mRNA_H-paniculata_contig21346.5607.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig21346.5607.1
Unique NamemRNA_H-paniculata_contig21346.5607.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig21346.5607.1 vs. uniprot
Match: D7G3M8_ECTSI (Similar to metal response element-binding transcription factor-1 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G3M8_ECTSI)

HSP 1 Score: 60.5 bits (145), Expect = 1.060e-9
Identity = 21/31 (67.74%), Postives = 26/31 (83.87%), Query Frame = 1 
Query:    7 CTECGKNFLDNYHLKRHVKALHEGSRPFKCD 99
            C  CG+NFLDNYHL+RH+KA+HE  RP+ CD
Sbjct:  222 CGNCGRNFLDNYHLQRHIKAIHEAPRPYTCD 252
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig21346.5607.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G3M8_ECTSI1.060e-967.74Similar to metal response element-binding transcri... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig21346contigH-paniculata_contig21346:509..610 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size102
Cds size102
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929572.913521-CDS-H-paniculata_contig21346:508..6101622929572.913521-CDS-H-paniculata_contig21346:508..610Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig21346 509..610 +
1691480919.4850993-CDS-H-paniculata_contig21346:508..6101691480919.4850993-CDS-H-paniculata_contig21346:508..610Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig21346 509..610 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig21346.5607.1prot_H-paniculata_contig21346.5607.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig21346 509..610 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig21346.5607.1

>prot_H-paniculata_contig21346.5607.1 ID=prot_H-paniculata_contig21346.5607.1|Name=mRNA_H-paniculata_contig21346.5607.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=34bp
HACTECGKNFLDNYHLKRHVKALHEGSRPFKCDF
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mRNA from alignment at H-paniculata_contig21346:509..610+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig21346.5607.1 ID=mRNA_H-paniculata_contig21346.5607.1|Name=mRNA_H-paniculata_contig21346.5607.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=102bp|location=Sequence derived from alignment at H-paniculata_contig21346:509..610+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CACGCCTGCACCGAGTGCGGCAAGAACTTTCTGGACAACTACCACCTCAA
GCGGCACGTGAAGGCCTTGCACGAGGGGTCTCGACCCTTCAAGTGTGACT
TT
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Coding sequence (CDS) from alignment at H-paniculata_contig21346:509..610+

>mRNA_H-paniculata_contig21346.5607.1 ID=mRNA_H-paniculata_contig21346.5607.1|Name=mRNA_H-paniculata_contig21346.5607.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=204bp|location=Sequence derived from alignment at H-paniculata_contig21346:509..610+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CACGCCTGCACCGAGTGCGGCAAGAACTTTCTGGACAACTACCACCTCAA
GCGGCACGTGAAGGCCTTGCACGAGGGGTCTCGACCCTTCAAGTGTGACT
TTCACGCCTGCACCGAGTGCGGCAAGAACTTTCTGGACAACTACCACCTC
AAGCGGCACGTGAAGGCCTTGCACGAGGGGTCTCGACCCTTCAAGTGTGA
CTTT
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