAGGCTAAGGCCCAGGTGTTTCGGCCGCGCG
CTGGCCACATTCTGGAGGGACGCGTGAACAAGGTAACCAGCACCCACGTG
GGCATGCTAGTGTGCGGGATATTTAACGCCTCGGTGGCGGCCGAAGCGAT
GGGTGAAGGGTTCACGTATGATATGGCAAGTCTGGCGTGGAGAGGGCCTC
GAGGCCAGATTATCGCTCTGGGAAATGACGCGCAATTTGTCGTGAAGAGG
TAACCAGCACCCACGTGGGCATGCTAGTGTGCGGGATATTTAACGCCTCG
GTGGCGGCCGAAGCGATGGGTGAAGGGTTCACGTATGATATGGCAAGTCT
GGCGTGGAGAGGGCCTCGAGGCCAGATTATCGCTCTGGGAAATGACGCGC
AATTTGTCGTGAAGAGGATGCACGAGGCAGCCGGATTGATCTCTATTGAA
GGTTCGTTGGCGGAACCGCCAACGACAGAGGAACCTTTGGCTTCCGATTC
GCTTGCGAATGCAGCCGTTGATGGTGCGACAACTACGAGCAGCAAGTCTT
TTCCCAACAAGAAAAGGGCTAAGAGGATCTCCGTCGGCAGTAGCAGGGGT
GCAACCATGAGTGAAGGATAGGATGCACGAGGCAGCCGGATTGATCTCTA
TTGAAGGTTCGTTGGCGGAACCGCCAACGACAGAGGAACCTTTGGCTTCC
GATTCGCTTGCGAATGCAGCCGTTGATGGTGCGACAACTACGAGCAGCAA
GTCTTTTCCCAACAAGAAAAGGGCTAAGAGGATCTCCGTCGGCAGTAGCA
GGGGTGCAACCATGAGTGAAGGATAG
back to top