prot_H-paniculata_contig213.5592.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig213.5592.1
Unique Nameprot_H-paniculata_contig213.5592.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length196
Homology
BLAST of mRNA_H-paniculata_contig213.5592.1 vs. uniprot
Match: A0A6G0WHK2_9STRA (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WHK2_9STRA)

HSP 1 Score: 146 bits (369), Expect = 1.380e-39
Identity = 85/200 (42.50%), Postives = 128/200 (64.00%), Query Frame = 0
Query:    1 RKAIRTKLIFKRKLKEDGSVARYKARLVAQGFSQVEGEDFFETSALVARTLTCAVF-SLAVEYDFELEGMDIDAAYLNAPVEEELIVKLPSQFSPSSRD--TPFVRRLRKNLYGLKQSGRNWNNTLDDFFVGIGLDRSTIDSCLYFSRDDRGETDLLVAVYLDGLVIAGRR-EKVDEFKHNISQRFRMKDLGSLSRMLGI 196
            RKAI  K +FK K K DGS+ +YKARLVA+G+SQ  G D+ ET   VA+  +  V  SLA +++ EL+ MD++ A+LN+ ++E++ +++P   +       +  V +L+K+LYGLKQ+ R WN T+D F + IG  +S  D C+Y  R D  E  +LV++Y+D L++A    E +   K  +S+RF+M DLG LS  LGI
Sbjct:   86 RKAIGCKWVFKVKEKADGSIDKYKARLVAKGYSQTFGIDYEETFTPVAKFTSIRVLLSLAAKHNLELQQMDVNTAFLNSDLDEDIYMEIPMGLNDHKNPGLSKPVLKLKKSLYGLKQAPRLWNQTIDGFMLSIGFVKSKADHCIYIKRQD--EDIILVSLYVDDLILASNSDEMMQTTKIALSKRFKMTDLGPLSYCLGI 283          
BLAST of mRNA_H-paniculata_contig213.5592.1 vs. uniprot
Match: A0A6A4ZM73_9STRA (Integrase catalytic domain-containing protein (Fragment) n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A6A4ZM73_9STRA)

HSP 1 Score: 151 bits (381), Expect = 4.980e-39
Identity = 85/201 (42.29%), Postives = 128/201 (63.68%), Query Frame = 0
Query:    1 RKAIRTKLIFKRKLKEDGSVARYKARLVAQGFSQVEGEDFFETSALVARTLTCAVF-SLAVEYDFELEGMDIDAAYLNAPVEEELIVKLPSQFSPSSRDT---PFVRRLRKNLYGLKQSGRNWNNTLDDFFVGIGLDRSTIDSCLYFSRDDRGETDLLVAVYLDGLVIAGRREKVDEFKHN-ISQRFRMKDLGSLSRMLGI 196
            RKAI +K +FK K K DGS+ ++KARLVA+GFSQ  G D+ ET A VA+  +  +  SLA +Y  +L+ MD+  A+LN  ++EE+ +K+P     ++ D+   P V RL+K+LYGLKQ+ R WN T DDF +  G ++S  D C+Y  R D  +  + +++Y+D L++A    ++ +   N +  RF+M DLGSL   LGI
Sbjct:  343 RKAIGSKWVFKVKEKADGSIDKFKARLVAKGFSQQYGVDYEETFAPVAKFASIRILLSLAAQYSLDLQQMDVKTAFLNGTLDEEIYMKIPEGLDVNNGDSKSGPLVLRLKKSLYGLKQAPRLWNKTFDDFMLSNGFNKSEADHCIYSKRTD--DDLMFISLYVDDLIMASNCPRLMKATKNALHGRFKMSDLGSLQYCLGI 541          
BLAST of mRNA_H-paniculata_contig213.5592.1 vs. uniprot
Match: H3H934_PHYRM (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3H934_PHYRM)

HSP 1 Score: 141 bits (356), Expect = 6.720e-38
Identity = 83/199 (41.71%), Postives = 123/199 (61.81%), Query Frame = 0
Query:    1 RKAIRTKLIFKRKLKEDGSVARYKARLVAQGFSQVEGEDFFETSALVAR-TLTCAVFSLAVEYDFELEGMDIDAAYLNAPVEEELIVKLPSQFSPSSRDTP-FVRRLRKNLYGLKQSGRNWNNTLDDFFVGIGLDRSTIDSCLYFSRDDRGETDLLVAVYLDGLVIAGRREKV-DEFKHNISQRFRMKDLGSLSRMLGI 196
            RKAI  + +F+ K  + G + R+KARLVA+GFSQ  G D+ ET A VA+ T    V SLA +Y  +L  MD+  A+LN  ++E++ +  P  +     D P  V +L+++LYGLKQS R WN T+DDF + +G  +   D C+Y  RD  G+  + VA+Y+D LV+A   +++ +  KH +S+RF M DLG L   LG+
Sbjct:   26 RKAIGCRWVFRVKDNQAGEIERFKARLVAKGFSQKYGIDYDETFAPVAKFTSIRIVLSLAAKYGLKLHQMDVKTAFLNGVLDEDIYMAQPDGYV--DEDHPDHVCKLKRSLYGLKQSPRMWNQTIDDFMLKLGFKKCESDHCVYLKRD--GQDMIFVALYVDDLVLASSNDELLESTKHALSKRFEMTDLGELEYFLGM 220          
BLAST of mRNA_H-paniculata_contig213.5592.1 vs. uniprot
Match: W7TII5_9STRA (Gag-pol polyprotein n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TII5_9STRA)

HSP 1 Score: 141 bits (355), Expect = 1.280e-37
Identity = 81/186 (43.55%), Postives = 114/186 (61.29%), Query Frame = 0
Query:   16 EDGSVARYKARLVAQGFSQVEGEDFFETSALVARTLTCA-VFSLAVEYDFELEGMDIDAAYLNAPVEEELIVKLP---SQFSPSSRDTPFVRRLRKNLYGLKQSGRNWNNTLDDFFVGIGLDRSTIDSCLYFSRDDRGETDLLVAVYLDGLVIAGR-REKVDEFKHNISQRFRMKDLGSLSRMLGI 196
            ++G + R KAR +A+G+SQ  G D+  T A VA   T   + ++A   D EL+ MD+D AYL + +EE++ VK P    Q  P+  +   V RLRK+LYGLKQSGRNW+  +D +F G G   S+ D CLY      GE  L++ +Y+D L+IAG  R+ VD+FK  IS+   MKDL  L  +LG+
Sbjct:   30 QNGIIVRRKARFIAKGYSQEYGYDYLNTYAPVASITTIRLILAIACILDLELDNMDVDTAYLQSDLEEKIYVKQPPGYEQCGPNGEE--LVCRLRKSLYGLKQSGRNWHKKIDGWFRGYGFHSSSADPCLYVKFGSSGEM-LVIVLYVDDLIIAGNSRDMVDDFKQAISKEISMKDLKELDWILGM 212          
BLAST of mRNA_H-paniculata_contig213.5592.1 vs. uniprot
Match: A0A7D9HG25_PARCT (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A7D9HG25_PARCT)

HSP 1 Score: 143 bits (360), Expect = 4.990e-37
Identity = 76/187 (40.64%), Postives = 117/187 (62.57%), Query Frame = 0
Query:   14 LKEDGS-VARYKARLVAQGFSQVEGEDFFETSALVARTLTCAVF-SLAVEYDFELEGMDIDAAYLNAPVEEELIVKLPSQFSPSSRD-TPFVRRLRKNLYGLKQSGRNWNNTLDDFFVGIGLDRSTIDSCLYFSRDDRGETDLLVAVYLDGLVIAGRR-EKVDEFKHNISQRFRMKDLGSLSRMLGI 196
            +KED + +   KAR VA+G+SQV G D+ ET +  A   +  +   LA +YD  +  MD+  A+L+AP++ E+ ++ P  F   S +    V RL+K+LYGLKQSGRNWN  LD++ +  G  R+ +D C+Y  +   GE  ++V +++D L+IA    +K+ +FK N+  +FRMKDLG +S  LGI
Sbjct:  197 IKEDANGLETLKARYVAKGYSQVHGIDYEETFSPTANITSITILMQLAAQYDLTVHQMDVKTAFLHAPIDHEIFMEQPMGFEELSENGVKLVYRLKKSLYGLKQSGRNWNRVLDEYLISDGFVRNPVDHCVY--QKQTGEDIIIVVIWVDDLIIASSNTDKIRQFKENMKSKFRMKDLGEISYFLGI 381          
BLAST of mRNA_H-paniculata_contig213.5592.1 vs. uniprot
Match: H3H7D1_PHYRM (Reverse transcriptase Ty1/copia-type domain-containing protein n=2 Tax=Phytophthora ramorum TaxID=164328 RepID=H3H7D1_PHYRM)

HSP 1 Score: 137 bits (346), Expect = 5.280e-37
Identity = 82/199 (41.21%), Postives = 121/199 (60.80%), Query Frame = 0
Query:    1 RKAIRTKLIFKRKLKEDGSVARYKARLVAQGFSQVEGEDFFETSALVAR-TLTCAVFSLAVEYDFELEGMDIDAAYLNAPVEEELIVKLPSQFSPSSRDTP-FVRRLRKNLYGLKQSGRNWNNTLDDFFVGIGLDRSTIDSCLYFSRDDRGETDLLVAVYLDGLVIAGRREKVD-EFKHNISQRFRMKDLGSLSRMLGI 196
            RKAI  + +F+ K  + G + R+KARLVA+GFSQ  G D+ ET A VA+ T    V SLA +Y  +L  MD+  A+LN  ++E++ +  P  +     D P  V +L+++LYGLKQS R WN T+DDF + +G  +   D C+Y  RD  G+  + VA+Y+D LV+A   +K+  + K  +S RF M D+G L   LG+
Sbjct:   43 RKAIGCRWVFRVKENQAGEIERFKARLVAKGFSQKYGIDYDETFAPVAKFTSIRIVLSLAAKYGLKLHQMDVKTAFLNGVLDEDIYMAQPDGYV--DEDHPDHVCKLKRSLYGLKQSPRMWNQTIDDFMLKLGFKKCESDHCIYLKRD--GQDMIFVALYVDDLVLASSSDKMLLDTKQALSHRFEMTDMGQLKYFLGM 237          
BLAST of mRNA_H-paniculata_contig213.5592.1 vs. uniprot
Match: H3H8P6_PHYRM (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3H8P6_PHYRM)

HSP 1 Score: 139 bits (350), Expect = 6.480e-37
Identity = 82/199 (41.21%), Postives = 122/199 (61.31%), Query Frame = 0
Query:    1 RKAIRTKLIFKRKLKEDGSVARYKARLVAQGFSQVEGEDFFETSALVAR-TLTCAVFSLAVEYDFELEGMDIDAAYLNAPVEEELIVKLPSQFSPSSRDTP-FVRRLRKNLYGLKQSGRNWNNTLDDFFVGIGLDRSTIDSCLYFSRDDRGETDLLVAVYLDGLVIAGRREKV-DEFKHNISQRFRMKDLGSLSRMLGI 196
            RKAI  + +F+ K  + G + R+KARLVA+GFSQ    D+ ET A VA+ T    V SLA +Y  +L  MD+  A+LN  ++E++ +  P  +     D P  V +L+++LYGLKQS R WN T+DDF + +G  +   D C+Y  RD  G+  + VA+Y+D LV+A   +++ +  KH +S+RF M DLG L   LG+
Sbjct:   65 RKAIGCRWVFRVKENQAGEIERFKARLVAKGFSQKYDIDYDETFAPVAKFTSIRIVLSLAAKYGLKLHQMDVKTAFLNGVLDEDIYMAQPDGYV--DEDHPDHVCKLKRSLYGLKQSPRMWNQTIDDFMLKLGFKKCESDHCVYLKRD--GQDMIFVALYVDDLVLASSNDELLESTKHALSKRFEMTDLGELEYFLGM 259          
BLAST of mRNA_H-paniculata_contig213.5592.1 vs. uniprot
Match: A0A2G8RWY5_9APHY (Transcription factor n=1 Tax=Ganoderma sinense ZZ0214-1 TaxID=1077348 RepID=A0A2G8RWY5_9APHY)

HSP 1 Score: 145 bits (367), Expect = 6.870e-37
Identity = 85/196 (43.37%), Postives = 122/196 (62.24%), Query Frame = 0
Query:    4 IRTKLIFKRKLKEDGSVARYKARLVAQGFSQVEGEDFF--ETSALVARTLTC-AVFSLAVEYDFELEGMDIDAAYLNAPVEEELIVKLPSQFSPSSRDTPFVRRLRKNLYGLKQSGRNWNNTLDDFFVGIGLDRSTIDSCLYFSRDDRGETDLLVAVYLDGLVIAGRREKVDEFKHNISQRFRMKDLGSLSRMLGI 196
            + +KL+F+ K   +G+V+ +KARLVAQGFSQV G D+   ET A V+R  +   + SLA  +D+EL  MD+ +AYLN  +EE + ++LP  F+P  + +  V RL+K LYGLKQ+GR W  TL      +G  R   D  +++ R+  GE+ ++VA  +D L I G  + VD F  +I QRF M DLG L  +LGI
Sbjct: 1072 VGSKLVFRVKHDAEGAVSGFKARLVAQGFSQVPGRDYHDDETFAPVSRLPSIRTILSLAARHDWELRQMDVKSAYLNGILEETVYMRLPPGFAPPEQ-SHLVCRLKKTLYGLKQAGRGWYKTLTAAMENMGFTRCVADHAVFYKRE--GESAIIVAASVDDLTITGTSDLVDAFAVDIKQRFEMSDLGDLHWILGI 1264          
BLAST of mRNA_H-paniculata_contig213.5592.1 vs. uniprot
Match: H3H9Y1_PHYRM (CCHC-type domain-containing protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3H9Y1_PHYRM)

HSP 1 Score: 143 bits (361), Expect = 1.100e-36
Identity = 84/199 (42.21%), Postives = 123/199 (61.81%), Query Frame = 0
Query:    1 RKAIRTKLIFKRKLKEDGSVARYKARLVAQGFSQVEGEDFFETSALVAR-TLTCAVFSLAVEYDFELEGMDIDAAYLNAPVEEELIVKLPSQFSPSSRDTP-FVRRLRKNLYGLKQSGRNWNNTLDDFFVGIGLDRSTIDSCLYFSRDDRGETDLLVAVYLDGLVIAGRREKV-DEFKHNISQRFRMKDLGSLSRMLGI 196
            RKAI  + +F+ K  + G + R+KARLVA+GFSQ  G D+ ET A VA+ T    V SLA +Y  +L  MD+  A+LN  ++E++ +  P  +     D P  V +L+++LYGLKQS R WN T+DDF + +G  +   D C+Y  RD  G+  + VA+Y+D LV+A   +++ D  KH +S+RF M DLG L   LG+
Sbjct:  324 RKAIGCRWVFRVKENQAGEIERFKARLVAKGFSQKYGIDYDETFAPVAKFTSIRIVLSLAAKYGLKLHQMDVKTAFLNGVLDEDIYMAQPDGYV--DEDHPDHVCKLKRSLYGLKQSPRMWNQTIDDFMLKLGFKKCESDHCVYLKRD--GQDMIFVALYVDDLVLASSNDELLDSTKHALSKRFEMTDLGELEYFLGM 518          
BLAST of mRNA_H-paniculata_contig213.5592.1 vs. uniprot
Match: H3H7U0_PHYRM (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3H7U0_PHYRM)

HSP 1 Score: 142 bits (357), Expect = 2.050e-36
Identity = 83/199 (41.71%), Postives = 123/199 (61.81%), Query Frame = 0
Query:    1 RKAIRTKLIFKRKLKEDGSVARYKARLVAQGFSQVEGEDFFETSALVAR-TLTCAVFSLAVEYDFELEGMDIDAAYLNAPVEEELIVKLPSQFSPSSRDTP-FVRRLRKNLYGLKQSGRNWNNTLDDFFVGIGLDRSTIDSCLYFSRDDRGETDLLVAVYLDGLVIAGRREKV-DEFKHNISQRFRMKDLGSLSRMLGI 196
            RKAI  + +F+ K  + G + R+KARLVA+GFSQ  G D+ ET A VA+ T    V SLA +Y  +L  MD+  A+LN  ++E++ +  P  +     D P  V +L+++LYGLKQS R WN T+DDF + +G  +   D C+Y  RD  G+  + VA+Y+D LV+A   +++ +  KH +S+RF M DLG L   LG+
Sbjct:  202 RKAIGCRWVFRVKENQAGEIERFKARLVAKGFSQKYGIDYDETFAPVAKFTSIRIVLSLAAKYGLKLHQMDVKTAFLNGVLDEDIYMAQPDGYV--DEDHPDHVCKLKRSLYGLKQSPRMWNQTIDDFMLKLGFKKCESDHCVYLKRD--GQDMIFVALYVDDLVLASSNDELLESTKHALSKRFEMTDLGELEYFLGM 396          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig213.5592.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6G0WHK2_9STRA1.380e-3942.50Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6A4ZM73_9STRA4.980e-3942.29Integrase catalytic domain-containing protein (Fra... [more]
H3H934_PHYRM6.720e-3841.71Reverse transcriptase Ty1/copia-type domain-contai... [more]
W7TII5_9STRA1.280e-3743.55Gag-pol polyprotein n=1 Tax=Nannochloropsis gadita... [more]
A0A7D9HG25_PARCT4.990e-3740.64Reverse transcriptase Ty1/copia-type domain-contai... [more]
H3H7D1_PHYRM5.280e-3741.21Reverse transcriptase Ty1/copia-type domain-contai... [more]
H3H8P6_PHYRM6.480e-3741.21Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A2G8RWY5_9APHY6.870e-3743.37Transcription factor n=1 Tax=Ganoderma sinense ZZ0... [more]
H3H9Y1_PHYRM1.100e-3642.21CCHC-type domain-containing protein n=1 Tax=Phytop... [more]
H3H7U0_PHYRM2.050e-3641.71Reverse transcriptase Ty1/copia-type domain-contai... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013103Reverse transcriptase, RNA-dependent DNA polymerasePFAMPF07727RVT_2coord: 1..196
e-value: 2.0E-45
score: 155.3
NoneNo IPR availablePANTHERPTHR11439:SF267coord: 1..196
IPR039537Retrotransposon Ty1/copia-likePANTHERPTHR11439GAG-POL-RELATED RETROTRANSPOSONcoord: 1..196

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig213contigH-paniculata_contig213:35188..35775 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig213.5592.1mRNA_H-paniculata_contig213.5592.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig213 35188..35775 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig213.5592.1 ID=prot_H-paniculata_contig213.5592.1|Name=mRNA_H-paniculata_contig213.5592.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=196bp
RKAIRTKLIFKRKLKEDGSVARYKARLVAQGFSQVEGEDFFETSALVART
LTCAVFSLAVEYDFELEGMDIDAAYLNAPVEEELIVKLPSQFSPSSRDTP
FVRRLRKNLYGLKQSGRNWNNTLDDFFVGIGLDRSTIDSCLYFSRDDRGE
TDLLVAVYLDGLVIAGRREKVDEFKHNISQRFRMKDLGSLSRMLGI
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013103RVT_2
IPR039537Retrotran_Ty1/copia-like