mRNA_H-paniculata_contig213.5592.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig213.5592.1 vs. uniprot
Match: A0A6G0WHK2_9STRA (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WHK2_9STRA) HSP 1 Score: 146 bits (369), Expect = 1.380e-39 Identity = 85/200 (42.50%), Postives = 128/200 (64.00%), Query Frame = 1
Query: 1 RKAIRTKLIFKRKLKEDGSVARYKARLVAQGFSQVEGEDFFETSALVARTLTCAVF-SLAVEYDFELEGMDIDAAYLNAPVEEELIVKLPSQFSPSSRD--TPFVRRLRKNLYGLKQSGRNWNNTLDDFFVGIGLDRSTIDSCLYFSRDDRGETDLLVAVYLDGLVIAGRR-EKVDEFKHNISQRFRMKDLGSLSRMLGI 588
RKAI K +FK K K DGS+ +YKARLVA+G+SQ G D+ ET VA+ + V SLA +++ EL+ MD++ A+LN+ ++E++ +++P + + V +L+K+LYGLKQ+ R WN T+D F + IG +S D C+Y R D E +LV++Y+D L++A E + K +S+RF+M DLG LS LGI
Sbjct: 86 RKAIGCKWVFKVKEKADGSIDKYKARLVAKGYSQTFGIDYEETFTPVAKFTSIRVLLSLAAKHNLELQQMDVNTAFLNSDLDEDIYMEIPMGLNDHKNPGLSKPVLKLKKSLYGLKQAPRLWNQTIDGFMLSIGFVKSKADHCIYIKRQD--EDIILVSLYVDDLILASNSDEMMQTTKIALSKRFKMTDLGPLSYCLGI 283
BLAST of mRNA_H-paniculata_contig213.5592.1 vs. uniprot
Match: H3H934_PHYRM (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3H934_PHYRM) HSP 1 Score: 141 bits (356), Expect = 6.720e-38 Identity = 83/199 (41.71%), Postives = 123/199 (61.81%), Query Frame = 1
Query: 1 RKAIRTKLIFKRKLKEDGSVARYKARLVAQGFSQVEGEDFFETSALVAR-TLTCAVFSLAVEYDFELEGMDIDAAYLNAPVEEELIVKLPSQFSPSSRDTP-FVRRLRKNLYGLKQSGRNWNNTLDDFFVGIGLDRSTIDSCLYFSRDDRGETDLLVAVYLDGLVIAGRREKV-DEFKHNISQRFRMKDLGSLSRMLGI 588
RKAI + +F+ K + G + R+KARLVA+GFSQ G D+ ET A VA+ T V SLA +Y +L MD+ A+LN ++E++ + P + D P V +L+++LYGLKQS R WN T+DDF + +G + D C+Y RD G+ + VA+Y+D LV+A +++ + KH +S+RF M DLG L LG+
Sbjct: 26 RKAIGCRWVFRVKDNQAGEIERFKARLVAKGFSQKYGIDYDETFAPVAKFTSIRIVLSLAAKYGLKLHQMDVKTAFLNGVLDEDIYMAQPDGYV--DEDHPDHVCKLKRSLYGLKQSPRMWNQTIDDFMLKLGFKKCESDHCVYLKRD--GQDMIFVALYVDDLVLASSNDELLESTKHALSKRFEMTDLGELEYFLGM 220
BLAST of mRNA_H-paniculata_contig213.5592.1 vs. uniprot
Match: W7TII5_9STRA (Gag-pol polyprotein n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TII5_9STRA) HSP 1 Score: 141 bits (355), Expect = 1.280e-37 Identity = 81/186 (43.55%), Postives = 114/186 (61.29%), Query Frame = 1
Query: 46 EDGSVARYKARLVAQGFSQVEGEDFFETSALVARTLTCA-VFSLAVEYDFELEGMDIDAAYLNAPVEEELIVKLP---SQFSPSSRDTPFVRRLRKNLYGLKQSGRNWNNTLDDFFVGIGLDRSTIDSCLYFSRDDRGETDLLVAVYLDGLVIAGR-REKVDEFKHNISQRFRMKDLGSLSRMLGI 588
++G + R KAR +A+G+SQ G D+ T A VA T + ++A D EL+ MD+D AYL + +EE++ VK P Q P+ + V RLRK+LYGLKQSGRNW+ +D +F G G S+ D CLY GE L++ +Y+D L+IAG R+ VD+FK IS+ MKDL L +LG+
Sbjct: 30 QNGIIVRRKARFIAKGYSQEYGYDYLNTYAPVASITTIRLILAIACILDLELDNMDVDTAYLQSDLEEKIYVKQPPGYEQCGPNGEE--LVCRLRKSLYGLKQSGRNWHKKIDGWFRGYGFHSSSADPCLYVKFGSSGEM-LVIVLYVDDLIIAGNSRDMVDDFKQAISKEISMKDLKELDWILGM 212
BLAST of mRNA_H-paniculata_contig213.5592.1 vs. uniprot
Match: A0A7D9HG25_PARCT (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A7D9HG25_PARCT) HSP 1 Score: 143 bits (360), Expect = 4.990e-37 Identity = 76/187 (40.64%), Postives = 117/187 (62.57%), Query Frame = 1
Query: 40 LKEDGS-VARYKARLVAQGFSQVEGEDFFETSALVARTLTCAVF-SLAVEYDFELEGMDIDAAYLNAPVEEELIVKLPSQFSPSSRD-TPFVRRLRKNLYGLKQSGRNWNNTLDDFFVGIGLDRSTIDSCLYFSRDDRGETDLLVAVYLDGLVIAGRR-EKVDEFKHNISQRFRMKDLGSLSRMLGI 588
+KED + + KAR VA+G+SQV G D+ ET + A + + LA +YD + MD+ A+L+AP++ E+ ++ P F S + V RL+K+LYGLKQSGRNWN LD++ + G R+ +D C+Y + GE ++V +++D L+IA +K+ +FK N+ +FRMKDLG +S LGI
Sbjct: 197 IKEDANGLETLKARYVAKGYSQVHGIDYEETFSPTANITSITILMQLAAQYDLTVHQMDVKTAFLHAPIDHEIFMEQPMGFEELSENGVKLVYRLKKSLYGLKQSGRNWNRVLDEYLISDGFVRNPVDHCVY--QKQTGEDIIIVVIWVDDLIIASSNTDKIRQFKENMKSKFRMKDLGEISYFLGI 381
BLAST of mRNA_H-paniculata_contig213.5592.1 vs. uniprot
Match: H3H7D1_PHYRM (Reverse transcriptase Ty1/copia-type domain-containing protein n=2 Tax=Phytophthora ramorum TaxID=164328 RepID=H3H7D1_PHYRM) HSP 1 Score: 137 bits (346), Expect = 5.280e-37 Identity = 82/199 (41.21%), Postives = 121/199 (60.80%), Query Frame = 1
Query: 1 RKAIRTKLIFKRKLKEDGSVARYKARLVAQGFSQVEGEDFFETSALVAR-TLTCAVFSLAVEYDFELEGMDIDAAYLNAPVEEELIVKLPSQFSPSSRDTP-FVRRLRKNLYGLKQSGRNWNNTLDDFFVGIGLDRSTIDSCLYFSRDDRGETDLLVAVYLDGLVIAGRREKVD-EFKHNISQRFRMKDLGSLSRMLGI 588
RKAI + +F+ K + G + R+KARLVA+GFSQ G D+ ET A VA+ T V SLA +Y +L MD+ A+LN ++E++ + P + D P V +L+++LYGLKQS R WN T+DDF + +G + D C+Y RD G+ + VA+Y+D LV+A +K+ + K +S RF M D+G L LG+
Sbjct: 43 RKAIGCRWVFRVKENQAGEIERFKARLVAKGFSQKYGIDYDETFAPVAKFTSIRIVLSLAAKYGLKLHQMDVKTAFLNGVLDEDIYMAQPDGYV--DEDHPDHVCKLKRSLYGLKQSPRMWNQTIDDFMLKLGFKKCESDHCIYLKRD--GQDMIFVALYVDDLVLASSSDKMLLDTKQALSHRFEMTDMGQLKYFLGM 237
BLAST of mRNA_H-paniculata_contig213.5592.1 vs. uniprot
Match: H3H8P6_PHYRM (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3H8P6_PHYRM) HSP 1 Score: 139 bits (350), Expect = 6.480e-37 Identity = 82/199 (41.21%), Postives = 122/199 (61.31%), Query Frame = 1
Query: 1 RKAIRTKLIFKRKLKEDGSVARYKARLVAQGFSQVEGEDFFETSALVAR-TLTCAVFSLAVEYDFELEGMDIDAAYLNAPVEEELIVKLPSQFSPSSRDTP-FVRRLRKNLYGLKQSGRNWNNTLDDFFVGIGLDRSTIDSCLYFSRDDRGETDLLVAVYLDGLVIAGRREKV-DEFKHNISQRFRMKDLGSLSRMLGI 588
RKAI + +F+ K + G + R+KARLVA+GFSQ D+ ET A VA+ T V SLA +Y +L MD+ A+LN ++E++ + P + D P V +L+++LYGLKQS R WN T+DDF + +G + D C+Y RD G+ + VA+Y+D LV+A +++ + KH +S+RF M DLG L LG+
Sbjct: 65 RKAIGCRWVFRVKENQAGEIERFKARLVAKGFSQKYDIDYDETFAPVAKFTSIRIVLSLAAKYGLKLHQMDVKTAFLNGVLDEDIYMAQPDGYV--DEDHPDHVCKLKRSLYGLKQSPRMWNQTIDDFMLKLGFKKCESDHCVYLKRD--GQDMIFVALYVDDLVLASSNDELLESTKHALSKRFEMTDLGELEYFLGM 259
BLAST of mRNA_H-paniculata_contig213.5592.1 vs. uniprot
Match: A0A2G8RWY5_9APHY (Transcription factor n=1 Tax=Ganoderma sinense ZZ0214-1 TaxID=1077348 RepID=A0A2G8RWY5_9APHY) HSP 1 Score: 145 bits (367), Expect = 6.870e-37 Identity = 85/196 (43.37%), Postives = 122/196 (62.24%), Query Frame = 1
Query: 10 IRTKLIFKRKLKEDGSVARYKARLVAQGFSQVEGEDFF--ETSALVARTLTC-AVFSLAVEYDFELEGMDIDAAYLNAPVEEELIVKLPSQFSPSSRDTPFVRRLRKNLYGLKQSGRNWNNTLDDFFVGIGLDRSTIDSCLYFSRDDRGETDLLVAVYLDGLVIAGRREKVDEFKHNISQRFRMKDLGSLSRMLGI 588
+ +KL+F+ K +G+V+ +KARLVAQGFSQV G D+ ET A V+R + + SLA +D+EL MD+ +AYLN +EE + ++LP F+P + + V RL+K LYGLKQ+GR W TL +G R D +++ R+ GE+ ++VA +D L I G + VD F +I QRF M DLG L +LGI
Sbjct: 1072 VGSKLVFRVKHDAEGAVSGFKARLVAQGFSQVPGRDYHDDETFAPVSRLPSIRTILSLAARHDWELRQMDVKSAYLNGILEETVYMRLPPGFAPPEQ-SHLVCRLKKTLYGLKQAGRGWYKTLTAAMENMGFTRCVADHAVFYKRE--GESAIIVAASVDDLTITGTSDLVDAFAVDIKQRFEMSDLGDLHWILGI 1264
BLAST of mRNA_H-paniculata_contig213.5592.1 vs. uniprot
Match: H3H9Y1_PHYRM (CCHC-type domain-containing protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3H9Y1_PHYRM) HSP 1 Score: 143 bits (361), Expect = 1.100e-36 Identity = 84/199 (42.21%), Postives = 123/199 (61.81%), Query Frame = 1
Query: 1 RKAIRTKLIFKRKLKEDGSVARYKARLVAQGFSQVEGEDFFETSALVAR-TLTCAVFSLAVEYDFELEGMDIDAAYLNAPVEEELIVKLPSQFSPSSRDTP-FVRRLRKNLYGLKQSGRNWNNTLDDFFVGIGLDRSTIDSCLYFSRDDRGETDLLVAVYLDGLVIAGRREKV-DEFKHNISQRFRMKDLGSLSRMLGI 588
RKAI + +F+ K + G + R+KARLVA+GFSQ G D+ ET A VA+ T V SLA +Y +L MD+ A+LN ++E++ + P + D P V +L+++LYGLKQS R WN T+DDF + +G + D C+Y RD G+ + VA+Y+D LV+A +++ D KH +S+RF M DLG L LG+
Sbjct: 324 RKAIGCRWVFRVKENQAGEIERFKARLVAKGFSQKYGIDYDETFAPVAKFTSIRIVLSLAAKYGLKLHQMDVKTAFLNGVLDEDIYMAQPDGYV--DEDHPDHVCKLKRSLYGLKQSPRMWNQTIDDFMLKLGFKKCESDHCVYLKRD--GQDMIFVALYVDDLVLASSNDELLDSTKHALSKRFEMTDLGELEYFLGM 518
BLAST of mRNA_H-paniculata_contig213.5592.1 vs. uniprot
Match: H3H7U0_PHYRM (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3H7U0_PHYRM) HSP 1 Score: 142 bits (357), Expect = 2.050e-36 Identity = 83/199 (41.71%), Postives = 123/199 (61.81%), Query Frame = 1
Query: 1 RKAIRTKLIFKRKLKEDGSVARYKARLVAQGFSQVEGEDFFETSALVAR-TLTCAVFSLAVEYDFELEGMDIDAAYLNAPVEEELIVKLPSQFSPSSRDTP-FVRRLRKNLYGLKQSGRNWNNTLDDFFVGIGLDRSTIDSCLYFSRDDRGETDLLVAVYLDGLVIAGRREKV-DEFKHNISQRFRMKDLGSLSRMLGI 588
RKAI + +F+ K + G + R+KARLVA+GFSQ G D+ ET A VA+ T V SLA +Y +L MD+ A+LN ++E++ + P + D P V +L+++LYGLKQS R WN T+DDF + +G + D C+Y RD G+ + VA+Y+D LV+A +++ + KH +S+RF M DLG L LG+
Sbjct: 202 RKAIGCRWVFRVKENQAGEIERFKARLVAKGFSQKYGIDYDETFAPVAKFTSIRIVLSLAAKYGLKLHQMDVKTAFLNGVLDEDIYMAQPDGYV--DEDHPDHVCKLKRSLYGLKQSPRMWNQTIDDFMLKLGFKKCESDHCVYLKRD--GQDMIFVALYVDDLVLASSNDELLESTKHALSKRFEMTDLGELEYFLGM 396
BLAST of mRNA_H-paniculata_contig213.5592.1 vs. uniprot
Match: H3HA00_PHYRM (Reverse transcriptase Ty1/copia-type domain-containing protein n=2 Tax=Phytophthora ramorum TaxID=164328 RepID=H3HA00_PHYRM) HSP 1 Score: 142 bits (357), Expect = 4.520e-36 Identity = 83/199 (41.71%), Postives = 123/199 (61.81%), Query Frame = 1
Query: 1 RKAIRTKLIFKRKLKEDGSVARYKARLVAQGFSQVEGEDFFETSALVAR-TLTCAVFSLAVEYDFELEGMDIDAAYLNAPVEEELIVKLPSQFSPSSRDTP-FVRRLRKNLYGLKQSGRNWNNTLDDFFVGIGLDRSTIDSCLYFSRDDRGETDLLVAVYLDGLVIAGRREKV-DEFKHNISQRFRMKDLGSLSRMLGI 588
RKAI + +F+ K + G + R+KARLVA+GFSQ G D+ ET A VA+ T V SLA +Y +L MD+ A+LN ++E++ + P + D P V +L+++LYGLKQS R WN T+DDF + +G + D C+Y RD G+ + VA+Y+D LV+A +++ + KH +S+RF M DLG L LG+
Sbjct: 199 RKAIGCRWVFRVKENQAGEIERFKARLVAKGFSQKYGIDYDETFAPVAKFTSIRIVLSLAAKYGLKLHQMDVKTAFLNGVLDEDIYMAQPDGYV--DEDHPDHVCKLKRSLYGLKQSPRMWNQTIDDFMLKLGFKKCESDHCVYLKRD--GQDMIFVALYVDDLVLASSNDELLESTKHALSKRFEMTDLGELEYFLGM 393 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig213.5592.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig213.5592.1 >prot_H-paniculata_contig213.5592.1 ID=prot_H-paniculata_contig213.5592.1|Name=mRNA_H-paniculata_contig213.5592.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=196bp RKAIRTKLIFKRKLKEDGSVARYKARLVAQGFSQVEGEDFFETSALVARTback to top mRNA from alignment at H-paniculata_contig213:35188..35775+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig213.5592.1 ID=mRNA_H-paniculata_contig213.5592.1|Name=mRNA_H-paniculata_contig213.5592.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=588bp|location=Sequence derived from alignment at H-paniculata_contig213:35188..35775+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig213:35188..35775+ >mRNA_H-paniculata_contig213.5592.1 ID=mRNA_H-paniculata_contig213.5592.1|Name=mRNA_H-paniculata_contig213.5592.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1176bp|location=Sequence derived from alignment at H-paniculata_contig213:35188..35775+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |