prot_H-paniculata_contig21346.5607.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig21346.5607.1
Unique Nameprot_H-paniculata_contig21346.5607.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length34
Homology
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BLAST of mRNA_H-paniculata_contig21346.5607.1 vs. uniprot
Match: D7G3M8_ECTSI (Similar to metal response element-binding transcription factor-1 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G3M8_ECTSI)

HSP 1 Score: 60.5 bits (145), Expect = 1.060e-9
Identity = 21/31 (67.74%), Postives = 26/31 (83.87%), Query Frame = 0 
Query:    3 CTECGKNFLDNYHLKRHVKALHEGSRPFKCD 33
            C  CG+NFLDNYHL+RH+KA+HE  RP+ CD
Sbjct:  222 CGNCGRNFLDNYHLQRHIKAIHEAPRPYTCD 252
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig21346.5607.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G3M8_ECTSI1.060e-967.74Similar to metal response element-binding transcri... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D3.30.160.60coord: 1..33
e-value: 3.0E-10
score: 41.8
IPR013087Zinc finger C2H2-typePROSITEPS00028ZINC_FINGER_C2H2_1coord: 3..24
IPR013087Zinc finger C2H2-typePROSITEPS50157ZINC_FINGER_C2H2_2coord: 1..29
score: 14.586
IPR036236Zinc finger C2H2 superfamilySUPERFAMILY57667beta-beta-alpha zinc fingerscoord: 1..33

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig21346contigH-paniculata_contig21346:509..610 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig21346.5607.1mRNA_H-paniculata_contig21346.5607.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig21346 509..610 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig21346.5607.1 ID=prot_H-paniculata_contig21346.5607.1|Name=mRNA_H-paniculata_contig21346.5607.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=34bp
HACTECGKNFLDNYHLKRHVKALHEGSRPFKCDF
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013087Znf_C2H2_type
IPR036236Znf_C2H2_sf