prot_H-paniculata_contig2121.5561.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig2121.5561.1
Unique Nameprot_H-paniculata_contig2121.5561.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length206
Homology
BLAST of mRNA_H-paniculata_contig2121.5561.1 vs. uniprot
Match: A0A8F0F7Q2_9PHAE (Ribosomal protein S4 n=1 Tax=Protohalopteris sp. TaxID=2843287 RepID=A0A8F0F7Q2_9PHAE)

HSP 1 Score: 365 bits (936), Expect = 7.410e-127
Identity = 189/205 (92.20%), Postives = 195/205 (95.12%), Query Frame = 0
Query:    1 RHSGPRLKIIKRFGELPGLTTKIITDEKGKNLNDKQKPKASAYKIRLNEKQKLRYNYGVTESQLLRYVKEARRRKGLTGFILMQLLEMRLDNIIFRLKLAPTIPAARQFVNHGHVLINNKKVNIPSFQCQPNDLISFSNKQKTLDLIKLNLMQNKGLNINPDVSNSHLEFDQALLTGKIINLVKREDLSFNINDMLVIEYYSRLS 205
            R+ GPRLKIIKRFGELPGLTTKI+ DEKGK  NDKQK K SAYKIRLNEKQKLRYNYGVTESQLLRYVKEARR+KGLTGFILMQLLEMRLDNIIFRLKLAPTIPAARQFV+HGHVLINNKKVNIPSFQCQPNDLISFSNKQKTLDLIK NL QNKGLNINP++SNSHLEFDQ LLTGKI NLVKREDLSFNINDMLVIEYYSRLS
Sbjct:    3 RYIGPRLKIIKRFGELPGLTTKILIDEKGKPPNDKQKTKVSAYKIRLNEKQKLRYNYGVTESQLLRYVKEARRKKGLTGFILMQLLEMRLDNIIFRLKLAPTIPAARQFVSHGHVLINNKKVNIPSFQCQPNDLISFSNKQKTLDLIKSNLRQNKGLNINPELSNSHLEFDQKLLTGKIKNLVKREDLSFNINDMLVIEYYSRLS 207          
BLAST of mRNA_H-paniculata_contig2121.5561.1 vs. uniprot
Match: A0A8F0JYE9_9PHAE (Ribosomal protein S4 n=2 Tax=Laminariales TaxID=2886 RepID=A0A8F0JYE9_9PHAE)

HSP 1 Score: 313 bits (801), Expect = 3.040e-106
Identity = 159/208 (76.44%), Postives = 184/208 (88.46%), Query Frame = 0
Query:    1 RHSGPRLKIIKRFGELPGLTTKIITDEK---GKNLNDKQKPKASAYKIRLNEKQKLRYNYGVTESQLLRYVKEARRRKGLTGFILMQLLEMRLDNIIFRLKLAPTIPAARQFVNHGHVLINNKKVNIPSFQCQPNDLISFSNKQKTLDLIKLNLMQNKGLNINPDVSNSHLEFDQALLTGKIINLVKREDLSFNINDMLVIEYYSRLS 205
            R+ GPRLKIIKRFG+LPGLT K++  ++   GK+  D++KPKASAYKIRLNEKQKLRYNYG+TESQLLRYVKEARRRKGLTGF+LMQLLEMRLDN+IFRL LAPTIPAARQFVNHGHV+IN K+VNIPSFQC+PNDLISFS K KT+ L+K NL + +G N N +VSNSHLEFD  LLTGKI+NL++R+DL F INDMLVIEYYSRL+
Sbjct:    3 RYRGPRLKIIKRFGDLPGLTRKVVVKKQSSQGKDTADQKKPKASAYKIRLNEKQKLRYNYGITESQLLRYVKEARRRKGLTGFLLMQLLEMRLDNVIFRLGLAPTIPAARQFVNHGHVIINKKRVNIPSFQCRPNDLISFSTKPKTIALLKSNLNEAEGSNSNDNVSNSHLEFDPKLLTGKILNLIQRKDLRFKINDMLVIEYYSRLA 210          
BLAST of mRNA_H-paniculata_contig2121.5561.1 vs. uniprot
Match: A0A8F0FB40_9PHAE (Ribosomal protein S4 n=1 Tax=Desmarestia aculeata TaxID=62298 RepID=A0A8F0FB40_9PHAE)

HSP 1 Score: 304 bits (779), Expect = 6.810e-103
Identity = 158/208 (75.96%), Postives = 178/208 (85.58%), Query Frame = 0
Query:    1 RHSGPRLKIIKRFGELPGLTTKIITDEK---GKNLNDKQKPKASAYKIRLNEKQKLRYNYGVTESQLLRYVKEARRRKGLTGFILMQLLEMRLDNIIFRLKLAPTIPAARQFVNHGHVLINNKKVNIPSFQCQPNDLISFSNKQKTLDLIKLNLMQNKGLNINPDVSNSHLEFDQALLTGKIINLVKREDLSFNINDMLVIEYYSRLS 205
            R+ GPRLKIIK+FGELPGLT K++  ++   GK++ND++K KAS+YKIRLNEKQKLRYNYGVTESQLLRYVKEARRRKGLTGF+LMQLLEMRLDNIIFRL LAPTIPAARQFVNHGHVLIN KKVNIPSFQC+PND+I+FS K KT+ L+K N       N N D+SNSHLEFD   L GKI NLVKR+DL F INDMLVIEYYSRL+
Sbjct:    3 RYRGPRLKIIKKFGELPGLTRKVVVKKQNSSGKDINDQKKSKASSYKIRLNEKQKLRYNYGVTESQLLRYVKEARRRKGLTGFLLMQLLEMRLDNIIFRLGLAPTIPAARQFVNHGHVLINEKKVNIPSFQCRPNDVITFSTKPKTITLLKSNSNHEDNSNSNNDISNSHLEFDYNSLKGKIKNLVKRKDLRFKINDMLVIEYYSRLA 210          
BLAST of mRNA_H-paniculata_contig2121.5561.1 vs. uniprot
Match: A0A0S0FBJ9_COSCS (30S ribosomal protein S4, chloroplastic n=28 Tax=Laminariales TaxID=2886 RepID=A0A0S0FBJ9_COSCS)

HSP 1 Score: 300 bits (769), Expect = 2.270e-101
Identity = 155/208 (74.52%), Postives = 177/208 (85.10%), Query Frame = 0
Query:    1 RHSGPRLKIIKRFGELPGLTTKIITDEKG---KNLNDKQKPKASAYKIRLNEKQKLRYNYGVTESQLLRYVKEARRRKGLTGFILMQLLEMRLDNIIFRLKLAPTIPAARQFVNHGHVLINNKKVNIPSFQCQPNDLISFSNKQKTLDLIKLNLMQNKGLNINPDVSNSHLEFDQALLTGKIINLVKREDLSFNINDMLVIEYYSRLS 205
            R+ GPRLKIIKRFG+LPGLT K++  ++G   K   +++ PKASAYKIRLNEKQKLRYNYG+TESQLLRYVKEARRRKGLTGF+LMQLLEMRLDNIIFRL LAPTIPAARQ VNHGHVL+N K+VNIPSFQC+PND ISFS K K + L+K NL Q +    N ++ NSHLEFDQ LLTGKI+NLVKR+DL F INDMLVIEYYSRL+
Sbjct:    3 RYRGPRLKIIKRFGDLPGLTRKVVLKKQGTQGKEATEQKTPKASAYKIRLNEKQKLRYNYGITESQLLRYVKEARRRKGLTGFLLMQLLEMRLDNIIFRLGLAPTIPAARQIVNHGHVLVNKKRVNIPSFQCRPNDSISFSVKPKIMALLKSNLNQGENSTSNDNILNSHLEFDQKLLTGKILNLVKRKDLRFKINDMLVIEYYSRLA 210          
BLAST of mRNA_H-paniculata_contig2121.5561.1 vs. uniprot
Match: A0A6B7EXY2_9PHAE (30S ribosomal protein S4 n=1 Tax=Cladosiphon okamuranus TaxID=309737 RepID=A0A6B7EXY2_9PHAE)

HSP 1 Score: 296 bits (758), Expect = 8.710e-100
Identity = 151/204 (74.02%), Postives = 175/204 (85.78%), Query Frame = 0
Query:    1 RHSGPRLKIIKRFGELPGLTTKIITDEKGKNLNDKQKPKASAYKIRLNEKQKLRYNYGVTESQLLRYVKEARRRKGLTGFILMQLLEMRLDNIIFRLKLAPTIPAARQFVNHGHVLINNKKVNIPSFQCQPNDLISFSNKQKTLDLIKLNLMQNKGLNINPDVSNSHLEFDQALLTGKIINLVKREDLSFNINDMLVIEYYSRL 204
            R+ GPRLKII R G+LPGLT K++  +  K   +++K K S YKIRLNEKQKLRYNYG+TESQLLRYVKEA+RRKGLTGF+LMQLLEMRLDNIIFRL LAPTIPAARQFV+HGHV+IN K+VNIPSFQC+PND+ISFS K KT+ LIK NL Q + LN N ++SNSHLEFD  LLTGKI+NL++R+DL F INDMLVIEYYSRL
Sbjct:    3 RYRGPRLKIINRLGDLPGLTRKVVIKQDSK---EQKKSKDSPYKIRLNEKQKLRYNYGITESQLLRYVKEAKRRKGLTGFLLMQLLEMRLDNIIFRLGLAPTIPAARQFVSHGHVMINKKRVNIPSFQCRPNDIISFSTKPKTVTLIKSNLNQGENLNANDNISNSHLEFDSKLLTGKILNLIQRKDLRFKINDMLVIEYYSRL 203          
BLAST of mRNA_H-paniculata_contig2121.5561.1 vs. uniprot
Match: D1J700_ECTSI (30S ribosomal protein S4, chloroplastic n=8 Tax=Ectocarpales TaxID=2877 RepID=D1J700_ECTSI)

HSP 1 Score: 296 bits (757), Expect = 1.240e-99
Identity = 152/204 (74.51%), Postives = 174/204 (85.29%), Query Frame = 0
Query:    1 RHSGPRLKIIKRFGELPGLTTKIITDEKGKNLNDKQKPKASAYKIRLNEKQKLRYNYGVTESQLLRYVKEARRRKGLTGFILMQLLEMRLDNIIFRLKLAPTIPAARQFVNHGHVLINNKKVNIPSFQCQPNDLISFSNKQKTLDLIKLNLMQNKGLNINPDVSNSHLEFDQALLTGKIINLVKREDLSFNINDMLVIEYYSRL 204
            R+ GPRLKII R G+LPGLT K++  ++     +++K KAS YKIRLNEKQKLRYNYG+TESQLLRYVKEARRRKGLTGF+LMQLLEMRLDNIIFRL LAPTIPAARQFV+HGHV+IN K+VNIPSFQCQPND+ISFS   KT+ LIK NL Q +  N N +VSNSHLEFD  LLTGKI+NL++R+DL F INDMLVIEYYSRL
Sbjct:    3 RYRGPRLKIINRLGDLPGLTRKVVIKQE---TPEQKKSKASPYKIRLNEKQKLRYNYGITESQLLRYVKEARRRKGLTGFLLMQLLEMRLDNIIFRLGLAPTIPAARQFVSHGHVMINKKRVNIPSFQCQPNDIISFSKNPKTVTLIKANLNQKENSNPNDNVSNSHLEFDSQLLTGKIVNLIQRKDLRFKINDMLVIEYYSRL 203          
BLAST of mRNA_H-paniculata_contig2121.5561.1 vs. uniprot
Match: A0A8F0F9Q9_9PHAE (Ribosomal protein S4 n=1 Tax=Chorda asiatica TaxID=1281577 RepID=A0A8F0F9Q9_9PHAE)

HSP 1 Score: 292 bits (747), Expect = 5.060e-98
Identity = 154/208 (74.04%), Postives = 171/208 (82.21%), Query Frame = 0
Query:    1 RHSGPRLKIIKRFGELPGLTTKIITDEK---GKNLNDKQKPKASAYKIRLNEKQKLRYNYGVTESQLLRYVKEARRRKGLTGFILMQLLEMRLDNIIFRLKLAPTIPAARQFVNHGHVLINNKKVNIPSFQCQPNDLISFSNKQKTLDLIKLNLMQNKGLNINPDVSNSHLEFDQALLTGKIINLVKREDLSFNINDMLVIEYYSRLS 205
            R+ GPRLKIIKRFG+LPGLT K++  ++   GK  ND+   KASAYKIRLNEKQKLRYNYGVTE QLLRYVKEARRRKGLTGF+LMQLLEMRLDNIIFRL LAPTIPAARQ VNHGHVLIN K+VNIPSFQC+PND ISFS K KT+ LIK NL Q        ++S SHLEFD   LTG+I NL++R+DL F INDMLVIEYYSRLS
Sbjct:    3 RYRGPRLKIIKRFGDLPGLTRKVVLKKQNKYGKETNDQNLSKASAYKIRLNEKQKLRYNYGVTELQLLRYVKEARRRKGLTGFLLMQLLEMRLDNIIFRLGLAPTIPAARQLVNHGHVLINKKRVNIPSFQCRPNDSISFSTKPKTITLIKSNLNQGDNSTSKDNISTSHLEFDPKSLTGEIKNLIQRKDLKFKINDMLVIEYYSRLS 210          
BLAST of mRNA_H-paniculata_contig2121.5561.1 vs. uniprot
Match: A0A2R4QQ10_9PHAE (30S ribosomal protein S4 n=3 Tax=Fucaceae TaxID=3010 RepID=A0A2R4QQ10_9PHAE)

HSP 1 Score: 286 bits (733), Expect = 5.200e-96
Identity = 154/205 (75.12%), Postives = 171/205 (83.41%), Query Frame = 0
Query:    1 RHSGPRLKIIKRFGELPGLTTKIITDEKGKNLNDKQKPKASAYKIRLNEKQKLRYNYGVTESQLLRYVKEARRRKGLTGFILMQLLEMRLDNIIFRLKLAPTIPAARQFVNHGHVLINNKKVNIPSFQCQPNDLISFSNKQKTLDLIKLNLMQNKGLNINPDVSNSHLEFDQALLTGKIINLVKREDLSFNINDMLVIEYYSRLS 205
            R+ GPR+KIIK+ GELPGLT K I   K KN+N K++ KASAYKIRLNEKQKLRYNYG+TESQLL YVKEARRRKGLTGF+LMQLLEMRLDNIIFRL LAPTIPAARQ VNHGHVLINNKKVNIPSFQC+P D+ISFS+K KT +L+K+N  +   L     VS SHLEFD+  LT KI NLV R+DL F INDMLVIEYYSRLS
Sbjct:    3 RYRGPRIKIIKKLGELPGLTRKAI---KKKNVNQKKETKASAYKIRLNEKQKLRYNYGITESQLLSYVKEARRRKGLTGFLLMQLLEMRLDNIIFRLGLAPTIPAARQIVNHGHVLINNKKVNIPSFQCRPKDIISFSSKSKTNNLLKINSSEPNHL--TDKVSTSHLEFDKQSLTAKINNLVNRKDLRFKINDMLVIEYYSRLS 202          
BLAST of mRNA_H-paniculata_contig2121.5561.1 vs. uniprot
Match: A0A141BSI8_9PHAE (30S ribosomal protein S4, chloroplastic n=15 Tax=Sargassaceae TaxID=3014 RepID=A0A141BSI8_9PHAE)

HSP 1 Score: 266 bits (679), Expect = 1.050e-87
Identity = 146/209 (69.86%), Postives = 165/209 (78.95%), Query Frame = 0
Query:    1 RHSGPRLKIIKRFGELPGLTTKIITDEKGKNLNDKQKP---KASAYKIRLNEKQKLRYNYGVTESQLLRYVKEARRRKGLTGFILMQLLEMRLDNIIFRLKLAPTIPAARQFVNHGHVLINNKKVNIPSFQCQPNDLISFSNKQKTLDLIKLNLMQNKGLN-INPDVSNSHLEFDQALLTGKIINLVKREDLSFNINDMLVIEYYSRLS 205
            R+ GPRLKIIK+ G+LPGLT KII                 K+SAYKIRLNEKQKLRYNYG+TESQLL YVKEARRRKGLTGF+LMQLLEMRLDNIIFRL L PTIPA RQFV+HGHVL+N KKVNIPSFQC+PND+ISFS+K K  +L+K NL Q   +N I  +VS SHL+FDQ  LT KI  LV ++DLSF INDMLVIEYYSRL+
Sbjct:    3 RYRGPRLKIIKKLGQLPGLTRKIIIKXXXXXXXXXXXXXXSKSSAYKIRLNEKQKLRYNYGITESQLLTYVKEARRRKGLTGFLLMQLLEMRLDNIIFRLGLVPTIPAGRQFVSHGHVLVNKKKVNIPSFQCRPNDIISFSSKSKITNLLKTNLSQ---INYITDNVSTSHLKFDQQSLTAKINRLVTQKDLSFKINDMLVIEYYSRLA 208          
BLAST of mRNA_H-paniculata_contig2121.5561.1 vs. uniprot
Match: A0A2I4Q350_9PHAE (30S ribosomal protein S4, chloroplastic n=1 Tax=Dictyopteris divaricata TaxID=156996 RepID=A0A2I4Q350_9PHAE)

HSP 1 Score: 256 bits (653), Expect = 1.010e-83
Identity = 132/207 (63.77%), Postives = 161/207 (77.78%), Query Frame = 0
Query:    1 RHSGPRLKIIKRFGELPGLTTKIITDEKGKNLND---KQKPKASAYKIRLNEKQKLRYNYGVTESQLLRYVKEARRRKGLTGFILMQLLEMRLDNIIFRLKLAPTIPAARQFVNHGHVLINNKKVNIPSFQCQPNDLISFSNKQKTLDLIKLNLMQNKGLNINPDVSNSHLEFDQALLTGKIINLVKREDLSFNINDMLVIEYYSRL 204
            R+ GP+ KI+ +FG L GLT K   +++ +  ND   ++K KASAYKIRLNEKQKLRY YGV ESQL+RYVKEA+RRKGLTGF+LMQLLEMRLDNIIFRL LAPTIPAARQ VNHGHV IN K+VNIPSFQC+P D ISF+N+ + LD++K NL Q + +    +  N HLEFD   L G++ +L++  +L F INDMLVIEYYSRL
Sbjct:    3 RYRGPKKKIVNKFGNLAGLTQKTKREQQNQKENDLGEQKKDKASAYKIRLNEKQKLRYYYGVNESQLIRYVKEAKRRKGLTGFVLMQLLEMRLDNIIFRLNLAPTIPAARQLVNHGHVYINKKQVNIPSFQCEPGDSISFNNRPEILDMLKSNLAQKQNIKSTNNSINDHLEFDSNTLLGQVNSLIEEHNLIFTINDMLVIEYYSRL 209          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig2121.5561.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A8F0F7Q2_9PHAE7.410e-12792.20Ribosomal protein S4 n=1 Tax=Protohalopteris sp. T... [more]
A0A8F0JYE9_9PHAE3.040e-10676.44Ribosomal protein S4 n=2 Tax=Laminariales TaxID=28... [more]
A0A8F0FB40_9PHAE6.810e-10375.96Ribosomal protein S4 n=1 Tax=Desmarestia aculeata ... [more]
A0A0S0FBJ9_COSCS2.270e-10174.5230S ribosomal protein S4, chloroplastic n=28 Tax=L... [more]
A0A6B7EXY2_9PHAE8.710e-10074.0230S ribosomal protein S4 n=1 Tax=Cladosiphon okamu... [more]
D1J700_ECTSI1.240e-9974.5130S ribosomal protein S4, chloroplastic n=8 Tax=Ec... [more]
A0A8F0F9Q9_9PHAE5.060e-9874.04Ribosomal protein S4 n=1 Tax=Chorda asiatica TaxID... [more]
A0A2R4QQ10_9PHAE5.200e-9675.1230S ribosomal protein S4 n=3 Tax=Fucaceae TaxID=30... [more]
A0A141BSI8_9PHAE1.050e-8769.8630S ribosomal protein S4, chloroplastic n=15 Tax=S... [more]
A0A2I4Q350_9PHAE1.010e-8363.7730S ribosomal protein S4, chloroplastic n=1 Tax=Di... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001912Ribosomal protein S4/S9, N-terminalSMARTSM01390Ribosomal_S4_2coord: 1..87
e-value: 1.0E-19
score: 81.5
IPR001912Ribosomal protein S4/S9, N-terminalPFAMPF00163Ribosomal_S4coord: 1..87
e-value: 3.0E-18
score: 66.5
IPR002942RNA-binding S4 domainSMARTSM00363s4_6coord: 88..152
e-value: 1.6E-18
score: 77.5
IPR002942RNA-binding S4 domainPFAMPF01479S4coord: 88..135
e-value: 4.6E-18
score: 64.7
IPR002942RNA-binding S4 domainPROSITEPS50889S4coord: 88..148
score: 15.713
NoneNo IPR availableGENE3D1.10.1050.10coord: 4..203
e-value: 6.7E-58
score: 197.6
NoneNo IPR availablePANTHERPTHR11831:SF29coord: 24..131
NoneNo IPR availableSUPERFAMILY55174Alpha-L RNA-binding motifcoord: 1..203
IPR036986RNA-binding S4 domain superfamilyGENE3D3.10.290.10coord: 87..188
e-value: 6.7E-58
score: 197.6
IPR005709Ribosomal protein S4, bacterial-typeTIGRFAMTIGR01017TIGR01017coord: 1..203
e-value: 1.3E-58
score: 196.0
IPR005709Ribosomal protein S4, bacterial-typeHAMAPMF_01306_BRibosomal_S4_Bcoord: 1..203
score: 27.337
IPR022801Ribosomal protein S4/S9PANTHERPTHR1183130S 40S RIBOSOMAL PROTEINcoord: 24..131
IPR018079Ribosomal protein S4, conserved sitePROSITEPS00632RIBOSOMAL_S4coord: 86..110

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig2121contigH-paniculata_contig2121:21734..22351 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig2121.5561.1mRNA_H-paniculata_contig2121.5561.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig2121 21734..22351 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig2121.5561.1 ID=prot_H-paniculata_contig2121.5561.1|Name=mRNA_H-paniculata_contig2121.5561.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=206bp
RHSGPRLKIIKRFGELPGLTTKIITDEKGKNLNDKQKPKASAYKIRLNEK
QKLRYNYGVTESQLLRYVKEARRRKGLTGFILMQLLEMRLDNIIFRLKLA
PTIPAARQFVNHGHVLINNKKVNIPSFQCQPNDLISFSNKQKTLDLIKLN
LMQNKGLNINPDVSNSHLEFDQALLTGKIINLVKREDLSFNINDMLVIEY
YSRLS*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001912Ribosomal_S4/S9_N
IPR002942S4_RNA-bd
IPR036986S4_RNA-bd_sf
IPR005709Ribosomal_S4_bac-type
IPR022801Ribosomal_S4/S9
IPR018079Ribosomal_S4_CS